LOCUS BC150624 7571 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens aggrecan, mRNA (cDNA clone MGC:183534 IMAGE:9056994), complete cds. ACCESSION BC150624 VERSION BC150624.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 7571) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 7571) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-JUL-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 13 Row: O Column: 10 single stranded. FEATURES Location/Qualifiers source 1..7571 /db_xref="H-InvDB:HIT000503320" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:183534 IMAGE:9056994" /tissue_type="Pooled, cerebellum, kidney, placenta, testis, lung, colon, liver, heart, thyroid, bladder, uterus, PCR rescued clones" /clone_lib="NIH_MGC_363" /lab_host="DH10B" /note="Vector: pCR-XL-TOPO; Clone identification sequence tag: TAGCCTTT" gene 1..7571 /gene="ACAN" /gene_synonym="AGCAN" /gene_synonym="CSPGCP" /gene_synonym="SEDK" /db_xref="GeneID:176" /db_xref="HGNC:HGNC:319" /db_xref="MIM:155760" CDS 59..7480 /gene="ACAN" /gene_synonym="AGCAN" /gene_synonym="CSPGCP" /gene_synonym="SEDK" /codon_start=1 /product="ACAN protein" /protein_id="AAI50625.1" /db_xref="GeneID:176" /db_xref="HGNC:HGNC:319" /db_xref="MIM:155760" /translation="MTTLLWVFVTLRVITAAVTVETSDHDNSLSVSIPQPSPLRVLLG TSLTIPCYFIDPMHPVTTAPSTAPLAPRIKWSRVSKEKEVVLLVATEGRVRVNSAYQD KVSLPNYPAIPSDATLEVQSLRSNDSGVYRCEVMHGIEDSEATLEVVVKGIVFHYRAI STRYTLDFDRAQRACLQNSAIIATPEQLQAAYEDGFHQCDAGWLADQTVRYPIHTPRE GCYGDKDEFPGVRTYGIRDTNETYDVYCFAEEMEGEVFYATSPEKFTFQEAANECRRL GARLATTGQLYLAWQAGMDMCSAGWLADRSVRYPISKARPNCGGNLLGVRTVYVHANQ TGYPDPSSRYDAICYTGEDFVDIPENFFGVGGEEDITVQTVTWPDMELPLPRNITEGE ARGSVILTVKPIFEVSPSPLEPEEPFTFAPEIGATAFAEVENETGEATRPWGFPTPGL GPATAFTSEDLVVQVTAVPGQPHLPGGVVFHYRPGPTRYSLTFEEAQQACLRTGAVIA SPEQLQAAYEAGYEQCDAGWLRDQTVRYPIVSPRTPCVGDKDSSPGVRTYGVRPSTET YDVYCFVDRLEGEVFFATRLEQFTFQEALEFCESHNATLATTGQLYAAWSRGLDKCYA GWLADGSLRYPIVTPRPACGGDKPGVRTVYLYPNQTGLPDPLSRHHAFCFRGISAVPS PGEEEGGTPTSPSGVEEWIVTQVVPGVAAVPVEEETTAVPSGETTAILEFTTEPENQT EWEPAYTPVGTSPLPGILPTWPPTGAATEESTEGPSATEVPSASEEPSPSEVPFPSEE PSPSEEPFPSVRPFPSVELFPSEEPFPSKEPSPSEEPSASEEPYTPSPPVPSWTELPS SGEESGALDVSGDFTGSGDVSGHLDFSGQLSGDRASGLPSGDLDSSGLTSTVGSGLPV ESGLPSGDEERIEWPITPTVGELPTGAEILEGSASGVGDLSGLPSGEVLETSASGVGD LSGLPSGEVLETTAPGVEDISGLPSGEVLETTAPGVEDISGLPSGEVLETTAPGVEDI SGLPSGEVLETTAPGVEDISGLPSGEVLETAAPGVEDISGLPSGEVLETAAPGVEDIS GLPSGEVLETAAPGVEDISGLPSGEVLETAAPGVEDISGLPSGEVLETAAPGVEDISG LPSGEVLETAAPGVEDISGLPSGEVLETAAPGVEDISGLPSGEVLETAAPGVEDISGL PSGEVLETAAPGVEDISGLPSGEVLETAAPGVEDISGLPSGEVLETAAPGVEDISGLP