LOCUS BC151846 6496 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens collagen, type IV, alpha 5, mRNA (cDNA clone
MGC:167109 IMAGE:8860442), complete cds.
ACCESSION BC151846
VERSION BC151846.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6496)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6496)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-AUG-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: RIKEN
cDNA Library Preparation: RIKEN
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCF Plate: 13 Row: d Column: 4.
FEATURES Location/Qualifiers
source 1..6496
/db_xref="H-InvDB:HIT000435971"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:167109 IMAGE:8860442"
/tissue_type="Clones donated by RIKEN"
/clone_lib="NIH_MGC_424"
/lab_host="DH10B"
/note="Vector: pFLC1"
gene 1..6496
/gene="COL4A5"
/gene_synonym="CA54"
/db_xref="GeneID:1287"
/db_xref="HGNC:HGNC:2207"
/db_xref="MIM:303630"
CDS 245..5320
/gene="COL4A5"
/gene_synonym="CA54"
/codon_start=1
/product="collagen, type IV, alpha 5"
/protein_id="AAI51847.1"
/db_xref="GeneID:1287"
/db_xref="HGNC:HGNC:2207"
/db_xref="MIM:303630"
/translation="MKLRGVSLAAGLFLLALSLWGQPAEAAACYGCSPGSKCDCSGIK
GEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPG
TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGS
IIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM
GLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRG
PPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKG
DTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAV
MGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEI
CEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSL
GFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSP
GAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPG
FGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGD
PGLPGQPGLPGIPGSKGEPGIPGIGLHGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPG
PPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPK
GDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVP
GPPGERGSRGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPG
RSGVPGLKGDDGLQGQPGLPGPTGEKGSKGERGLPGPPGPMDPNLLGSKGEKGEPGLP
GIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIG
DMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLP
GYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPG
EPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQK
GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGR
PGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRP
GLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIK
GDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPG
QPGTRGLDGPPGPDGLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGTLQVYEGFS
LLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMP
MSMQPLKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTS
AGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQ
SETLKAGDLRTRISRCQVCMKRT"
BASE COUNT 1664 a 1575 c 1720 g 1537 t
ORIGIN
1 agaagggaaa agttctcctg agagaccggc tttggggagg ggagggggga aggaagagta
61 gctccttctt cttcttcttt tttttttctt ccactcttaa aaagcttctt tctcttcacc
121 caagcctcac tgtccctctc cggctctagc tctctccata taaaccctca agattatgtc
181 aattggttag agccagccgg gaatttcgtg cgggtgctga aggagctgcg ggagccggag
241 aagaatgaaa ctgcgtggag tcagcctggc tgccggcttg ttcttactgg ccctgagtct
301 ttgggggcag cctgcagagg ctgcggcttg ctatgggtgt tctccaggat caaagtgtga
361 ctgcagtggc ataaaagggg aaaagggaga gagagggttt ccaggtttgg aaggacaccc
421 aggattgcct ggatttccag gtccagaagg gcctccgggg cctcggggac aaaagggtga
481 tgatggaatt ccagggccac caggaccaaa aggaatcaga ggtcctcctg gacttcctgg
