LOCUS BC150253 5955 bp mRNA linear HUM 17-JUL-2007 DEFINITION Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, mRNA (cDNA clone MGC:166809 IMAGE:9007179), complete cds. ACCESSION BC150253 VERSION BC150253.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5955) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5955) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-JUL-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Kazusa DNA Research Inst. cDNA Library Preparation: Kazusa DNA Research Institute cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCF Plate: 9 Row: a Column: 6. FEATURES Location/Qualifiers source 1..5955 /db_xref="H-InvDB:HIT000435749" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:166809 IMAGE:9007179" /tissue_type="Clones donated by Kazusa DNA Research Inst." /clone_lib="Kazusa-KIAA-pBluescriptIISK+" /lab_host="DH5alpha T1-resistant" /note="Vector: pBluescript II SK+" gene 1..5955 /gene="SEMA6D" /db_xref="GeneID:80031" /db_xref="HGNC:HGNC:16770" /db_xref="MIM:609295" CDS 452..3487 /gene="SEMA6D" /codon_start=1 /product="SEMA6D protein" /protein_id="AAI50254.1" /db_xref="GeneID:80031" /db_xref="HGNC:HGNC:16770" /db_xref="MIM:609295" /translation="MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVF RGRPSGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQ QDRENCAMKGKHKDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEI SGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWI KEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTS FLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMD DIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSF IKSHPLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLK VLAKTSPFSLNDSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCII RIPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLLLTEDFFAFHNHSAEGY EQDTEFGNTAHLGDCHGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCY RDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLTS RKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSEKAHGHGASR KETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQNIDHPL TKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEV PPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSISA MPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSN GTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY" BASE COUNT 1742 a 1338 c 1239 g 1636 t ORIGIN 1 accaggacta ggaggcagcg gggagcgtgc ctgcgtcgct cggagcggtg acagcaagga 61 gcgcagcgcg gaggccgggc ggcaagggga gtttccagtc ctcgataagt ggagtccctg 121 ctctgcgctg cgccagcgcc ttccgcctgg gcccgcggtg ctagacacct gccgagtccg 181 aagcgggagt caggctgagc cttcggcccc caagatctcc aacctgagca tatgccagtt 241 gacatgggaa cactgaggcc agcaatttaa ggatttcaca tttgcttgca gtgaatgcgt 301 aatcctggat ctcttgttcg caaatcgaca gcctgaagcc ctctggaagc ccaagactgc 361 tggaggtttt tgaccagaca agccaacctt tttcaaggta gctcagtggc atttctgagc 421 aggggccacc ctgacttcac cttggcccac catgagggtc ttcctgcttt gtgcctacat 481 actgctgctg atggtttccc agttgagggc agtcagcttt cctgaagatg atgaacccct 541 taatactgtc gactatcact attcaaggca atatccggtt tttagaggac gcccttcagg 601 caatgaatcg cagcacaggc tggactttca gctgatgttg aaaattcgag