SGEVLETAAPGVEDISGLPSGEVLETAAPGVEDISGLPSGEVLETAAPGVEDISGLPS GEVLETAAPGVEDISGLPSGEVLETAAPGVEDISGLPSGEVLETAAPGVEDISGLPSG EVLETAAPGVEEISGLPSGEVLETTAPGVDEISGLPSGEVLETTAPGVEEISGLPSGE VLETSTSAVGDLSGLPSGGEVLEISVSGVEDISGLPSGEVVETSASGIEDVSALPSGE GLETSASGVEDLSRLPSGEEVLEISASGFGDLSGLPSGGEGLETSASEVGTDLSGLPS GREGLETSASGAEDLSGLPSGKEDLVGSASGDLDLGKLPSGTLGSGQAPETSGLPSGF SGEYSGVDLGSGPPSGLPDFSGLPSGFPTVSLVDSTLVEVVTASTASELEGRGTIGIS GAGEISGLPSSELDISGRASGLPSGTELSGQASGSPDVSGEIPGLFGVSGQPSGFPDT SGETSGVTELSGLSSGQPGVSGEASGVLYGTSQPFGITDLSGETSGVPDLSGQPSGLP GFSGATSGVPDLVSGTTSGSGESSGITFVDTSLVEVAPTTFKEEEGLGSVELSGLPSG EADLSGKSGMVDVSGQFSGTVDSSGFTSQTPEFSGLPSGIAEVSGESSRAEIGSSLPS GAYYGSGTPSSFPTVSLVDRTLVESVTQAPTAQEAGEGPSGILELSGAHSGAPDMSGE HSGFLDLSGLQSGLIEPSGEPPGTPYFSGDFASTTNVSGESSVAMGTSGEASGLPEVT LITSEFVEGVTEPTISQELGQRPPVTHTPQLFESSGKVSTAGDVSGATPVLPGSGVEV SSVPESSSETSAYPEAGFGASAAPEASREDSGSPDLSETTSAFHEANLERSSGLGVSG STLTFQEGEASAAPEVSGESTTTSDVGTEAPGLPSATPTASGDRTEISGDLSGHTSQL GVVISTSIPESEWTQQTQRPAETHLEIESSSLLYSGEETHTVETATSPTDASIPASPE WKRESESTAADQEVCEEGWNKYQGHCYRHFPDRETWVDAERRCREQQSHLSSIVTPEE QEFVNNNAQEYQWIGLNDRTIEGDFRWSDGHPMQFENWRPNQPDNFFAAGEDCVVMIW HEKGEWNDVPCNYHLPFTCKKGTVACGEPPVVEHARTFGQKKDRYEINSLVRYQCTEG FVQRHMPTIRCQPSGHWEEPQITCTDPTTYKRRLQKRSSRHPRRSRPSTAH" BASE COUNT 1643 a 2126 c 2229 g 1573 t ORIGIN 1 gccaggtgtg tgggactgaa gttcttggag aagggagtcc aactcttcaa ggtgaactat 61 gaccacttta ctctgggttt tcgtgactct gagggtcatc actgcagctg tcactgtaga 121 aacttcagac catgacaact cgctgagtgt cagcatcccc caaccgtccc cgctgagggt 181 cctcctgggg acctccctca ccatcccctg ctatttcatc gaccccatgc accctgtgac 241 caccgcccct tctaccgccc cactggcccc aagaatcaag tggagccgtg tgtccaagga 301 gaaggaggta gtgctgctgg tggccactga agggcgcgtg cgggtcaaca gtgcctatca 361 ggacaaggtc tcactgccca actacccggc catccccagt gacgccacct tggaagtcca 421 gagcctgcgc tccaatgact ctggggtcta ccgctgcgag gtgatgcatg gcatcgagga 481 cagcgaggcc accctggaag tcgtggtgaa aggcatcgtg ttccattaca gagccatctc 541 tacacgctac accctcgact ttgacagggc gcagcgggcc tgcctgcaga acagtgccat 601 cattgccacg cctgagcagc tgcaggccgc ctacgaagac ggcttccacc agtgtgacgc 661 cggctggctg gctgaccaga ctgtcagata ccccatccac actccccggg aaggctgcta 721 tggagacaag gatgagtttc ctggtgtgag gacgtatggc atccgagaca ccaacgagac 781 ctatgatgtg tactgcttcg ccgaggagat ggagggtgag gtcttttatg caacatctcc 841 agagaagttc accttccagg aagcagccaa tgagtgccgg cggctgggtg cccggctggc 901 caccacgggc cagctctacc tggcctggca ggctggcatg gacatgtgca gcgccggctg 961 gctggccgac cgcagcgtgc gctaccccat ctccaaggcc cggcccaact gcggtggcaa 1021 cctcctgggc gtgaggaccg tctacgtgca tgccaaccag acgggctacc ccgacccctc 1081 atcccgctac gacgccatct gctacacagg