541 atttccaggg acaccaggtc ttcctggaat gccaggccac gatggggccc caggacctca
601 aggtattccc ggatgcaatg gaaccaaggg agaacgtgga tttccaggca gtcccggttt
661 tcctggttta cagggtcctc caggaccccc tgggatccca ggtatgaagg gtgaaccagg
721 tagtataatt atgtcatcac tgccaggacc aaagggtaat ccaggatatc caggtcctcc
781 tggaatacaa ggcctacctg gtcccactgg tataccaggg ccaattggtc ccccaggacc
841 accaggtttg atgggccctc ctggtccacc aggacttcca ggacctaagg ggaatatggg
901 cttaaatttc cagggaccca aaggtgaaaa aggtgagcaa ggtcttcagg gcccacctgg
961 gccacctggg cagatcagtg aacagaaaag accaattgat gtagagtttc agaaaggaga
1021 tcagggactt cctggtgacc gagggcctcc tggacctcca gggatacgtg gtcctccagg
1081 tcccccaggt ggtgagaaag gtgagaaggg tgagcaagga gagccaggca aaagaggtaa
1141 accaggcaaa gatggagaaa atggccaacc aggaattcct ggtttgcctg gtgatcctgg
1201 ttaccctggt gaacccggaa gggatggtga aaagggccaa aaaggtgaca ctggcccacc
1261 tggacctcct ggacttgtaa ttcctagacc tgggactggt ataactatag gagaaaaagg
1321 aaacattggg ttgcctgggt tgcctggaga aaaaggagag cgaggatttc ctggaataca
1381 gggtccacct ggccttcctg gacctccagg ggctgcagtt atgggtcctc ctggccctcc
1441 tggatttcct ggagaaaggg gtcagaaagg tgatgaagga ccacctggaa tttccattcc
1501 tggacctcct ggacttgacg gacagcctgg ggctcctggg cttccagggc ctcctggccc
1561 tgctggccct cacattcctc ctagtgatga gatatgtgaa ccaggccctc caggcccccc
1621 aggatctcca ggtgataaag gactccaagg agaacaagga gtgaaaggtg acaaaggtga
1681 cacttgcttc aactgcattg gaactggtat ttcagggcct ccaggtcaac ctggtttgcc
1741 aggtctccca ggtcctccag gatctcttgg tttccctgga cagaaagggg aaaaaggaca
1801 agctggtgca actggtccca aaggattacc aggcattcca ggagctccag gtgctccagg
1861 ctttcctgga tctaaaggtg aacctggtga tatcctcact tttccaggaa tgaagggtga
1921 caaaggagag ttgggttccc ctggagctcc agggcttcct ggtttacctg gcactcctgg
1981 acaggatgga ttgccagggc ttcctggccc gaaaggagag cctggtggaa ttacttttaa
2041 gggtgaaaga ggtccccctg ggaacccagg tttaccaggc ctcccaggga atatagggcc
2101 tatgggtccc cctggtttcg gccctccagg cccagtaggt gaaaaaggca tacaaggtgt
2161 ggcaggaaat ccaggccagc caggaatacc aggtcctaaa ggggatccag gtcagactat
2221 aacccagccg gggaagcctg gcttgcctgg taacccaggc agagatggtg atgtaggtct
2281 tccaggtgac cctggacttc cagggcaacc aggcttgcca gggatacctg gtagcaaagg
2341 agaaccaggt atccctggaa ttgggcttca tggaccacct ggtcccaaag gctttcctgg
2401 aattccagga cctccaggag cacctgggac acctggaaga attggtctag aaggccctcc
2461 tgggccaccc ggctttccag gaccaaaggg tgaaccagga tttgcattac ctgggccacc
2521 tgggccacca ggacttccag gtttcaaagg agcacttggt ccaaaaggtg atcgtggttt
2581 cccaggacct ccgggtcctc caggacgcac tggcttagat gggctccctg gaccaaaagg
2641 tgatgttgga ccaaatggac aacctggacc aatgggacct cctgggctgc caggaatagg
2701 tgttcaggga ccaccaggac caccagggat tcctgggcca ataggtcaac ctggtttaca
2761 tggaatacca ggagagaagg gggatccagg acctcctgga cttgatgttc caggaccccc
2821 aggtgaaaga ggcagtcgag ggatccccgg agcacctggt cctataggac ctccaggatc
2881 accagggctt ccaggaaaag caggtgcctc tggatttcca ggtaccaaag gtgaaatggg
2941 tatgatggga cctccaggcc caccaggacc tttgggaatt cctggcagga gtggtgtacc
3001 tggtcttaaa ggtgatgatg gcttgcaggg tcagccagga cttcctggcc ctacaggaga
3061 aaaaggtagt aaaggagagc gtggccttcc aggccctcct ggaccaatgg atccaaatct
3121 tctgggctca aaaggagaga agggggaacc tggcttacca ggtatacctg gagtttcagg
3181 gccaaaaggt tatcagggtt tgcctggaga cccagggcaa cctggactga gtggacaacc
3241 tggattacca ggaccaccag gtcccaaagg taaccctggt ctccctggac agccaggtct
3301 tataggacct cctggactta aaggaaccat cggtgatatg ggttttccag ggcctcaggg
3361 tgtggaaggg cctcctggac cttctggagt tcctggacaa cctggctccc caggattacc
3421 tggacagaaa ggcgacaaag gtgatcctgg tatttcaagc attggtcttc caggtcttcc
3481 tggtccaaag ggtgagcctg gtctgcctgg atacccaggg aaccctggta tcaaaggttc
