LOCUS BC150248 6830 bp mRNA linear SYN 02-SEP-2016
DEFINITION Synthetic construct Homo sapiens ELKS/RAB6-interacting/CAST family
member 1, mRNA (cDNA clone MGC:166804 IMAGE:9007473), complete cds.
ACCESSION BC150248
VERSION BC150248.1
KEYWORDS MGC.
SOURCE synthetic construct
ORGANISM synthetic construct
other sequences; artificial sequences.
REFERENCE 1 (bases 1 to 6830)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6830)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Kazusa DNA Research Inst.
cDNA Library Preparation: Kazusa DNA Research Institute
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAH Plate: 1 Row: Column: 0.
FEATURES Location/Qualifiers
source 1..6830
/db_xref="H-InvDB:HIT000435744"
/organism="synthetic construct"
/mol_type="mRNA"
/isolation_source="Homo sapiens; Clones donated by Kazusa
DNA Research Inst."
/db_xref="taxon:32630"
/clone="MGC:166804 IMAGE:9007473"
/clone_lib="Kazusa-KIAA-pBCSK+"
/lab_host="DH5alpha T1-resistant"
/note="Vector: pBC SK+"
gene 1..6830
/gene="ERC1"
/gene_synonym="Cast2"
/gene_synonym="ELKS"
/db_xref="GeneID:23085"
/db_xref="HGNC:HGNC:17072"
/db_xref="MIM:607127"
CDS 145..3123
/gene="ERC1"
/gene_synonym="Cast2"
/gene_synonym="ELKS"
/codon_start=1
/transl_table=11
/product="ELKS/RAB6-interacting/CAST family member 1"
/protein_id="AAI50249.1"
/db_xref="GeneID:23085"
/db_xref="HGNC:HGNC:17072"
/db_xref="MIM:607127"
/translation="MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGS
SVGGGSGKTLSMENIQSLNAAYATSGPMYLSDHENVGSETPKSTMTLGRSGGRLPYGV
RMTAMGSSPNIASSGVASDTIAFGEHHLPPVSMASTVPHSLRQARDNTIMDLQTQLKE
VLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVV
QEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHER
QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR
RLAEAEMHVHHLESLLEQKEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKDSKIS
SMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRK
DTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKET
MLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQM
SSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKK
DLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEEC
LKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEV
ENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLN
DSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMA
MEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK
DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSH
SNQTNHKPSPDQDEEEGIWA"
BASE COUNT 1982 a 1577 c 1717 g 1554 t
ORIGIN
1 gtacaaaaaa gcaggctctt cgctggggac cttcttctga ttaaccttaa accaacttgt
61 agccatagag acacctcaca aggttcccat ttttgttgtt gttgttgttg attttctgct
121 cacacctttc ctgaccttgc aaccatgtat ggaagtgccc gctctgttgg gaaggtggag
181 ccgagcagcc agagccctgg gcgttcaccc aggcttccac gttcccctcg cttgggtcac
241 cgtcgaacca acagtacggg agggagttcg ggaagcagtg ttggaggtgg cagtgggaaa
