LOCUS BC151135 3156 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens gypsy retrotransposon integrase 1, mRNA (cDNA clone
MGC:184047 IMAGE:9057035), complete cds.
ACCESSION BC151135
VERSION BC151135.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3156)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3156)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 13 Row: J Column: 11
single stranded.
FEATURES Location/Qualifiers
source 1..3156
/db_xref="H-InvDB:HIT000503359"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:184047 IMAGE:9057035"
/tissue_type="Brain, cerebral cortex, PCR rescued clones"
/clone_lib="NIH_MGC_287"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: GAAAACCT"
gene 1..3156
/gene="GIN1"
/gene_synonym="GIN-1"
/gene_synonym="TGIN1"
/db_xref="GeneID:54826"
/db_xref="HGNC:HGNC:25959"
CDS 23..1591
/gene="GIN1"
/gene_synonym="GIN-1"
/gene_synonym="TGIN1"
/codon_start=1
/product="gypsy retrotransposon integrase 1"
/protein_id="AAI51136.1"
/db_xref="GeneID:54826"
/db_xref="HGNC:HGNC:25959"
/translation="MVRSGKNGDLHLKQIAYYKRTGEYHSTTLPSERSGIRRAAKKFV
FKEKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWT
SVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVY
AIIMTDLFTKWIVILPLCDVSASEVSKAIINIFFLYGPPQKIIMDQRDEFIQQINIEL
YRLFGIKQIVISHTSGTVNPMESTPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTH
LEPTKNTPYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKEADKIMENKTTSL
GQMENNNLDELNKSKIIVKKKPKQLNPFHLKVGHEVLRQRKNWWKDGRFQSEWVGPCV
IDYITESGCAVLRDNTGVRLKRPIKMSHLKPYIRESSEQESLYLLQGSVVADHDYIGL
PEIPIGAYQANILVEDATIGIVDNELLTSSKDRELLEYRNTKISPLIDDHSSLEKQTF
SLLDSSNQVLEYLS"
BASE COUNT 1108 a 527 c 614 g 907 t
ORIGIN
1 tttaggacca cctcggttca caatggtccg tagtggaaaa aatggtgacc ttcatcttaa
61 acagattgca tattacaaac gaactggtga atatcattca actacactgc caagtgagag
121 aagtggcata agaagagcag caaaaaaatt tgtcttcaaa gaaaaaaagc tgttttatgt
181 tggaaaagac agaaaacaaa atcgtttggt aattgtttca gaagaggaaa aaaagaaagt
241 cttaagagaa tgccatgaaa atgacagtgg agctcatcat ggtatatcca ggaccctcac
301 tctggtagaa tccaattatt attggacatc tgtgaccaat gatgtcaaac agtgggtata
361 tgcttgtcag cattgccaag tggcaaaaaa tacagttatt gtagcaccga aacagcacct
421 tctcaaggtg gaaaatccat ggagtttagt tactgttgat ctgatggggc cttttcatac
481 aagcaacaga agtcatgtat atgctataat catgacagat ttgttcacca aatggattgt
541 gattttgcct ctatgtgatg tttcagcatc agaagtttct aaagctatta tcaatatatt
601 tttcttatat ggacctcctc agaaaataat aatggaccaa agagatgaat tcattcaaca
661 gatcaatatt gaactgtaca gattgtttgg cataaagcaa attgtaattt ctcacacctc
721 tggaactgtt aacccaatgg aaagtacacc taacacaatc aaagcatttc tctccaaaca
781 ctgtgctgac cacccaaaca attgggatga tcacctatca gctgtttcat ttgccttcaa
841 tgtaactcac ttggaaccta ctaaaaatac accatatttt caaatgttta gtcgaaatcc
