LOCUS BC150596 6328 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens GTPase activating Rap/RanGAP domain-like 1, mRNA (cDNA
clone MGC:183506 IMAGE:9056966), complete cds.
ACCESSION BC150596
VERSION BC150596.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6328)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6328)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 13 Row: G Column: 7
single stranded.
FEATURES Location/Qualifiers
source 1..6328
/db_xref="H-InvDB:HIT000503292"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:183506 IMAGE:9056966"
/tissue_type="Testis, PCR rescued clones"
/clone_lib="NIH_MGC_375"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO; Clone identification sequence
tag: CCAAGCTC"
gene 1..6328
/gene="GARNL1"
/gene_synonym="GRIPE"
/gene_synonym="TULIP1"
/db_xref="GeneID:253959"
/db_xref="HGNC:HGNC:17770"
/db_xref="MIM:608884"
CDS 100..6249
/gene="GARNL1"
/gene_synonym="GRIPE"
/gene_synonym="TULIP1"
/codon_start=1
/product="GARNL1 protein"
/protein_id="AAI50597.1"
/db_xref="GeneID:253959"
/db_xref="HGNC:HGNC:17770"
/db_xref="MIM:608884"
/translation="MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLK
QFFDQHFSHIYYVFFENFVTIEASLKQKGHKSQREELDAILFIFEKILQLLPERIHQR
WQFHSIGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSKEQLWMFSCLIPGFSA
PQSEHGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYI
VIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPILDIPQMRPKP
HYVVIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPK
NIQRAAASLVSREESKNDNADKTDRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLT
DIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQ
EPEEIVITSSDLPCIENVTDHDISMEEGEKREEENGTNTADHVRNSSWAKNGSYQGAL
HNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKNLLDEHTDMCKRILNIYR
YMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQAFLQFQGKKNMTLAGRLAGPLFQTL
IVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDL
SDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGS
PGTEKARSIVRQKTVDIDDAQILPRSTRVRHFSQSEETGNEVFGALNEEQPLPRSSST
SDILEPFTVERAKEAEQNATRGSTEGSVQSCNGLFWKESCSDIGGSSANVPDLMDEFI
AERLRSGNASTMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGS
SDLISSDSHSDSFSAFQYDGRKFDNFGFGTDTGVTSSADVDSGSGHHQSAEEQEVASL
TTLHIDSETSSLNQQAFSAEVATITGSESASPVHSPLGSRSQTPSPSTLNIDHMEQKD
LQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDV
NSIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFK
ATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTI
IKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYC
ELPSLHPNIPDVAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVH
ESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQIL
IATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPFHATGAESDKTEK
SVLNCIYKVLHGCVYGAQCFSNPRYFPMSLSDLASVDYDPFMHLESLKEPEPLHSPDS
ERSSKLQPVTEVKTQMQHGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDN
HYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEENMPGGGLSAGLASANSNVRI
IVRDLSGKYSWDSAILYGPPPVSGLSEPTSFMLSLSHQEKPEEPPTSNECLEDITVKD
GLSLQFKRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCI
SEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPIPQKPQSAFYYCRLLLSI
LGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNT
GGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMP
SDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQI
MKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQT
IVQHHLEPTTFEDFAAQVFSPAPYHHLPSDADH"
BASE COUNT 1952 a 1298 c 1290 g 1788 t
ORIGIN
1 tctggctagt ctcctccccg tccactccct ccactttctg ccgccgggac ccggctggga
61 gccggctgtg gcagtggcag tggcagtggc agcgacagga tgttctccaa gaagccgcac
121 ggggacgtga agaagtccac ccagaaggtg ctagacacca agaaggacgc actgactcgc