301 accctttcaa tggaaaatat acaatcttta aatgctgcct atgccacctc tggccctatg
361 tatctaagtg accatgaaaa tgtgggttca gaaacaccta aaagcaccat gacacttggc
421 cgttctgggg gacgtctgcc ttacggtgtt cggatgactg ctatgggtag tagccccaat
481 atagctagca gtggggttgc tagtgacacc atagcatttg gagagcatca cctccctcct
541 gtgagtatgg catccactgt acctcactcc cttcgtcagg cgagagataa cacaatcatg
601 gatctgcaga cacagctgaa ggaagtatta agagaaaatg atctcttgcg gaaggatgtg
661 gaagtaaagg agagcaaatt gagttcttca atgaatagca tcaagacctt ctggagccca
721 gagctgaaga aggaacgagc cctgagaaaa gatgaagctt ccaaaatcac catttggaag
781 gaacagtaca gagttgtaca ggaggaaaac cagcacatgc agatgacaat ccaggctctc
841 caggatgaat tgcggatcca gagggacctg aatcagctgt ttcagcagga tagtagcagc
901 aggactggcg aaccttgtgt agcagagctg acagaggaga actttcagag gcttcatgct
961 gagcatgagc ggcaggccaa agagctgttt cttcttcgaa agacattgga ggaaatggag
1021 ctgcgtattg agactcaaaa gcagacccta aatgctcggg atgaatccat taagaagctt
1081 ctggaaatgt tgcagagcaa aggactttct gccaaggcta ccgaggaaga ccatgagaga
1141 acaagacgac tggcagaggc agagatgcac gttcatcacc tagaaagcct tttggagcag
1201 aaggaaaaag agaacagtat gttgagagag gagatgcatc gaaggtttga gaatgctcct
1261 gattctgcca aaacaaaagc tctgcaaact gttattgaga tgaaggattc aaaaatttcc
1321 tctatggagc gtgggcttcg agacctggaa gaggaaattc agatgctgaa atcgaatggt
1381 gctttgagta ctgaggaaag ggaagaagaa atgaagcaaa tggaagtgta tcggagccat
1441 tctaaattta tgaaaaataa gattggccag gtgaaacagg agctgtccag aaaggacaca
1501 gaactactcg ccctgcagac aaagctagaa acactcacaa accagttctc agatagtaaa
1561 cagcacattg aagtgttgaa ggagtccttg actgctaagg agcagagggc tgccatcctg
1621 cagactgagg tggatgctct ccgattgcgt ttggaagaga aggaaaccat gttgaataaa
1681 aagacaaaac aaattcagga tatggctgaa gagaagggga cacaagctgg agagatacat
1741 gacctcaagg acatgttgga tgtgaaggag cggaaggtta atgttcttca gaagaagatt
1801 gaaaatcttc aagagcagct tagagacaag gaaaagcaga tgagcagctt gaaagaacgg
1861 gtcaaatcct tgcaggctga caccaccaac actgacactg ccttgacaac tttggaggag
1921 gcccttgcag agaaagagcg gacaattgaa cgcttaaagg agcagaggga cagagatgag
1981 cgagagaagc aagaggaaat tgataactac aaaaaagatc ttaaagactt gaaggaaaaa
2041 gtcagcctgt tgcaaggcga cctttcagag aaagaggctt cacttttgga tctgaaagag
2101 catgcttctt ctctggcatc ctcaggactg aaaaaggact cacggcttaa gacactagag
2161 attgctttgg agcagaagaa ggaggagtgt ctgaaaatgg aatcacaatt gaaaaaggca
2221 catgaggcag cattggaagc cagagccagt ccagagatga gtgaccgaat acagcacttg
2281 gagagagaga tcaccaggta caaagatgaa tctagcaagg cccaggcaga agttgatcga
2341 ctcttagaaa tcttgaagga ggtggaaaat gagaagaatg acaaagataa gaagatagct
2401 gagttggaaa gtctcacctc aaggcaagtg aaagaccaga ataagaaggt agcaaatctg
2461 aagcacaagg aacaggtgga aaaaaagaag agtgcacaaa tgttagagga ggcgcgacga
2521 cgggaggaca atctcaacga cagctctcag cagctacagg acagtctccg taagaaggat
2581 gacaggattg aagagctgga agaagcacta agagaaagtg tacagataac tgcagagcgg
2641 gaaatggtgc tagcacaaga ggaatcagcc aggaccaatg ctgaaaaaca ggtggaggag
