LOCUS BC150328 4269 bp mRNA linear HUM 17-JUL-2007
DEFINITION Homo sapiens histone deacetylase 9, mRNA (cDNA clone MGC:167816
IMAGE:8860495), complete cds.
ACCESSION BC150328
VERSION BC150328.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4269)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4269)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Kazusa DNA Research Inst.
cDNA Library Preparation: Kazusa DNA Research Institute
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCF Plate: 14 Row: a Column: 5.
FEATURES Location/Qualifiers
source 1..4269
/db_xref="H-InvDB:HIT000435808"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:167816 IMAGE:8860495"
/tissue_type="Clones donated by Kazusa DNA Research Inst."
/clone_lib="Kazusa-KIAA-pBluescriptIISK+"
/lab_host="DH5alpha T1-resistant"
/note="Vector: pBluescript II SK+"
gene 1..4269
/gene="HDAC9"
/gene_synonym="HD7"
/gene_synonym="HDAC"
/gene_synonym="HDAC7"
/gene_synonym="HDAC7B"
/gene_synonym="HDAC9B"
/gene_synonym="HDAC9FL"
/gene_synonym="HDRP"
/gene_synonym="MITR"
/db_xref="GeneID:9734"
/db_xref="HGNC:HGNC:14065"
/db_xref="MIM:606543"
CDS 162..1934
/gene="HDAC9"
/gene_synonym="HD7"
/gene_synonym="HDAC"
/gene_synonym="HDAC7"
/gene_synonym="HDAC7B"
/gene_synonym="HDAC9B"
/gene_synonym="HDAC9FL"
/gene_synonym="HDRP"
/gene_synonym="MITR"
/codon_start=1
/product="histone deacetylase 9"
/protein_id="AAI50329.1"
/db_xref="GeneID:9734"
/db_xref="HGNC:HGNC:14065"
/db_xref="MIM:606543"
/translation="MHSMISSVDVKSEVPVGLEPISPLDLRTDLRMMMPVVDPVVREK
QLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHIKELLAIKQQQELLEK
EQKLEQQRQEQEVERHRREQQLPPLRGKDRGRERAVASTEVKQKLQEFLLSKSATKDT
PTNGKNHSVSRHPKLWYTAAHHTSLDQSSPPLSGTSPSYKYTLPGAQDAKDDFPLRKT
ASEPNLKVRSRLKQKVAERRSSPLLRRKDGNVVTSFKKRMFEVTESSVSSSSPGSGPS
SPNNGPTGSVTENETSVLPPTPHAEQMVSQQRILIHEDSMNLLSLYTSPSLPNITLGL
PAVPSQLNASNSLKEKQKCETQTLRQGVPLPGQYGGSIPASSSHPHVTLEGKPPNSSH
QALLQHLLLKEQMRQQKLLVAGGVPLHPQSPLATKERISPGIRGTHKLPRHRPLNRTQ
SAPLPQSTLAQLVIQQQHQQFLEKQKQYQQQIHMNKLLSKSIEQLKQPGSHLEEAEEE
LQGDQAMQEDRAPSSGNSTRSDSSACVDDTLGQVGAVKVKEEPVDSDEDAQIQEMESG
EQAAFMQQVIGKDLAPGFVIKVII"
BASE COUNT 1361 a 822 c 853 g 1233 t
ORIGIN
1 ccacgcgtcc gggggaagag aggcacagac acagatagga gaagggcacc ggctggagcc
61 acttgcagga ctgagggttt ttgcaacaaa accctagcag cctgaagaac tctaagccag
121 atggggtggc tggacgagag cagctcttgg ctcagcaaag aatgcacagt atgatcagct
181 cagtggatgt gaagtcagaa gttcctgtgg gcctggagcc catctcacct ttagacctaa
241 ggacagacct caggatgatg atgcccgtgg tggaccctgt tgtccgtgag aagcaattgc
301 agcaggaatt acttcttatc cagcagcagc aacaaatcca gaagcagctt ctgatagcag
361 agtttcagaa acagcatgag aacttgacac ggcagcacca ggctcagctt caggagcata
421 tcaaggaact tctagccata aaacagcaac aagaactcct agaaaaggag cagaaactgg
481 agcagcagag gcaagaacag gaagtagaga ggcatcgcag agaacagcag cttcctcctc
541 tcagaggcaa agatagagga cgagaaaggg cagtggcaag tacagaagta aagcagaagc
601 ttcaagagtt cctactgagt aaatcagcaa cgaaagacac tccaactaat ggaaaaaatc
661 attccgtgag ccgccatccc aagctctggt acacggctgc ccaccacaca tcattggatc
721 aaagctctcc accccttagt ggaacatctc catcctacaa gtacacatta ccaggagcac
781 aagatgcaaa ggatgatttc ccccttcgaa aaactgcctc tgagcccaac ttgaaggtgc
841 ggtccaggtt aaaacagaaa gtggcagaga ggagaagcag ccccttactc aggcggaagg
901 atggaaatgt tgtcacttca ttcaagaagc gaatgtttga ggtgacagaa tcctcagtca
961 gtagcagttc tccaggctct ggtcccagtt caccaaacaa tgggccaact ggaagtgtta
1021 ctgaaaatga gacttcggtt ttgcccccta cccctcatgc cgagcaaatg gtttcacagc
1081 aacgcattct aattcatgaa gattccatga acctgctaag tctttatacc tctccttctt
1141 tgcccaacat taccttgggg cttcccgcag tgccatccca gctcaatgct tcgaattcac
1201 tcaaagaaaa gcagaagtgt gagacgcaga cgcttaggca aggtgttcct ctgcctgggc