tgaagacttt gtggacatcc cagaaaactt 1141 ctttggagtg gggggtgagg aggacatcac cgtccagaca gtgacctggc ctgacatgga 1201 gctgccactg cctcgaaaca tcactgaggg tgaagcccga ggcagcgtga tccttaccgt 1261 aaagcccatc ttcgaggtct cccccagtcc cctggaaccc gaggagccct tcacgtttgc 1321 ccctgaaata ggggccactg ccttcgctga ggttgagaat gagactggag aggccaccag 1381 gccctggggc tttcccacac ctggcctggg ccctgccacg gcattcacca gtgaggacct 1441 cgtcgtgcag gtgaccgctg tccctgggca gccgcatttg ccaggggggg tcgtcttcca 1501 ctaccgcccg ggacccaccc gctactcgct gacctttgag gaggcacagc aggcctgcct 1561 gcgcacgggg gcggtcattg cctcgccgga gcagctccag gccgcctacg aagcaggcta 1621 tgagcagtgt gacgccggct ggctgcggga ccagaccgtc agatacccca ttgtgagccc 1681 acggacccca tgcgtgggtg acaaggacag cagcccaggg gtcaggacct atggcgtgcg 1741 cccatcaaca gagacctacg atgtctactg ctttgtagac agacttgagg gggaggtgtt 1801 cttcgccaca cgccttgagc agttcacctt ccaggaagca ctggagttct gtgaatctca 1861 caatgccacg ctggccacca cgggccagct ctacgccgcc tggagccgcg gcctggacaa 1921 gtgctatgcc ggctggctgg ccgacggcag cctccgctac cccatcgtca ccccaaggcc 1981 tgcctgcggt ggggacaagc caggcgtgag aacggtctac ctctacccta accagacggg 2041 cctcccagac ccactgtccc ggcaccatgc cttctgcttc cgaggcattt cagcggttcc 2101 ttctccagga gaagaagagg gtggcacacc cacatcaccc tctggtgtgg aggagtggat 2161 cgtgacccaa gtggttcctg gtgtggctgc tgtccccgta gaagaggaga caactgctgt 2221 accctcaggg gagactactg ccatcctaga gttcaccacc gagccagaaa accagacaga 2281 atgggaacca gcctataccc cagtgggcac atccccgctg ccagggatcc ttcctacttg 2341 gcctcctact ggcgcagcaa cagaggaaag tacagaaggc ccttctgcaa ctgaagtgcc 2401 ctctgcctca gaggaaccat ccccctcaga ggtgccattc ccctcagagg agccatcccc 2461 ctcagaggaa ccattcccct cagtgaggcc attcccctca gtggagctgt tcccctcaga 2521 ggagccattc ccctccaagg agccatcccc ctcagaggaa ccatcagcct cagaagagcc 2581 gtatacacct tcaccccccg tgcccagctg gactgagctg cccagctctg gggaggaatc 2641 tggggccctt gatgtcagtg gtgacttcac aggcagtgga gatgtttcag gacaccttga 2701 cttcagtggg cagctgtcag gggacagggc aagtggactg ccctctggag acctggactc 2761 cagtggtctt acttccacag tgggctcagg cctgcctgtg gaaagtggac taccctcagg 2821 ggatgaagag agaattgagt ggcccatcac tcctacggtt ggtgaactgc ccactggagc 2881 tgagatccta gagggctctg cctctggagt tggggatctc agtggacttc cttctggaga 2941 agttctagag acctctgcct ctggagtagg agacctcagt gggcttcctt ctggagaagt 3001 tctagagacc actgcccctg gagtagagga catcagcggg cttccttctg gagaagttct 3061 agagactact gcccctggag tagaggacat cagcgggctt ccttctggag aagttctaga 3121 gaccactgcc cctggagtag aggacatcag cgggcttcct tctggagaag ttctagagac 3181 cactgcccct ggagtagagg acatcagcgg gcttccttct ggagaagttc tagagactgc 3241 tgcccctgga gtagaggaca