acacacttta 661 tattgctggc agggatcaag tttatacagt aaacttaaat gaaatgccca aaacagaagt 721 aatacccaac aagaaactga catggcgatc aagacaacag gatcgagaaa actgtgctat 781 gaaaggcaag cataaagatg aatgccacaa ctttatcaaa gtatttgttc caagaaacga 841 tgagatggtt tttgtttgtg gtaccaatgc attcaatccc atgtgtagat actacaggtt 901 gagtacctta gaatatgatg gggaagaaat tagtggcctg gcaagatgcc catttgatgc 961 cagacaaacc aatgttgccc tctttgctga tgggaagctg tattctgcca cagtggctga 1021 cttcttggcc agcgatgccg ttatttatcg aagcatgggt gatggatctg cccttcgcac 1081 aataaaatat gattccaaat ggataaaaga gccacacttt cttcatgcca tagaatatgg 1141 aaactatgtc tatttcttct ttcgagaaat cgctgtcgaa cataataatt taggcaaggc 1201 tgtgtattcc cgcgtggccc gcatatgtaa aaacgacatg ggtggttccc agcgggtcct 1261 ggagaaacac tggacttcat ttctaaaggc tcggctgaac tgttctgtcc ctggagattc 1321 gtttttctac tttgatgttc tgcagtctat tacagacata atacaaatca atggcatccc 1381 cactgtggtc ggggtgttta ccacgcagct caatagcatc cctggttctg ctgtctgtgc 1441 atttagcatg gatgacattg aaaaagtatt caaaggacgg tttaaggaac agaaaactcc 1501 agattctgtt tggacagcag ttcccgaaga caaagtgcca aagccaaggc ctggctgttg 1561 tgcaaaacac ggccttgccg aagcttataa aacctccatc gatttcccgg atgaaactct 1621 gtcattcatc aaatctcatc ccctgatgga ctctgccgtt ccacccattg ccgatgagcc 1681 ctggttcaca aagactcggg tcaggtacag actgacggcc atctcagtgg accattcagc 1741 cggaccctac cagaactaca cagtcatctt tgttggctct gaagctggca tggtacttaa 1801 agttctggca aagaccagtc ctttctcttt gaacgacagc gtattactgg aagagattga 1861 agcctacaac catgcaaagt gcagtgctga gaatgaggaa gacaaaaagg tcatctcatt 1921 acagttggat aaagatcacc acgctttata tgtggcgttc tctagctgca ttatccgcat 1981 ccccctcagt cgctgtgagc gttatggatc atgtaaaaag tcttgtattg catctcgtga 2041 cccgtattgt ggctggttaa gccagggatc ctgtggtaga gtgaccccag ggatgctgct 2101 gttaaccgaa gacttctttg ctttccataa ccacagtgct gaaggatatg aacaagacac 2161 agaattcggc aacacagctc atctagggga ctgccatggt gtacgatggg aagtccagtc 2221 tggagagtcc aaccagatgg tccacatgaa tgtcctcatc acctgtgtct ttgctgcttt 2281 tgttttgggg gcattcattg caggtgtggc agtatactgc tatcgagaca tgtttgttcg 2341 gaaaaacaga aagatccata aagatgcaga gtccgcccag tcatgcacag actccagtgg 2401 aagttttgcc aaactgaatg gtctctttga cagccctgtc aaggaatacc aacagaatat 2461 tgattctcct aaactgtata gtaacctgct aaccagtcgg aaagagctac cacccaatgg 2521 agatactaaa tccatggtaa tggaccatcg agggcaacct ccagagttgg ctgctcttcc 2581 tactcctgag tctacacccg tgcttcacca gaagaccctg caggccatga agagccactc 2641 agaaaaggcc catggccatg gagcttcaag gaaagaaacc cctcagtttt ttccgtctag 2701 tccgccacct cattccccat taagtcatgg gcatatcccc agtgccattg ttcttccaaa 2761 tgctacccat gactacaaca cgtctttctc aaactccaat gctcacaaag ctgaaaagaa 2821 gcttcaaaac attgatcacc ctctcacaaa gtcatccagt aagagagatc accggcgttc 2881 tgttgattcc agaaataccc tcaatgatct cctgaagcat ctgaatgacc caaatagtaa 2941 ccccaaagcc atcatgggag acatccagat ggcacaccag aacttaatgc tggatcccat 3001 gggatcgatg tctgaggtcc cacctaaagt ccctaaccgg gaggcatcgc tatactcccc 3061 tccttcaact ctccccagaa atagcccaac caagcgagtg gatgtcccca ccactcctgg 3121 agtcccaatg acttctctgg aaagacaaag aggttatcac aaaaattcct cccagaggca 3181 ctctatatct gctatgccta aaaacttaaa ctcaccaaat ggtgttttgt tatccagaca 3241 gcctagtatg aaccgtggag gatatatgcc cacccccact ggggcgaagg tggactatat 3301 tcagggaaca