181 ctcaagcacc tgcgcatcgt catcgagaat gcagaatcta ttgatcttaa acagtttttc
241 gaccaacatt tttcacatat atactatgtg ttctttgaaa attttgtgac tattgaagct
301 agtcttaaac agaaaggtca caagtctcaa agagaggaat tggatgctat actttttatt
361 tttgagaaaa ttttacaact tcttccagaa agaattcatc agcgatggca gtttcatagt
421 attggattga ttttaaagaa gctacttcac acaggaaact ccttaaagat taggcgggaa
481 ggtgttcgtc ttttcttact atggttgcaa gctcttcaga ataactgtag caaagaacag
541 ctctggatgt tttcatgctt aatccctgga ttttcagcac cacagtctga acatggacct
601 cgaactttag ataatctcat taatcctcca ctcaaccttc aagaaactca agtcactata
661 gaagaaatca ctcctcttgt ccccccacaa tcaggagata aagggcaaga agatctcaca
721 agctattttc ttgaagcact tctaaaatac atagtcattc aggtaaaaag tttagaatgg
781 aagaacaaag aaaaccaaga aaggggattt tcatttttgt tttcacattt taagaaatat
841 tacttgcctt atatttttcc aaacatctgt aaggaaaaca gtttatatca tcctatactt
901 gacatcccgc agatgagacc aaagccacat tatgtcgtga taaagaaaga tgctgaaacc
961 aatgaagcaa tctattgtac aaaggagcct ttcattaagg ctcgtgttat tgtcattcgt
1021 tggctggttt ctttctggct ggagccaaaa ccacatacag gacctcatat tcctgggatg
1081 gaaggtgaag tcttgccaaa gaatattcag agagcagctg ctagtttagt atccagagaa
1141 gaaagcaaaa atgataatgc tgataaaaca gacagaacta cagaacccga acagtctcat
1201 tccaatacaa gcactctcac ggagcgagaa cctagctcat ctagtctctg tagtattgat
1261 gaagaacatc tcacagacat tgaaatagtt cgcagagttt tttcttctaa aaggagtaat
1321 gtaaactttg tgacagagat atttcgtcag gcatttttat taccaatttg tgaagcagca
1381 gctatgagaa aagtggtaaa agtatatcaa gaatggatcc aacaagagga aaaacctttg
1441 ttcatgcaag agcctgaaga aattgtgatc acttcttcag acctcccttg cattgaaaat
1501 gtcacagacc atgatatttc aatggaagaa ggagaaaaaa gagaagagga aaatgggacc
1561 aatactgctg atcatgttcg aaattccagt tgggcaaaaa acggctccta ccaaggtgct
1621 cttcataacg cctctgaaga agccacagaa caaaacatac gagctggtac ccaggcagtt
1681 ttgcaggtgt ttattataaa ctcatcaaat atatttcttc ttgaacctgc aaatgaaata
1741 aaaaatcttc tggatgaaca cacagatatg tgtaaacgca ttcttaacat ttatcggtac
1801 atggttgtac aagtatcaat ggacaaaaag acttgggaac agatgctgct tgtgttgctc
1861 agagtcacgg aatctgtact gaagatgcca tcacaagctt ttctacagtt ccaagggaaa
1921 aaaaatatga ccttggcagg tcgacttgca ggaccacttt tccagaccct tatagttgcc
1981 tggatcaaag caaacctaaa tgtgtacatc tcccgagaac tttgggatga cttactgtca
2041 gtattgtcat cgctgaccta ttgggaagag ttggccactg agtggtcact gactatggag
2101 acattaacta aagttttagc taggaattta tatagtttgg atctcagtga tttaccattg
2161 gataagctga gtgaacagaa acaaaaaaag cacaaaggga aaggagttgg acatgaattt
2221 cagaaagttt cagttgacaa gtcattttct agaggatgga gtcgtgatca gcctggccaa
2281 gccccaatga gacagaggag tgcaacaacc actggttctc caggaaccga aaaggcgagg
2341 agtatagtac ggcaaaaaac tgtcgatatt gatgatgctc aaatacttcc ccgctcaact
2401 agagtcagac atttttcaca aagtgaagaa actggaaatg aagtttttgg tgctttgaat
2461 gaggagcagc cattgcctcg aagtagcagc acttctgaca tcttggaacc attcactgtt
2521 gaacgagcca aagaggcaga acagaatgcc accagaggct ccactgaggg atctgtacag
2581 tcatgtaatg ggctattttg gaaggaaagc tgcagtgata ttggcggcag cagtgctaat
2641 gttcctgatc tgatggatga gtttatagca gaacgacttc gaagtggtaa tgcctcgact
2701 atgacaagaa gaggaagtag tccaggcagc ctggaaattc ccaaagacct ccctgatatt
2761 ctaaacaagc agaaccagat gcgccctatt gatgacccag gtgtgccctc agaatggact
2821 tctcctgcca gtgcagggag cagtgatctt atcagctcag atagtcattc ggattctttc
2881 agcgctttcc aatatgatgg ccgaaaattt gacaattttg gctttggaac cgacactggg
2941 gttacgtcct ctgctgatgt ggattcaggt tctggccatc atcagagtgc tgaagagcag
3001 gaagtggcta gtctaactac tcttcatata gattctgaaa caagcagtct taatcagcaa
3061 gctttctctg ctgaagttgc aactattact ggttcagaaa gtgcttcccc agtccactca
3121 cctctgggct ccaggtcaca gactccttcc ccttctacat tgaatataga tcacatggaa
3181 cagaaggatc tgcagctcga cgagaagctc caccactctg ttcttcagac accagatgat
