LOCUS BC150617 4193 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens retrotransposon-like 1, mRNA (cDNA clone MGC:183527
IMAGE:9056987), complete cds.
ACCESSION BC150617
VERSION BC150617.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4193)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4193)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 684 Row: l Column: 9
single stranded.
FEATURES Location/Qualifiers
source 1..4193
/db_xref="H-InvDB:HIT000503313"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:183527 IMAGE:9056987"
/tissue_type="Testicle, PCR rescued clones"
/clone_lib="NIH_MGC_382"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: GATTGGAT"
gene 1..4193
/gene="RTL1"
/gene_synonym="Mar1"
/gene_synonym="MART1"
/gene_synonym="PEG11"
/db_xref="GeneID:388015"
/db_xref="HGNC:HGNC:14665"
/db_xref="MIM:611896"
CDS 60..4136
/gene="RTL1"
/gene_synonym="Mar1"
/gene_synonym="MART1"
/gene_synonym="PEG11"
/codon_start=1
/product="RTL1 protein"
/protein_id="AAI50618.1"
/db_xref="GeneID:388015"
/db_xref="HGNC:HGNC:14665"
/db_xref="MIM:611896"
/translation="MIEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGE
AGPASGPAQEKKEPPSGPLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEES
CNGSHQARGDPLSGASDRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHST
AELMAMVRSIISLYFRMQDLKEQQRVAEEILIKGINAGQLPAPKHFSGDRREFHEFIV
LCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQENSPLIGDFPAFLEAMSE
VFEYRQALRVAEEAMFTIRQGGRSATEYIDEFQSLVPILGWPDEVLQAHLCQGLNEEI
RHYLFRVPQPDSLDSLIVLILQIEEKLAERRAMLRLPPEARPRNLTWIDSPAPERWMV
SSWLPSEVHPDINRAHLFLLLMVRVNPYHSVAVQALVDSGADGNFMDEKFAQEHYVEL
YEKPYPQPVQSVDGSLIGNEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGIRW
LRVHAPEVDWIKGRCTFHSPYCLKNCFRPPPPCIALERHGMSLLPGLPHPYSDLADVF
NPKEADDETSDQPSSDGSDDLSESEPSELQQAGDSDHSETFYECPSTAPWEPVGARMQ
ERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGAEWFTKLELRGTIVEESVNGHRT
EDVWKAAFGLELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSM
SQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIIT
GYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVQEQEAFECL
KRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIE
VEYSQAEMKILPIRAAFMVWCRYLENTEEPIMILLNTEDLASLNNDRLTVLLPGHWVF
FFSHFNFDVMELPEQDGGRALPPVRNLRWRRAFQRNTAARQTLLLASRGFPRDPSTES
GEEENEEQDELNEQILRQELLAMIPIDQILNSFLAHFSMAQIRAVILHFFRGLLYWKN
TLALAAILVLLRVRQCLSLRPAPAMRVARPQPQRSLRLILDSSLIAGSSITTAITQLL
TQMPALVGANTIPAQELAELFLGPGRWQRNALHSQAHRGLQFTPGFWLTLCEFFGVRV
TPQEGHLPALRQNRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDKQDN
DVQEAPPSHTAATHPPRPRHLMDPQVLEFLGSRLLHIHSADGQLHLLSREQAARALSQ
FLTLIYRRALPIPAWESQPREQARLEELPDEDEDVNLD"
BASE COUNT 990 a 1346 c 1088 g 769 t
ORIGIN
1 gactggacgc catcacaacc ttaccaatct tcagaataca ctcctttcca tccgacgaaa
61 tgatagaacc ctctgaagac tcatttgaga cgatgatgga gcataagaat ccatcatcaa
121 aacaaatgga gtcctccgag ggctcatcca acaccaccga ggcgacgtcg ggcagtggag
181 tgcggggaga ggcagggcca gccagcggcc cagcccagga aaagaaggag ccccccagtg
241 gcccactcca ggaaatggaa gagctgccca ctgatctact ccaagacatg gaggagccat
301 ccagtggccc acgtaaggaa atagaggatc cacccaatga cctactccaa gacctggagg
361 agtcatgcaa cggttcacac caggcaaggg gggatccact cagtggagca tctgatagga
421 tgaaagaagc atcagtcaac ccatcgggag cccgagaaga acaagaggct cacactgacc
481 tgaaggaatc gggaagggag gagactcctc aagagcaaaa ccagaccgag cactcaaccg
541 cagaacttat ggccatggtg aggtccatca tctcgctgta cttccgaatg caagacctca
601 aagagcaaca gagagtagca gaagagatct tgatcaaagg gatcaatgca ggccaactgc
661 ccgccccaaa gcacttctct ggcgatcgca gagaattcca cgagttcatc gtactctgcc
721 aactgacctt acagagctac ccaagaatgt tctataacga ccgtctgaga gttggctatg
781 tcatcaatca cctgtccggc ttggcattag aatgggccaa agctctactg caggaaaaca
841 gccccctgat cggagacttc ccagccttcc tggaggccat gtccgaggtg tttgagtacc
901 gccaggcact gcgtgtggca gaagaggcca tgttcaccat caggcagggc ggccgctctg
