LOCUS BC151220 6517 bp mRNA linear HUM 24-JUL-2007
DEFINITION Homo sapiens collagen, type IV, alpha 1, mRNA (cDNA clone
MGC:165004 IMAGE:40148649), complete cds.
ACCESSION BC151220
VERSION BC151220.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6517)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6517)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Novartis Institute for Biomedical Research
cDNA Library Preparation: Novartis Institute for Biomedical
Research
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 306 Row: l Column: 7.
FEATURES Location/Qualifiers
source 1..6517
/db_xref="H-InvDB:HIT000435929"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:165004 IMAGE:40148649"
/tissue_type="Donated clones,Novartis FGA collection"
/clone_lib="NIH_MGC_417"
/lab_host="DH5a"
/note="Vector: pCMV-SPORT6"
gene 1..6517
/gene="COL4A1"
/gene_synonym="arresten"
/db_xref="GeneID:1282"
/db_xref="HGNC:HGNC:2202"
/db_xref="MIM:120130"
CDS 115..5124
/gene="COL4A1"
/gene_synonym="arresten"
/codon_start=1
/product="COL4A1 protein"
/protein_id="AAI51221.1"
/db_xref="GeneID:1282"
/db_xref="HGNC:HGNC:2202"
/db_xref="MIM:120130"
/translation="MGPRLSVWLLLLPAALLLHEEHSRAAAKGGCAGSGCGKCDCHGV
KGQKGERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYP
GNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPG
EILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG
QMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGE
KGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIV
IGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGE
KGDRGFPGTSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQ
PGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGV
AGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPGFPGQPGMPGRAGSPGRDGH
PGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPG
GPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKG
AVGQPGIGFPGPPGPKGVDGLPGDMGPPGTPGRPGFNGLPGNPGVQGQKGEPGVGLPG
LKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGV
PGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQ
SGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGFPGSS
GPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGDPG
TPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI
PGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIG
IPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGP
AGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPG
SKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGLPGPMGPPGLPGID
GVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGPKG
LPGLQGIKGDQGDHGVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEGPPGLKGLQGLPG
PKGQQGVTGLVGIPGPPGIPGFDGAPGQKGEMGPAGPTGPRGFPGPPGPDGLPGSMGP
PGTPSVDHGFLVTRHSQTIDDPQCPSGTKILYHGYSLLYVQGNERAHGQDLGTAGSCL
RKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCE
APAMVMAVHSQTIQIPPCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRS
APFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR
T"
BASE COUNT 1665 a 1656 c 1911 g 1285 t
ORIGIN
1 ccgccgcacc cgggacggtg cgtagcgctg gaagtccggc cttccgagag ctagctgtcc
61 gccgcggccc ccgcacgccg ggcagccgtc cctcgccgcc tcgggcgcgc caccatgggg
121 ccccggctca gcgtctggct gctgctgctg cccgccgccc ttctgctcca cgaggagcac
181 agccgggccg ctgcgaaggg tggctgtgct ggctctggct gtggcaaatg tgactgccat
241 ggagtgaagg gacaaaaggg tgaaagaggc ctcccggggt tacaaggtgt cattgggttt
301 cctggaatgc aaggacctga ggggccacag ggaccaccag gacaaaaggg tgatactgga
361 gaaccaggac tacctggaac aaaagggaca agaggacctc cgggagcatc tggctaccct
421 ggaaacccag gacttcccgg aattcctggc caagacggcc cgccaggccc cccaggtatt