tcagcgggct tccttctgga gaagttctag agactgctgc 3301 ccctggagta gaggacatca gcgggcttcc ttctggagaa gttctagaga ctgctgcccc 3361 tggagtagag gacatcagcg ggcttccttc tggagaagtt ctagagactg ctgcccctgg 3421 agtagaggac atcagcgggc ttccttctgg agaagttcta gagactgctg cccctggagt 3481 agaggacatc agcgggcttc cttctggaga agttctagag actgctgccc ctggagtaga 3541 ggacatcagc gggcttcctt ctggagaagt tctagagact gctgcccctg gagtagagga 3601 catcagcggg cttccttctg gagaagttct agagactgct gcccctggag tagaggacat 3661 cagcgggctt ccttctggag aagttctaga gactgctgcc cctggagtag aggacatcag 3721 cgggcttcct tctggagaag ttctagagac tgctgcccct ggagtagagg acatcagcgg 3781 gcttccttct ggagaagttc tagagactgc tgcccctgga gtagaggaca tcagcgggct 3841 tccttctgga gaagttctag agactgctgc ccctggagta gaggacatca gcgggcttcc 3901 ttctggagaa gttctagaga ctgctgcccc tggagtagag gacatcagcg ggcttccttc 3961 tggagaagtt ctagagactg ctgcccctgg agtagaggac atcagcgggc ttccttctgg 4021 agaagttcta gagactgctg cccctggagt agaggacatc agcgggcttc cttctggaga 4081 agttctagag actgctgccc ctggagtaga ggacatcagc gggcttcctt ctggagaagt 4141 tctagagact gctgcccctg gagtagagga catcagcggg cttccttctg gagaagttct 4201 agagactgct gcccctggag tagaggagat cagcgggctt ccttctggag aagttctaga 4261 gactactgcc cctggagtag atgagatcag tgggcttcct tctggagaag ttctagagac 4321 tactgcccct ggagtagagg agatcagcgg gcttccttct ggagaagttc tagagacttc 4381 tacctctgcg gtaggggacc tcagtggact tccttctgga ggagaagttc tagagatttc 4441 tgtctctgga gtagaggaca tcagtgggct tccttctgga gaggttgtag agacttctgc 4501 ctctggaata gaggatgtca gtgcacttcc ttcaggagaa ggtctagaga cctctgcttc 4561 tggagtagag gacctcagca ggctcccttc tggagaagaa gttctagaga tttctgcctc 4621 tggatttggg gacctcagtg gacttccttc tggaggagaa ggtctagaga cctctgcttc 4681 tgaagtaggg actgacctca gtgggcttcc ttctggaagg gagggtctag agacttcagc 4741 ttctggagct gaggacctca gtgggttgcc ttctggaaaa gaagacttgg tggggtcagc 4801 ttctggagac ttggacttgg gcaaactgcc ttctggaact ctaggaagtg ggcaagctcc 4861 agaaacaagt ggtcttccct ctggatttag tggtgagtat tctggggtgg accttggaag 4921 tggcccaccc tctggcctgc ctgactttag tggacttcca tctggattcc caactgtttc 4981 cctagtggat tctacattgg tggaagtggt cacagcctcc actgcaagtg aactggaagg 5041 gaggggaacc attggcatca gtggtgcagg agaaatatct ggactgccct ccagtgagct 5101 ggacattagt gggagagcta gtggactccc ttcaggaact gaactcagtg gccaagcatc 5161 tgggtctcct gatgtcagtg gggaaatacc tggactcttt ggtgtcagtg gacagccatc 5221 agggtttcct gacactagtg gggaaacatc tggagtgact gagcttagcg ggctgtcctc 5281 tggacaacca ggtgttagtg gagaagcatc tggagttctt tatggcacta gtcaaccctt 5341 tggcataact gatctgagtg gagaaacatc tggggtccct gatctcagtg ggcagccttc 5401 agggttacca gggttcagtg