961 ccactgagta catcgatgag ttccagagcc tggtacccat cttgggctgg ccagatgaag
1021 tcctgcaggc ccacttgtgc caggggctca acgaggagat caggcactat ctattccggg
1081 tccctcagcc ggattcccta gacagtctga ttgtgctcat cctgcaaata gaagagaagc
1141 tggcagagag aagagctatg ctcaggctgc cccccgaggc ccgcccccgg aacctgacct
1201 ggatcgactc acctgctcca gagaggtgga tggtcagcag ctggttgccc agcgaagtcc
1261 atccggacat caatcgcgcc cacctcttcc tgctgctcat ggtgagagtg aacccctacc
1321 acagcgtcgc ggtccaggcc ctggtggatt cgggagctga cggcaacttc atggatgaga
1381 agttcgccca agagcactac gtcgagctct acgagaagcc gtacccacag ccggtccaat
1441 ccgtggacgg ctcgctgatt ggcaacgagc ctgtctggct ctacacggag cccctggtgt
1501 gtatccacca gaaccaccag gagtccatcg aatttgacat cgtaccttca ccgaacttct
1561 ctgtggtcct aggcatccgc tggctccgag tccacgcccc cgaagtcgac tggatcaaag
1621 gccgctgcac cttccactct ccctactgcc tgaagaactg cttccgcccg cccccgccat
1681 gcattgccct agagaggcac ggcatgagcc tgctacccgg actgccacac ccatactcag
1741 acctggccga cgtgtttaac ccgaaggaag cagatgatga gacttccgac cagccaagct
1801 cagacggatc cgatgatctt tctgaatcag agccctctga gcttcagcag gctggagaca
1861 gtgatcacag cgagaccttt tacgagtgtc cctccaccgc gccttgggaa cctgtgggtg
1921 ccaggatgca agaaagagcc aggctacagg aggaatactg ggacctgcag gacatgctga
1981 ccaacagaca ggactacata cagatgattc cggaactgtt tgaccagtta cacggagccg
2041 agtggttcac aaaactggag ctgcgtggga ccattgtgga ggaaagcgtg aacgggcacc
2101 gcaccgaaga tgtgtggaaa gcagcgtttg gtttggagct tgaagagatg aagagctacc
2161 agccgttcgc gctctcccca gaccctatca tacctcagaa cgtgattcac ttcatcctaa
2221 aggacatgct agggttcttt gtgctttctt atggccagga agtcctgatc tactcaatga
2281 gtcaggagga gcacctccac cacgtccgcc aagtcctggt ccgcttccgc catcacaacg
2341 tctactgctc cctggacaag agccagttcc accgccaaac cgtggaattc ctgggcttcg
2401 tcgtcacccc caaaggggtg aaactgaaca agaacgtcat gaccatcata acagggtacc
2461 ctacccctgg ctccaagcta tctctgcgaa acttcatcga attcgtcttc ccctaccgcc
2521 acttcgtgga gcgcttcagc atcatcgcag agcccctggt gcggcagctg ctgagctcct
2581 accagttcta ctggggagtc caggagcaag aggccttcga gtgcctgaag agggctttcc
2641 gcaaggcgcc tctcctccac caccccaagc cccagaaccc attctacttg gaaaccggcg
2701 tcaccggcac ggccctgcac gcctccctga tccaaatcga cgaccaaacc ggcaagagag
2761 cctgctgcgc tttctactcc cgcaacatct cccctatcga ggttgagtac tctcaagcgg
2821 agatgaagat tcttccaata cgggctgcct tcatggtgtg gtgccgctac ctggagaaca
2881 ccgaggagcc catcatgatc cttctcaaca cagaggatct agcctctctg aataatgaca
2941 ggctcaccgt acttctcccc gggcattggg tcttcttctt ctcccacttc aactttgacg
3001 tcatggagct gccagaacaa gacggcggcc gagctctgcc acctgtgaga aacctccggt
3061 ggaggagagc cttccagagg aacactgccg ccaggcaaac cctgctgctg gcctcaaggg
3121 gattccccag ggatccatcg acggaatccg gggaagaaga gaatgaagaa caggatgagc
3181 tcaatgaaca gatcctacgg caagagctgc tggccatgat acccatcgac cagatcctca
3241 acagcttcct cgcccacttc agcatggccc agatcagggc cgtcattctg cacttcttcc
3301 gaggcctcct gtactggaag aacaccctag ccctggcagc catcctcgtg ctactgcgcg
3361 tgaggcaatg cctctcgctg cggccggcac ccgccatgcg ggtagctcgg ccccagcccc
3421 agcgctccct acgactcatc ctggattcgt ccctcatcgc aggcagcagc atcacgacag
3481 ccatcaccca gctgctcacc cagatgcccg ctctcgtagg tgcaaacacc atcccagccc
3541 aggagctggc tgagctgttc ctgggccctg gccgctggca gcgaaatgct ctgcactccc
3601 aggcccaccg aggcctgcag ttcacccctg gcttctggct gacgctgtgt gagttcttcg
3661 gtgtcagagt caccccccag gagggccacc tccctgccct gcgtcagaac cgctacctgg
3721 agctgcacgt cgttggtgat gaggatgtcg tcttgcgaga agccctgcaa gacgacctgc
3781 aacgttaccg tcagtgtggc ctgcatgacg gcctgcaaga cacctcgcag gacaagcagg
3841 acaacgacgt gcaggaggcc ccacccagcc acacagcagc cacccaccca ccccgcccac
3901 gccacctgat ggatccccag gtcctggaat tccttggtag ccgcctgctc cacatccaca
3961 gtgcagatgg ccagctgcac ctgctcagcc gggagcaggc agccagggcc ctgagccagt
4021 tcctgaccct gatctacagg cgggccctgc ccatccccgc ctgggagagc cagcccaggg
4081 agcaggcaag gctagaagag ctgcctgatg aggacgaaga tgttaacctc gactgaagac
4141 gcctccctgt ctccagcaaa gagtcccctc tatttctcac cccaacacct ccc
//