3541 tgtgggagat cctggtttgc ccggattacc aggaacccct ggagcaaaag gacaaccagg
3601 ccttcctgga ttcccaggaa ccccaggccc tcctggacca aaaggtatta gtggccctcc
3661 tgggaacccc ggccttccag gagaacctgg tcctgtaggt ggtggaggtc atcctgggca
3721 accagggcct ccaggcgaaa aaggcaaacc cggtcaagat ggtattcctg gaccagctgg
3781 acagaagggt gaaccaggtc aaccaggctt tggaaaccca ggaccgcctg gacttccagg
3841 actttctggc caaaagggtg atggaggatt acctgggatt ccaggaaatc ctggccttcc
3901 aggtccaaag ggcgaaccag gctttcacgg tttccctggt gtgcagggtc ccccaggccc
3961 tcctggttct ccgggtccag ctctggaagg acctaaaggc aaccctgggc cccaaggtcc
4021 tcctgggaga ccaggtccta caggttttca aggtctacca ggtccagaag gtcctccagg
4081 tctccctgga aatggaggta ttaaaggaga gaagggaaat ccaggccaac ctgggctacc
4141 tggcttgcct ggtttgaaag gagatcaagg accaccagga ctccagggta atcctggccg
4201 gccgggtctc aatggaatga aaggagatcc tggtctccct ggtgttccag gattcccagg
4261 catgaaagga cccagtggag tacctggatc agctggccct gagggggaac cgggacttat
4321 tggtcctcca ggtcctcctg gattacctgg tccttcagga cagagtatca taattaaagg
4381 agatgctggt cctccaggaa tccctggcca gcctgggcta aagggtctac caggacccca
4441 aggacctcaa ggcttaccag gtccaactgg ccctccagga gatcctggac gcaatggact
4501 ccctggcttt gatggtgcag gagggcgcaa aggagaccca ggtctgccag gacagccagg
4561 tacccgtggt ttggatggtc cccctggtcc agatggattg caaggtcccc caggtccccc
4621 tggaacctcc tctgttgcac atggatttct tattacacgc cacagccaga caacggatgc
4681 accacaatgc ccacagggaa cacttcaggt ctatgaaggc ttttctctcc tgtatgtaca
4741 aggaaataaa agagcccacg gtcaagactt ggggacggct ggcagctgcc ttcgtcgctt
4801 tagtaccatg cctttcatgt tctgcaacat caataatgtt tgcaactttg cttcaagaaa
4861 tgactattct tactggctct ctaccccaga gcccatgcca atgagcatgc aacccctaaa
4921 gggccagagc atccagccat tcattagtcg atgtgcagta tgtgaagctc cagctgtggt
4981 gatcgcagtt cacagtcaga cgatccagat tccccattgt cctcagggat gggattctct
5041 gtggattggt tattccttca tgatgcatac aagtgcaggg gcagaaggct caggtcaagc
5101 cctagcctcc cctggttcct gcttggaaga gtttcgttca gctcccttca tcgaatgtca
5161 tgggaggggt acctgtaact actatgccaa ctcctacagc ttttggctgg caactgtaga
5221 tgtgtcagac atgttcagta aacctcagtc agaaacgctg aaagcaggag acttgaggac
5281 acgaattagc cgatgtcaag tgtgcatgaa gaggacataa cattttgaag aattcctttt
5341 gtgttttaaa atgtgatata tatatatata aaattcctag gatgcagtgt ctcattgtcc
5401 ccaactttac tactgctgcc gtcaatggtg ctactatata tgatcaagat aacatgctga
5461 ctagtaacca tgaagattca gatgtacctc agcaatgcgc cagagcaaag tctctattat
5521 ttttctacta aagaaataag gaagtgaatt tactttttgg gtccagaatg actttctcca
5581 agaattataa gatgaaaatt atatattttg cccagttact aaaatggtac attaaaaatt
5641 caattaagag aagagtcaca ttgagtaaaa taaaagactg cagtttgtgg gaagaattat
5701 ttttcacggt gctactaatc ctgctgtatc ccgggttttt aatataaagg tgttaagctt
5761 attttgcttt gtaagtaaag aatgtgtata ttgtgaacag ccttttagct caaaatgttg
5821 agtcatttac atatgacata gcatgaatca ctatttacag aaaatgtagg aaaccctaga
5881 atacagacag caatatttta tattcatgtt tatcaaagtg agaggactta tattcctaca
5941 tcaagttact actgagagta aatttatttt gagttttatc ccgtaagttc tgttttgatt
6001 ttttttaaaa aacaaaccct tttagtcact ttaatcagaa ttttaaatgt tcatgttaca
6061 taccaaatta taatatctaa tggagcaatt tgtcttttgc tatattctcc aagattatct
6121 cttaagacca tatgccccct gttttaatgt ttcttacatc ttgtttttac taatttctga
6181 ctggacaaag ttcttccaaa caattctgag aaacaaaaac acacacgcag aattaacaat
6241 tcttttccct gtgcttctta tgtaagaatc ctcctgtggc ctctgcttgt acagaactgg
6301 gaaacaacac ttggttagtc tcttttaagt tacaaaaagc caattgatgt ttcttattct
6361 ttttaaattt taaatatttt gttataaata ctcacaggat accttatttc cctagctatc
6421 atctcctgac ttaatgtttt ttaaacccac caatataaat ttaattaaag atatatgttg
6481 caaaaaaaaa aaaaaa
//