LOCUS       BC150253                5955 bp    mRNA    linear   HUM 17-JUL-2007
DEFINITION  Homo sapiens sema domain, transmembrane domain (TM), and
            cytoplasmic domain, (semaphorin) 6D, mRNA (cDNA clone MGC:166809
            IMAGE:9007179), complete cds.
ACCESSION   BC150253
VERSION     BC150253.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 5955)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 5955)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2007) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Kazusa DNA Research Inst.
            cDNA Library Preparation: Kazusa DNA Research Institute
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRCF Plate: 9 Row: a Column: 6.
FEATURES             Location/Qualifiers
     source          1..5955
                     /db_xref="H-InvDB:HIT000435749"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:166809 IMAGE:9007179"
                     /tissue_type="Clones donated by Kazusa DNA Research Inst."
                     /clone_lib="Kazusa-KIAA-pBluescriptIISK+"
                     /lab_host="DH5alpha T1-resistant"
                     /note="Vector: pBluescript II SK+"
     gene            1..5955
                     /gene="SEMA6D"
                     /db_xref="GeneID:80031"
                     /db_xref="HGNC:HGNC:16770"
                     /db_xref="MIM:609295"
     CDS             452..3487
                     /gene="SEMA6D"
                     /codon_start=1
                     /product="SEMA6D protein"
                     /protein_id="AAI50254.1"
                     /db_xref="GeneID:80031"
                     /db_xref="HGNC:HGNC:16770"
                     /db_xref="MIM:609295"
                     /translation="MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVF
                     RGRPSGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQ
                     QDRENCAMKGKHKDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEI
                     SGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWI
                     KEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTS
                     FLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMD
                     DIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSF
                     IKSHPLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLK
                     VLAKTSPFSLNDSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCII
                     RIPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLLLTEDFFAFHNHSAEGY
                     EQDTEFGNTAHLGDCHGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCY
                     RDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLTS
                     RKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSEKAHGHGASR
                     KETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQNIDHPL
                     TKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEV
                     PPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSISA
                     MPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSN
                     GTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY"
BASE COUNT         1742 a         1338 c         1239 g         1636 t
ORIGIN      
        1 accaggacta ggaggcagcg gggagcgtgc ctgcgtcgct cggagcggtg acagcaagga
       61 gcgcagcgcg gaggccgggc ggcaagggga gtttccagtc ctcgataagt ggagtccctg
      121 ctctgcgctg cgccagcgcc ttccgcctgg gcccgcggtg ctagacacct gccgagtccg
      181 aagcgggagt caggctgagc cttcggcccc caagatctcc aacctgagca tatgccagtt