ccagtgagtg ttcatctgca gccttccctc tccagacaga gcagctacac 3361 cagtaatggc actcttccta ggacgggact aaagaggacg ccgtccttaa aacctgacgt 3421 gccaccaaag ccttcctttg ttcctcaaac cccatctgtc agaccactga acaaatacac 3481 atactaggcc tcaagtgtgc tattcccatg tggctttatc ctgtccgtgt tgttgagagg 3541 atgatgttgt aagggtacct taaaacaaga gactcgcttg tattttaaga gaaccaagtg 3601 gccaaagaaa ctctttctaa ctttggcaac atcagaactt gccacatgta gctactgcag 3661 caaggcttct gtgtacttgc ctgaaaacaa aggaaggtgc tggtcattcc atttcttttg 3721 tttgaagcta aagagatgtg tagctcacag gggctacctt accagtataa agagctgata 3781 acagtactca gaagaatctg tgaacaaata cttgaaaatg ggttcaatgt agactgccat 3841 tatgtgtggt cttcccatta aatgtgaaca ttttaatatg tatgcattca ccttgcctct 3901 tgcacaaatg tcaaaaaaaa gatggtaata tctcaaagaa atgaacttgt agattaccaa 3961 gcagtttgct aaaaattcaa tctttgaccc aagctgtagc attttttttt catgtgtggc 4021 atctttttca tgccaccaac aaacttgttg tgtgtgtgcg tgtgtgtgtg tgtgtgtgtg 4081 tgtgtgtgtg tgtgttctgt acccactagg atttgtttag gtgcccattg catctttttg 4141 tgctatggag ttgtttacat taagcatgac cgaacgagag acaatactat ttcccacagg 4201 agtccattgg gttcagcttt gaaagaggaa tagaatcgag gctcctttga ccatcaaaat 4261 gatgaacttt acttatgtgg tacccaatgc cagaatgtaa gagttgcaag tgattttgtg 4321 ctgctattca ttaaaacttg tattccagtc ttgccagctt aaggagatca agatattaag 4381 aggtatcctt gatttatttt ccagtattca gtagtaaaat tttcctgtcc actgtgaatc 4441 aaagcctgag tcactctatt taaccttgga cacactaata aggttttatt ttgattgtgt 4501 tcgtttcccc ccccccaata gtaaaatttc tcctccttta actcctccta ccccccaagg 4561 taagaaacaa aaaacaaaca aacaaacaaa aatagaagac aaaagaaaga catatgaaag 4621 gaattgtaat tggcttaaca gaaacagtct gtaaaaacct aacagtggtg caatcatgtt 4681 gtctgtgttg tgttatgtga gaattttctc ctaagtcatg caggtaatga caatatactg 4741 taaataccac atgtgagttt acctgaatct gtgcattttg tgccttattc atgagaatga 4801 tagaagtact aaaatctgtc aagtgttttc agtatagcac attatttact gagtgccagt 4861 tgtaaatgtt tttcaaccag cacctaaaaa gactcttttc aaaaaatcac agaaacaacc 4921 taggacaatt atttgttaca taatccgacc tcatagcagc attacattct ttgccgtgat 4981 aaacattcca ctcctgcttt cctaaggatg aaacagtgat aatgtgaact caaatgaggt 5041 ttcctgggta atgtgacacc tgcagaaact atagagcgtc atttatacgt agtttggcag 5101 aaaccactta cggctgatga tgcgcaaccc tgctgactgt ttcagttaat atgctgcaca 5161 ccacacactt gtttagtgaa ccaaatctag aaagtaccaa ggcagaggta tgctcctgct 5221 gtaatcaggc aaatgagttc aactggattt cttttgacaa tactgttggt acctattact 5281 tgggggagga catgttgcag aagaccagat catttttata cagaatgtga aatactgata 5341 cagttattct tttttttaaa gaacattgtt ttataaagaa cgtgatttcc agtgatctct 5401 ggaagcgcta aagctaaaat ttctgttctt gaaacacttc agctttgcaa ctaaaatatt 5461 acagattaat aataaattaa accaaccaat gataaacact actcagtcca ccaacaacaa 5521 acgtgtttga attcacctta ccaatattaa tcccagcgtg tgtaaaacag aacagtaact 5581 ctatgtgacc ccagataaca ttttgtaaca ttgtgcttcc ttgtagtttg taatgtgagt 5641 tcaatcagta tttatgttga aatttctaac attaaatcta gtctctatcc tgttaattta 5701 atttttaaat gctttatcca tttgtgcaaa ggtaaacgca gattgtatct tttttaatgg 5761 tacggcataa aaagtaaccc tcaagtgaag tgtctctata ctgttttata gagtacttta 5821 acatgaatag ataccttgta aacttgtatt gtggatgtgt aaataatatg tactttgggt 5881 ttttaacacc gcatgtaaag tcaaaataaa atatacaaat cattaaaaaa aaaaaaaaaa 5941 aaaaaaaaaa aaaaa //