481 ccaggatgca atggcacaaa gggggagaga gggccgctcg ggcctcctgg cttgcctggt
541 ttcgctggaa atcccggacc accaggctta ccagggatga agggtgatcc aggtgagata
601 cttggccatg tgcccgggat gctgttgaaa ggtgaaagag gatttcccgg aatcccaggg
661 actccaggcc caccaggact gccagggctt caaggtcctg ttgggcctcc aggatttacc
721 ggaccaccag gtcccccagg ccctcccggc cctccaggtg aaaagggaca aatgggctta
781 agttttcaag gaccaaaagg tgacaagggt gaccaagggg tcagtgggcc tccaggagta
841 ccaggacaag ctcaagttca agaaaaagga gacttcgcca ccaagggaga aaagggccaa
901 aaaggtgaac ctggatttca ggggatgcca ggggtcggag agaaaggtga acccggaaaa
961 ccaggaccca gaggcaaacc cggaaaagat ggtgacaaag gggaaaaagg gagtcccggt
1021 tttcctggtg aacccgggta cccaggactc ataggccgcc agggcccgca gggagaaaag
1081 ggtgaagcag gtcctcctgg cccacctgga attgttatag gcacaggacc tttgggagaa
1141 aaaggagaga ggggctaccc tggaactccg gggccaagag gagagccagg cccaaaaggt
1201 ttcccaggac taccaggcca acccggacct ccaggcctcc ctgtacctgg gcaggctggt
1261 gcccctggct tccctggtga aagaggagaa aaaggtgacc gaggatttcc tggtacatct
1321 ctgccaggac caagtggaag agatgggctc ccgggtcctc ctggttcccc tgggccccct
1381 gggcagcctg gctacacaaa tggaattgtg gaatgtcagc ccggacctcc aggtgaccag
1441 ggtcctcctg gaattccagg gcagccagga tttataggcg aaattggaga gaaaggtcaa
1501 aaaggagaga gttgcctcat ctgtgatata gacggatatc gggggcctcc cgggccacag
1561 ggacccccgg gagaaatagg tttcccaggg cagccagggg ccaagggcga cagaggtttg
1621 cctggcagag atggtgttgc aggagtgcca ggccctcaag gtacaccagg gctgataggc
1681 cagccaggag ccaaggggga gcctggtgag ttttatttcg acttgcggct caaaggtgac
1741 aaaggagacc caggctttcc aggacagccc ggcatgccag ggagagcggg ttctcctgga
1801 agagatggcc atccgggtct tcctggcccc aagggctcgc cgggttctgt aggattgaaa
1861 ggagagcgtg gcccccctgg aggagttgga ttcccaggca gtcgtggtga caccggcccc
1921 cctgggcccc caggatatgg tcctgctggt cccattggtg acaaaggaca agcaggcttt
1981 cctggaggcc ctggatcccc aggcctgcca ggtccaaagg gtgaaccagg aaaaattgtt
2041 cctttaccag gcccccctgg agcagaagga ctgccggggt ccccaggctt cccaggtccc
2101 caaggagacc gaggctttcc cggaacccca ggaaggccag gcctgccagg agagaagggc
2161 gctgtgggcc agccaggcat tggatttcca gggccccccg gccccaaagg tgttgacggc
2221 ttacctggag acatggggcc accagggact ccaggtcgcc cgggatttaa tggcttacct
2281 gggaacccag gtgtgcaggg ccagaaggga gagcctggag ttggtctacc gggactcaaa
2341 ggtttgccag gtcttcccgg cattcctggc acacccgggg agaaggggag cattggggta
2401 ccaggcgttc ctggagaaca tggagcgatc ggaccccctg ggcttcaggg gatcagaggt
2461 gaaccgggac ctcctggatt gccaggctcc gtggggtctc caggagttcc aggaataggc
2521 ccccctggag ctaggggtcc ccctggagga cagggaccac cggggttgtc aggccctcct
2581 ggaataaaag gagagaaggg tttccccgga ttccctggac tggacatgcc gggccctaaa
2641 ggagataaag gggctcaagg actccctggc ataacgggac agtcggggct ccctggcctt
2701 cctggacagc agggggctcc tgggattcct gggtttccag gttccaaggg agaaatgggc
2761 gtcatgggga cccccgggca gccgggctca ccaggaccag tgggtgctcc tggattaccg
2821 ggtgaaaaag gggaccatgg ctttccgggc tcctcaggac ccaggggaga ccctggcttg
2881 aaaggtgata agggggatgt cggtctccct ggcaagcctg gctccatgga taaggtggac
2941 atgggcagca tgaagggcca gaaaggagac caaggagaga aaggacaaat tggaccaatt
3001 ggtgagaagg gatcccgagg agaccctggg accccaggag tgcctggaaa ggacgggcag
3061 gcaggacagc ctgggcagcc aggacctaaa ggtgatccag gtataagtgg aaccccaggt
3121 gctccaggac ttccgggacc aaaaggatct gttggtggaa tgggcttgcc aggaacacct
3181 ggagagaaag gtgtgcctgg catccctggc ccacaaggtt cacctggctt acctggagac
3241 aaaggtgcaa aaggagagaa agggcaggca ggcccacctg gcataggcat cccaggactg
3301 cgtggtgaaa agggagatca agggatagcg ggtttcccag gaagccctgg agagaaggga
3361 gaaaaaggaa gcattgggat cccaggaatg ccagggtccc caggccttaa agggtctccc
3421 gggagtgttg gctatccagg aagtcctggg ctacctggag aaaaaggtga caaaggcctc
3481 ccaggattgg atggcatccc tggtgtcaaa ggagaagcag gtcttcctgg gactcctggc