1261 agtatggagg cagcatcccg gcatcttcca gccaccctca tgttacttta gagggaaagc
1321 cacccaacag cagccaccag gctctcctgc agcatttatt attgaaagaa caaatgcgac
1381 agcaaaagct tcttgtagct ggtggagttc ccttacatcc tcagtctccc ttggcaacaa
1441 aagagagaat ttcacctggc attagaggta cccacaaatt gccccgtcac agacccctga
1501 accgaaccca gtctgcacct ttgcctcaga gcacgttggc tcagctggtc attcaacagc
1561 aacaccagca attcttggag aagcagaagc aataccagca gcagatccac atgaacaaac
1621 tgctttcgaa atctattgaa caactgaagc aaccaggcag tcaccttgag gaagcagagg
1681 aagagcttca gggggaccag gcgatgcagg aagacagagc gccctctagt ggcaacagca
1741 ctaggagcga cagcagtgct tgtgtggatg acacactggg acaagttggg gctgtgaagg
1801 tcaaggagga accagtggac agtgatgaag atgctcagat ccaggaaatg gaatctgggg
1861 agcaggctgc ttttatgcaa caggtaatag gcaaagattt agctccagga tttgtaatta
1921 aagtcattat ctgaacatga aatgcattgc aggtttggta aatggatatg atttcctatc
1981 agtttatatt tctctatgat ttgagttcag tgtttaagga ttctacctaa tgcagatata
2041 tgtatatatc tatatagagg tctttctata tactgatctc tatatagata tcaatgtttc
2101 attgaaaatc cactggtaag gaaatacctg ttatactaaa attatgatac ataatatctg
2161 agcagttaat aggctttaaa tttatcccaa agcctgctac accaattact tctaaagaaa
2221 acaaattcac tgttattttg agtttatgtg ttgagatcag tgactgctgg atagtctccc
2281 agtctgatca atgaagcatt cgattagttt ttgatttttt gcaacatcta gaatttaatt
2341 ttcacatcac tgtacataat gtatcatact atagtcttga acactgttaa aggtagtctg
2401 ccccttcctt cctctctctt tttttagtta agtagaaatg ttctggtcac catgccagta
2461 gtcctaggtt attgtgtagg ttgcaattga acatattagg aatacaggtg gttttaaata
2521 tatagatgca aattgcagca ctactttaaa tattagatta tgtctcacat agcactgctc
2581 attttacttt tattttgtgt aatttgatga cactgtctat caaaaaagag caaatgaagc
2641 agatgcaaat gttagtgaga agtaatgtgc agcattatgg tccaatcaga tacaatattg
2701 tgtctacaat tgcaaaaaac acagtaacag gatgaatatt atctgatatc aagtcaaaat
2761 cagtttgaaa agaaggtgta tcatatttta tattgtcact agaatctctt aagtataatt
2821 ccataatgac atgggcatat accgtaacat tctggcaaat aacaattaga aaagataggt
2881 ttaacaaaaa aatttacttg tatataatgc accttcagga ggactatgtc ctttgatgct
2941 ataaaataca aacaactttg aaggcaacag aagacactgt ttattcaagt cagttctttg
3001 tcaggttcct gctgttctcc tacagaaaag tgattctgtg agggtgaaca ggaaatgcct
3061 tgtggaaaca ggaagtccaa gtgattcatg tactgaggaa tgtaggaaaa aaaatctgag
3121 gatagtgctt tactctttct gtttttaaag ggcactctat gaattgattt attgtctaag
3181 aaaataacac cacaagtagg gaaattgtta cggaagcttt tcactggaac atttccttca
3241 tattcccttt tgatatgttt accttgtttt ataggtttac ttttgttaag ctagttaaag
3301 gttcgttgta ttaagacccc tttaatatgg ataatccaaa ttgacctaga atctttgtga
3361 ggttttttct attaaaatat ttatatttct aaatccgagg tatttcaagg tgtagtatcc
3421 tatttcaaag gagatatagc agttttgcca aatgtagaca ttgttcaact gtatgttatt
3481 ggcacgtgtt gtttacattt tgctgtgaca tttaaaaata tttctttaaa aatgttactg
3541 ctaaagatac attatccttt tttaaaaagt ctccattcaa attaaattaa cataactaga
3601 agttagaaag tttaaaagtt ttccacataa tgaaagtcct tctgataatt tgacaaatag
3661 ctataatagg aacactccct atcaccaaca tattttggtt agtatattcc ttcatattaa
3721 aatgactttt tgtcagttgt tttgcattaa aaatatggca tgcctaagat aaaattgtat
3781 attttttcca tctcataaat attcattttc ttcaaagtct tttttcaatc tcataaaaaa
3841 gggatagtgc atcttttaaa atacatttta tttggggagg aacatgtggc tgagcagact
3901 tttgtataat attacttcaa agatatgtaa tcacaaacaa aaaaaactat tttttataat
3961 gtcatttgag agagtttcat cagtacagtt ggtggacgtt aattgtttga atttgatagt
4021 ctttgaattt aatcaagaaa ctacctggaa ccagtgaaaa ggaaagctgg acttaaataa
4081 tcttagaatt aattgataaa tgtctctttt aaaatctact gtatttatta taatttacac
4141 ccttgaaggt gatctcttgt tttgtgttgt aaatatattg tttgtatgtt tcccttcttg
4201 ccttctgtta taagtctctt cctttctcaa ataaagtttt ttttaaaaga aaaaaaaaaa
4261 aaaaaaaaa
//