3241 ctagaaatta gtgaatttcc atcagaatgt tgtagtgtga tggcaggagg tactctgact
3301 ggatggcatg ctgatgttgc tactgtaatg tggcgaagaa tgctaggcat tttgggagat
3361 gtaaattcaa tcatggatcc tgaaatacat gctcaagttt ttgattacct ctgtgaactt
3421 tggcagaatc tagctaagat tagagataac cttggcattt caactgataa cctgacctcc
3481 ccttctccac cagttttaat tcctccactg agaattctta caccttggct ttttaaggca
3541 accatgttga ctgataaata taaacaaggt aaattacatg catataaact tatttgtaat
3601 acaatgaaaa gaagacaaga tgtttctcca aatagagatt ttctaacaca tttctacaat
3661 ataatgcatt gtggattact tcatattgac caggatattg tcaatacaat catcaaacac
3721 tgctcacctc aatttttttc acttggtttg cctggtgcca caatgcttat tatggatttt
3781 attgtagcag ctggtagagt ggcttcttca gcttttctca atgcaccaag agtagaagca
3841 caagttcttc tgggatcttt ggtttgcttt cccaacttat attgtgaact gccttctctt
3901 catcccaaca ttcctgatgt tgctgtgtct cagtttacag atgttaagga acttataatc
3961 aaaactgtat taagctcggc aagagatgag ccctctggtc ctgcacgatg tgtagcactt
4021 tgtagtttag gtatttggat ttgtgaagaa ctagtccatg agtctcatca tcctcaaatt
4081 aaggaagctc tgaatgtgat ttgtgtttcc ttaaagttta ctaataaaac agtagcccac
4141 gtagcttgta acatgcttca catgctggtt cattatgtac ctagacttca gatttaccag
4201 cctgattctc ccttgaaaat tattcaaatc ctaatagcta ccatcaccca tcttttacca
4261 agtacagagg cttcatctta tgaaatggac aagaggttgg tagtatcttt acttctctgc
4321 cttctggact ggatcatggc cttacctcta aagacactgc tccaaccatt tcatgctacg
4381 ggagcagaaa gcgataaaac agaaaaatct gttctcaatt gcatttataa ggttttacat
4441 gggtgtgttt atggagctca gtgttttagc aatccaaggt attttcccat gagcctctct
4501 gatttggcat ctgtagatta tgatcctttt atgcatttgg aaagtctgaa agagcctgag
4561 cctctgcact ctcctgactc agaacgatct tctaaactcc agccagtaac agaagtgaaa
4621 actcaaatgc agcatggatt aatctctata gcagcccgca ctgttattac acatctggta
4681 aatcacctgg gccattatcc aatgagcggt ggtcctgcta tgctaacaag tcaggtgtgt
4741 gaaaatcacg acaatcatta cagtgaaagt actgaacttt ctcctgaact ctttgagagt
4801 ccaaatatcc agttctttgt gttaaataat acaaccttag tgtcctgtat ccagatcaga
4861 tcagaagaga atatgcctgg aggaggttta tctgctggcc ttgcatcagc caattcaaat
4921 gtcagaatca tagtacgtga tctctctgga aaatattcat gggattctgc tatactgtat
4981 ggcccacctc ctgtaagtgg cttgtcagaa cctacatctt tcatgctttc attgtctcac
5041 caagagaagc cagaagagcc tccgacatct aatgaatgct tagaagatat aaccgtaaaa
5101 gatggacttt ctctccagtt taaaagattt agagaaactg taccaacttg ggatacaata
5161 agagatgaag aagatgttct tgatgagctc ttgcagtatt tgggtgttac tagtcctgaa
5221 tgcttacaga gaactggaat ctcacttaat attcctgctc cacaacctgt gtgcatttct
5281 gaaaaacaag aaaatgatgt tattaatgct atccttaagc aacatacaga agaaaaagaa
5341 tttgttgaga agcactttaa tgacttaaac atgaaagctg tggaacaaga tgaaccaata
5401 cctcaaaaac ctcagtcagc attttattat tgcagattgc ttcttagtat attgggaatg
5461 aattcctggg acaaacggag gagctttcat ctcctgaaga aaaatgaaaa gctacttaga
5521 gaacttagga acttggattc aaggcagtgc cgagagacac acaagattgc agtattttat
5581 gttgctgaag gacaagaaga caaacactcc attctcacca atacaggagg aagtcaagca
5641 tatgaagatt ttgtagctgg tcttggttgg gaggtaaatc ttacaaacca ttgtggtttt
5701 atgggaggac tacaaaaaaa caaaagcact ggattgacca ctccatattt tgctacctct
5761 acagtagagg taatatttca cgtgtcaaca agaatgcctt ctgattctga tgattctttg
5821 accaaaaaat tgagacattt gggaaatgat gaagtgcaca ttgtttggtc agagcatact
5881 agagactaca ggagaggaat tattcccaca gaatttggtg atgtccttat tgtaatatat
5941 ccaatgaaaa atcacatgtt cagtattcag ataatgaaaa aaccagaggt tcccttcttt
6001 ggtccccttt ttgatggtgc tattgtgaat ggaaaggttc tacccattat ggttagagca
6061 acagctataa atgcaagccg tgctctgaaa tctctgattc cattgtatca aaacttctat
6121 gaggagagag cacgatacct gcaaacaatt gtccagcacc acttagaacc aacaacattt
6181 gaagattttg cagcacaggt tttttctcca gctccctacc accatttacc atctgatgcc
6241 gatcattaaa tatcagttct gtttatctga aggctcctac ccagagattc tacccagtga
6301 aactcccaca gcaacgcagg tagatggg
//