      241 gacatgggaa cactgaggcc agcaatttaa ggatttcaca tttgcttgca gtgaatgcgt
      301 aatcctggat ctcttgttcg caaatcgaca gcctgaagcc ctctggaagc ccaagactgc
      361 tggaggtttt tgaccagaca agccaacctt tttcaaggta gctcagtggc atttctgagc
      421 aggggccacc ctgacttcac cttggcccac catgagggtc ttcctgcttt gtgcctacat
      481 actgctgctg atggtttccc agttgagggc agtcagcttt cctgaagatg atgaacccct
      541 taatactgtc gactatcact attcaaggca atatccggtt tttagaggac gcccttcagg
      601 caatgaatcg cagcacaggc tggactttca gctgatgttg aaaattcgag acacacttta
      661 tattgctggc agggatcaag tttatacagt aaacttaaat gaaatgccca aaacagaagt
      721 aatacccaac aagaaactga catggcgatc aagacaacag gatcgagaaa actgtgctat
      781 gaaaggcaag cataaagatg aatgccacaa ctttatcaaa gtatttgttc caagaaacga
      841 tgagatggtt tttgtttgtg gtaccaatgc attcaatccc atgtgtagat actacaggtt
      901 gagtacctta gaatatgatg gggaagaaat tagtggcctg gcaagatgcc catttgatgc
      961 cagacaaacc aatgttgccc tctttgctga tgggaagctg tattctgcca cagtggctga
     1021 cttcttggcc agcgatgccg ttatttatcg aagcatgggt gatggatctg cccttcgcac
     1081 aataaaatat gattccaaat ggataaaaga gccacacttt cttcatgcca tagaatatgg
     1141 aaactatgtc tatttcttct ttcgagaaat cgctgtcgaa cataataatt taggcaaggc
     1201 tgtgtattcc cgcgtggccc gcatatgtaa aaacgacatg ggtggttccc agcgggtcct
     1261 ggagaaacac tggacttcat ttctaaaggc tcggctgaac tgttctgtcc ctggagattc
     1321 gtttttctac tttgatgttc tgcagtctat tacagacata atacaaatca atggcatccc
     1381 cactgtggtc ggggtgttta ccacgcagct caatagcatc cctggttctg ctgtctgtgc
     1441 atttagcatg gatgacattg aaaaagtatt caaaggacgg tttaaggaac agaaaactcc
     1501 agattctgtt tggacagcag ttcccgaaga caaagtgcca aagccaaggc ctggctgttg
     1561 tgcaaaacac ggccttgccg aagcttataa aacctccatc gatttcccgg atgaaactct
     1621 gtcattcatc aaatctcatc ccctgatgga ctctgccgtt ccacccattg ccgatgagcc
     1681 ctggttcaca aagactcggg tcaggtacag actgacggcc atctcagtgg accattcagc
     1741 cggaccctac cagaactaca cagtcatctt tgttggctct gaagctggca tggtacttaa
     1801 agttctggca aagaccagtc ctttctcttt gaacgacagc gtattactgg aagagattga
     1861 agcctacaac catgcaaagt gcagtgctga gaatgaggaa gacaaaaagg tcatctcatt
     1921 acagttggat aaagatcacc acgctttata tgtggcgttc tctagctgca ttatccgcat
     1981 ccccctcagt cgctgtgagc gttatggatc atgtaaaaag tcttgtattg catctcgtga
     2041 cccgtattgt ggctggttaa gccagggatc ctgtggtaga gtgaccccag ggatgctgct
     2101 gttaaccgaa gacttctttg ctttccataa ccacagtgct gaaggatatg aacaagacac
     2161 agaattcggc aacacagctc atctagggga ctgccatggt gtacgatggg aagtccagtc
     2221 tggagagtcc aaccagatgg tccacatgaa tgtcctcatc acctgtgtct ttgctgcttt
     2281 tgttttgggg gcattcattg caggtgtggc agtatactgc tatcgagaca tgtttgttcg
     2341 gaaaaacaga aagatccata aagatgcaga gtccgcccag tcatgcacag actccagtgg
     2401 aagttttgcc aaactgaatg gtctctttga cagccctgtc aaggaatacc aacagaatat
     2461 tgattctcct aaactgtata gtaacctgct aaccagtcgg aaagagctac cacccaatgg
     2521 agatactaaa tccatggtaa tggaccatcg agggcaacct ccagagttgg ctgctcttcc
     2581 tactcctgag tctacacccg tgcttcacca gaagaccctg caggccatga agagccactc
     2641 agaaaaggcc catggccatg gagcttcaag gaaagaaacc cctcagtttt ttccgtctag
     2701 tccgccacct cattccccat taagtcatgg gcatatcccc agtgccattg ttcttccaaa
     2761 tgctacccat gactacaaca cgtctttctc aaactccaat gctcacaaag ctgaaaagaa
     2821 gcttcaaaac attgatcacc ctctcacaaa gtcatccagt aagagagatc accggcgttc
     2881 tgttgattcc agaaataccc tcaatgatct cctgaagcat ctgaatgacc caaatagtaa
     2941 ccccaaagcc atcatgggag acatccagat ggcacaccag aacttaatgc tggatcccat
     3001 gggatcgatg tctgaggtcc cacctaaagt ccctaaccgg gaggcatcgc tatactcccc
     3061 tccttcaact ctccccagaa atagcccaac caagcgagtg gatgtcccca ccactcctgg