3541 cccacaggcc cagctggcca gaaaggggag ccaggcagtg atggaatccc ggggtcagca
3601 ggagagaagg gtgaaccagg tctaccagga agaggattcc cagggtttcc aggggccaaa
3661 ggagacaaag gttcaaaggg tgaggtgggt ttcccaggat tagccgggag cccaggaatt
3721 cctggatcca aaggagagca aggattcatg ggtcctccgg ggccccaggg acagccgggg
3781 ttaccgggat ccccaggcca tgccacggag gggcccaaag gagaccgcgg acctcagggc
3841 cagcctggcc tgccaggact tccgggaccc atggggcctc cagggcttcc tgggattgat
3901 ggagttaaag gtgacaaagg aaatccaggc tggccaggag cacccggtgt cccagggccc
3961 aagggagacc ctggattcca gggcatgcct ggtattggtg gctctccagg aatcacaggc
4021 tctaagggtg atatggggcc tccaggagtt ccaggatttc aaggtccaaa aggtcttcct
4081 ggcctccagg gaattaaagg tgatcaaggc gatcacggcg tcccgggagc taaaggtctc
4141 ccgggtcctc ctggcccccc aggtccttac gacatcatca aaggggagcc cgggctccct
4201 ggtcctgagg gccccccagg gctgaaaggg cttcagggac tgccaggccc gaaaggccag
4261 caaggtgtta caggattggt gggtatacct ggacctccag gtattcctgg gtttgacggt
4321 gcccctggcc agaaaggaga gatgggacct gccgggccta ctggtccaag aggatttcca
4381 ggtccaccag gccccgatgg gttgccagga tccatggggc ccccaggcac cccatctgtt
4441 gatcacggct tccttgtgac caggcatagt caaacaatag atgacccaca gtgtccttct
4501 gggaccaaaa ttctttacca cgggtactct ttgctctacg tgcaaggcaa tgaacgggcc
4561 catggccagg acttgggcac ggctggcagc tgcctgcgca agttcagcac aatgcccttc
4621 ctgttctgca atattaacaa cgtgtgcaac tttgcatcac gaaatgacta ctcgtactgg
4681 ctgtccaccc ctgagcccat gcccatgtca atggcaccca tcacggggga aaacataaga
4741 ccatttatta gtaggtgtgc tgtgtgtgag gcgcctgcca tggtgatggc cgtgcacagc
4801 cagaccattc agatcccacc gtgccccagc gggtggtcct cgctgtggat cggctactct
4861 tttgtgatgc acaccagcgc tggtgcagaa ggctctggcc aagccctggc gtcccccggc
4921 tcctgcctgg aggagtttag aagtgcgcca ttcatcgagt gtcacggccg tgggacctgc
4981 aattactacg caaacgctta cagcttttgg ctcgccacca tagagaggag cgagatgttc
5041 aagaagccta cgccgtccac cttgaaggca ggggagctgc gcacgcacgt cagccgctgc
5101 caagtctgta tgagaagaac ataatgaagc ctgactcagc taatgtcaca acatggtgct
5161 acttcttctt ctttttgtta acagcaacga accctagaaa tatatcctgt gtacctcact
5221 gtccaatatg aaaaccgtaa agtgccttat aggaatttgc gtaactaaca caccctgctt
5281 cattgacctc tacttgctga aggagaaaaa gacagcgata agctttcaat agtggcatac
5341 caaatggcac ttttgatgaa ataaaatatc aatattttct gcaatccaat gcactgatgt
5401 gtgaagtgag aactccatca gaaaaccaaa gggtgctagg aggtgtgggt gccttccata
5461 ctgtttgccc attttcattc ttgtattata attaattttc tacccccaga gataaatgtt
5521 tgtttatatc actgtctagc tgtttcaaaa tttaggtccc ttggtctgta caaataatag
5581 caatgtaaaa atggtttttt gaacctccaa atggaattac agactcagta gccatatctt
5641 ccaacccccc agtataaatt tctgtctttc tgctatgtgt ggtactttgc agctgctttt
5701 gcagaaatca caattttcct gtggaataaa gatggtccaa aaatagtcaa aaattaaata
5761 tatatatata ttagtaattt atatagatgt cagcaattag gcagatcaag gtttagttta
5821 acttccactg ttaaaataaa gcttacatag ttttcttcct ttgaaagact gtgctgtcct
5881 ttaacatagg tttttaaaga ctaggatatt gaatgtgaaa catccgtttt cattgttcac
5941 ttctaaacca aaaattatgt gttgccaaaa ccaaacccag gttcatgaat atggtgtcta
6001 ttatagtgaa acatgtactt tgagcttatt gtttttattc tgtattaaat attttcaggg
6061 ttttaaacac taatcacaaa ctgaatgact tgacttcaaa agcaacaacc ttaaaggccg
6121 tcatttcatt agtattcctc attctgcatc ctggcttgaa aaacagctct gttgaatcac
6181 agtatcagta ttttcacacg taagcacatt cgggccattt ccgtggtttc tcatgagctg
6241 tgttcacaga cctcagcagg gcatcgcatg gaccgcagga gggcagattc ggaccactag
6301 gcctgaaatg acatttcact aaaagtctcc aaaacatttc taagactact aaggcctttt
6361 atgtaatttc tttaaatgtg tatttcttaa gaattcaaat ttgtaataaa actatttgta
6421 taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
6481 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//