gggcaacatc aggagtccct gacctggttt ctggtaccac 5461 gagtggcagc ggtgaatctt ctgggattac atttgtggac accagtttgg ttgaagtggc 5521 ccctactaca tttaaagaag aagaaggctt agggtctgtg gaactcagtg gcctcccttc 5581 cggagaggca gatctgtcag gcaaatctgg gatggtggat gtcagtggac agttttctgg 5641 aacagtcgat tccagtgggt ttacatccca gactccggaa ttcagtggcc taccaagtgg 5701 catagctgag gtcagtggag aatcctccag agctgagatt gggagcagcc tgccctcggg 5761 agcatattat ggcagtggaa ctccatctag tttccccacg gtctctcttg tagacagaac 5821 tttggtggaa tctgtaaccc aggctccaac agcccaagag gcaggagaag ggccttctgg 5881 cattttagaa ctcagtggtg ctcattctgg agcaccagac atgtctgggg agcattctgg 5941 atttctggac ctaagtgggc tgcagtccgg gctgatagag cccagcggag agccaccagg 6001 tactccatat tttagtgggg attttgccag caccaccaat gtaagtggag aatcctctgt 6061 agccatgggc accagtggag aggcctcagg acttccagaa gttactttaa tcacttctga 6121 gttcgtggag ggtgttactg aaccaactat ttctcaggaa ctaggccaaa ggccccctgt 6181 gacacacaca ccccagcttt ttgagtccag tggaaaagtc tccacagctg gggacgttag 6241 tggagctacc ccagtgctcc ctgggtctgg agtagaagta tcatcagtcc cagaatctag 6301 cagtgagacg tccgcctatc ctgaagctgg gttcggggca tctgccgccc ctgaggccag 6361 cagagaagat tctgggtccc ctgatctgag tgaaaccacc tctgcattcc acgaagctaa 6421 cctcgagaga tcctctggcc taggagtgag cggcagcact ttgacatttc aagaaggcga 6481 ggcgtccgct gccccagaag tgagtggaga atccaccacc accagtgatg tggggacaga 6541 ggcaccaggc ttgccttcag ccactcccac ggcttctgga gacaggactg aaatcagcgg 6601 agacctgtct ggtcacacct cgcagctggg cgttgtcatc agcaccagca tcccagagtc 6661 tgagtggacc cagcagaccc agcgccctgc agagacgcat ctagaaattg agtcctcaag 6721 cctcctgtac tcaggagaag agactcacac agtcgaaaca gccacctccc caacagatgc 6781 gtccatccca gcttctccgg aatggaaacg tgaatcagaa tcaactgctg cagaccagga 6841 ggtatgtgag gagggctgga acaagtacca gggccactgt taccgccact tcccggaccg 6901 cgagacctgg gtggatgctg agcgccggtg tcgggagcag cagtcacacc tgagcagcat 6961 cgtcaccccc gaggagcagg agtttgtcaa caacaatgcc caagagtacc agtggatcgg 7021 cctgaacgac aggaccatcg aaggggactt ccgctggtca gatggacacc ccatgcaatt 7081 tgagaactgg cgccccaacc agcctgacaa cttttttgcc gctggagagg actgtgtggt 7141 gatgatctgg cacgagaagg gcgagtggaa tgatgttccc tgcaattacc acctcccctt 7201 cacgtgtaaa aagggcacag tggcctgcgg agagccccct gtggtggagc atgccaggac 7261 cttcgggcag aagaaggacc ggtatgagat caattccctg gtgcggtacc agtgcacaga 7321 ggggtttgtc cagcgccaca tgcccaccat ccggtgccag cccagcgggc actgggagga 7381 gcctcagatc acctgcacag accccaccac ctacaaacgc agactacaga agcggagctc 7441 acggcaccct cggaggagcc gccccagcac agcccactga gaagagcttc caggacgcac 7501 ccaggacgct gagcccagga gcctgccagg ctgacgtgca tcccacccag acggtgtcct 7561 cttcttgtcg c //