901 ttatatgcct gagacttcag atagtcttca tgaagtggat ggtgataata caagtatgtt
961 tgccaaaatt ctagatgcaa ttaaagaagc tgataaaata atggagaata agacaacttc
1021 actgggccag atggagaaca acaatttgga tgaactaaat aaaagcaaga tcattgttaa
1081 aaagaaaccc aaacaattaa atccatttca tttaaaagtg ggtcatgaag ttttaagaca
1141 aaggaaaaat tggtggaagg atggtcgttt tcagtctgaa tgggttggtc cttgtgtcat
1201 agactatatt acagaaagtg gatgtgctgt cctgagagac aacactgggg ttagactgaa
1261 aagacctatc aaaatgtccc accttaagcc ctacataaga gaatccagtg aacaagaaag
1321 tctttatctc ttgcaaggtt cagtagtggc agatcatgac tacattggat tgcctgaaat
1381 tccgattgga gcatatcaag caaatattct ggtggaagat gcaactattg gtatagtcga
1441 taatgaatta ctgacatcaa gcaaggatcg tgaactatta gaatatagaa atacgaaaat
1501 ctctccattg atagacgatc atagttctct tgaaaagcag actttcagtc tgttggactc
1561 ttcaaaccag gttcttgaat acttaagtta gtaaatacca aaatttattt aaagtgcttg
1621 tttagaatat aaattcttaa tgatatctta ttcattaaaa acgttgtata gaagaagtat
1681 cttgacacat tcttaatgac tatattctga aggtttattt tatagttctt atctaaaatt
1741 atgccacatt tgaatatcag tatacgtaca tatgaaggca aaggaagcat gtaatatata
1801 gaattcactt tttcttctaa aaagtgaaca ggcaaagcac ccctacttct tgggaaataa
1861 attccagccc aaatctctca aacctttgta tggttttggc accgtttcta agttttaaat
1921 tttctgaaat tctctaccat ttaaacagta agtttgaact accttgaatg gaattgataa
1981 atactgaatc aactgtaaca atgaatgaaa tgaagcttct ttctgtttca ttagaacttc
2041 taaaaacaag attgtatgaa aaaatatagg gttatttaat aggctttcac agaatattgg
2101 taatttcaaa ttatctaatt ggttagatag ggtcaggatt agggtctgaa actatgtatt
2161 ggttgggaaa caatttgttt attttcatac tatatattaa agataaaacc atcgaccagg
2221 catggtggcc cacacctgta atcccagcgc tttgggaagc caaggcagga tgatcacttg
2281 accccaggag ttcgagacca gcctgggcaa cacggggaga ccctatctct acagaaaaat
2341 gtttaaaaat tagccaggtg tggtggcaca tgcctgcggt cccagctact caggaggctg
2401 aagtaggagc attgcttgac cccaggaggt cgaggctgca gtgagccgcg ctcatgccac
2461 agctctccag cctgggcgac agggcaagac ctgtctcaac aacaacaaca aaagtatccg
2521 ttaagaattt tttctgcaat cataaaatca taaaataacc agtatcaaag attttaaact
2581 gtaatttcta tgatattcat aaatatagaa taaatattgt tcaataaata tttattctaa
2641 agcactatga aaagaactgt gggaaaagta aaagatgagt caaacgtgta cctcattctt
2701 ataaaggact tactgtctgg taggtaataa actatgtaag ccatgtacaa cacaagttaa
2761 ggcatgctaa attgcagaag acaggtgtag ataatgtact tagggaggca aaaagagaga
2821 agttgttttt acataggaaa tttgtgttta tccttatgga agaaggatca tttaagcttg
2881 accttgaaga atgtatagga tttggtaaat ggatacaaaa gaattagggg agaagtaata
2941 cacagaaatg gaaaagtatt gtaatgattc ataaaaaggc agggcttctt gttgtctaca
3001 ctgcctcggg tataaagtga agaagcaaga taatgaggga taaagctgaa aaggtaagta
3061 ggaaacctta tggagagctt tgaatactat taaggattga tatgtgcccc tcccaaaatt
3121 tgtgttgaag tcttaacccc caccacctca aaatgt
//