     3121 agtcccaatg acttctctgg aaagacaaag aggttatcac aaaaattcct cccagaggca
     3181 ctctatatct gctatgccta aaaacttaaa ctcaccaaat ggtgttttgt tatccagaca
     3241 gcctagtatg aaccgtggag gatatatgcc cacccccact ggggcgaagg tggactatat
     3301 tcagggaaca ccagtgagtg ttcatctgca gccttccctc tccagacaga gcagctacac
     3361 cagtaatggc actcttccta ggacgggact aaagaggacg ccgtccttaa aacctgacgt
     3421 gccaccaaag ccttcctttg ttcctcaaac cccatctgtc agaccactga acaaatacac
     3481 atactaggcc tcaagtgtgc tattcccatg tggctttatc ctgtccgtgt tgttgagagg
     3541 atgatgttgt aagggtacct taaaacaaga gactcgcttg tattttaaga gaaccaagtg
     3601 gccaaagaaa ctctttctaa ctttggcaac atcagaactt gccacatgta gctactgcag
     3661 caaggcttct gtgtacttgc ctgaaaacaa aggaaggtgc tggtcattcc atttcttttg
     3721 tttgaagcta aagagatgtg tagctcacag gggctacctt accagtataa agagctgata
     3781 acagtactca gaagaatctg tgaacaaata cttgaaaatg ggttcaatgt agactgccat
     3841 tatgtgtggt cttcccatta aatgtgaaca ttttaatatg tatgcattca ccttgcctct
     3901 tgcacaaatg tcaaaaaaaa gatggtaata tctcaaagaa atgaacttgt agattaccaa
     3961 gcagtttgct aaaaattcaa tctttgaccc aagctgtagc attttttttt catgtgtggc
     4021 atctttttca tgccaccaac aaacttgttg tgtgtgtgcg tgtgtgtgtg tgtgtgtgtg
     4081 tgtgtgtgtg tgtgttctgt acccactagg atttgtttag gtgcccattg catctttttg
     4141 tgctatggag ttgtttacat taagcatgac cgaacgagag acaatactat ttcccacagg
     4201 agtccattgg gttcagcttt gaaagaggaa tagaatcgag gctcctttga ccatcaaaat
     4261 gatgaacttt acttatgtgg tacccaatgc cagaatgtaa gagttgcaag tgattttgtg
     4321 ctgctattca ttaaaacttg tattccagtc ttgccagctt aaggagatca agatattaag
     4381 aggtatcctt gatttatttt ccagtattca gtagtaaaat tttcctgtcc actgtgaatc
     4441 aaagcctgag tcactctatt taaccttgga cacactaata aggttttatt ttgattgtgt
     4501 tcgtttcccc ccccccaata gtaaaatttc tcctccttta actcctccta ccccccaagg
     4561 taagaaacaa aaaacaaaca aacaaacaaa aatagaagac aaaagaaaga catatgaaag
     4621 gaattgtaat tggcttaaca gaaacagtct gtaaaaacct aacagtggtg caatcatgtt
     4681 gtctgtgttg tgttatgtga gaattttctc ctaagtcatg caggtaatga caatatactg
     4741 taaataccac atgtgagttt acctgaatct gtgcattttg tgccttattc atgagaatga
     4801 tagaagtact aaaatctgtc aagtgttttc agtatagcac attatttact gagtgccagt
     4861 tgtaaatgtt tttcaaccag cacctaaaaa gactcttttc aaaaaatcac agaaacaacc
     4921 taggacaatt atttgttaca taatccgacc tcatagcagc attacattct ttgccgtgat
     4981 aaacattcca ctcctgcttt cctaaggatg aaacagtgat aatgtgaact caaatgaggt
     5041 ttcctgggta atgtgacacc tgcagaaact atagagcgtc atttatacgt agtttggcag
     5101 aaaccactta cggctgatga tgcgcaaccc tgctgactgt ttcagttaat atgctgcaca
     5161 ccacacactt gtttagtgaa ccaaatctag aaagtaccaa ggcagaggta tgctcctgct
     5221 gtaatcaggc aaatgagttc aactggattt cttttgacaa tactgttggt acctattact
     5281 tgggggagga catgttgcag aagaccagat catttttata cagaatgtga aatactgata
     5341 cagttattct tttttttaaa gaacattgtt ttataaagaa cgtgatttcc agtgatctct
     5401 ggaagcgcta aagctaaaat ttctgttctt gaaacacttc agctttgcaa ctaaaatatt
     5461 acagattaat aataaattaa accaaccaat gataaacact actcagtcca ccaacaacaa
     5521 acgtgtttga attcacctta ccaatattaa tcccagcgtg tgtaaaacag aacagtaact
     5581 ctatgtgacc ccagataaca ttttgtaaca ttgtgcttcc ttgtagtttg taatgtgagt
     5641 tcaatcagta tttatgttga aatttctaac attaaatcta gtctctatcc tgttaattta
     5701 atttttaaat gctttatcca tttgtgcaaa ggtaaacgca gattgtatct tttttaatgg
     5761 tacggcataa aaagtaaccc tcaagtgaag tgtctctata ctgttttata gagtacttta
     5821 acatgaatag ataccttgta aacttgtatt gtggatgtgt aaataatatg tactttgggt
     5881 ttttaacacc gcatgtaaag tcaaaataaa atatacaaat cattaaaaaa aaaaaaaaaa
     5941 aaaaaaaaaa aaaaa
//