2701 ttactgatgg ccatggagaa ggtaaagcag gaactagaat ccatgaaagc aaagctgtcc
2761 tccacccagc agtctctggc agaaaaggaa actcacttga ctaatcttcg ggcagagaga
2821 aggaaacact tagaggaagt tctggagatg aagcaagaag ctcttctggc tgccattagt
2881 gaaaaagacg ccaatatagc tctcttggag ctttcgtcct ctaagaagaa gacccaagag
2941 gaagtggctg ccctgaagcg ggagaaggat cgtctggtac agcagcttaa gcagcagacg
3001 caaaatcgaa tgaagctaat ggccgacaac tacgaggatg accacttcaa atcctcccat
3061 tccaatcaaa caaatcacaa gccctcccca gaccaggatg aggaggaggg tatatgggca
3121 tagccaatca gaggcttagt tcagccattt tgttcagaac gatcatccag cccctcttag
3181 aacttgacca aaatagaagt aaattaaagt tgtacattgg acacctgaca accctctgcc
3241 atgaccgaga ccccctgatc ctccgtggac tcactccacc agcttcctat aacttggacg
3301 atgaccaggc ggcttgggag aatgagctgc agaagatgac ccgggggcag cttcaggatg
3361 agttagagaa aggtgaacgg gacaatgcag aactgcagga gtttgccaac gccattcttc
3421 agcagatagc agaccattgt cccgacatcc tagagcaagt ggtcaacgcc ctggaagagt
3481 cctcttgacc ctgctttatg gggaagcctg aggtagtcaa cccaggagcc aagaaaagag
3541 aactacgagg aacaggtgcc cggaaccttc ttggcaccaa acactacaaa cttcatccca
3601 acttgctcac ttgaagaagt gtgattccag caccgtttct acatctgcca tcttactctg
3661 cctttctgct ttggatgtgg tctctacact aaccttcttg atgtccaggg tagataaagg
3721 gtcgaatctc tctgaagaac tgccacctgg tcatcagcag tggagaactg tgggagctgg
3781 tggctctgcc ctgacagaga gccatggagc agaggagcct ctcacctcct gtcctctgac
3841 atgagaatga aaccaggaat ggacttggag ttcaacaggc tgagaggatg cctccaatgg
3901 accagagagc tgagtgttct aatatcacaa taggtgcttt ctcctaaaag ggcaaaaaac
3961 aatctcaaaa agattagaaa aagagaaggg gggaagggaa gagaaaatcg actcttcttt
4021 ttactgtctc ttctgcttac tttccacatg agatgctttg taccggggag ctgtgagcag
4081 gcctcacgat ggcttgggag cactcgttct cccaaggtct gagtcttcat ccagccctgc
4141 ctgtctgtcg cagccttcct cactctgttc ctcggccagt taacaagaag atggtgtgag
4201 gtgttctcca ccagtctctc ctgtttgaga ctgttgacgt tatcatactg aggtgttaga
4261 tcaaatatct ctaattgaag aacatgtgag gttgaaagag caccagccag ggcaacatag
4321 cgtgaccctg tctctacaaa aaattaaaaa gagaacatac aaagttgaca tatgagaccc
4381 tgttgtcccc gcctgcagct ttgccccagt aacagatgcc cgttgctctt gggctggttt
4441 cccctgaaca cctccaagag gctgcctgcc ttgccagcac ccgtgtcctg agctcctgca
4501 gcccagtggc tgctgaagtt gtgatccctc actcaccctg ctagctttgc ccttgactcg
4561 tcttctctga acctcagcct cgtgcattgc ctggaacctt cttctagcat aaatgaaggt
4621 ttttcctcct acacacattc cttcctcggt tatttcattc agagaatatt tatgaaatgc
4681 ctactgtgtg caagtcatcc atccttgaaa aggccacttc tcagtgaggg agagatgtag
4741 tggattctgt gagacatacc tgctggagtt gaagcagtaa atagcatgtc cttcccctcc
4801 ccgatcttaa ggtgtgtttt ctagaaaagt tccctaatgg aattcatgag tttgggggtc
4861 tcagtcaccc gcttgcctgt aggattccat ttgatgattc tggatttttg ctgtttgtta
4921 ttgcccttag aggggctctg agtatctact tgtgggtggc catttcctga catctgcatg
4981 tacctcgtgg aattcagcca gcttcatgtt gcaaatcaga aagctgaccc caagactgca
5041 aatcaatgaa ggtattggca ttgttaaggt cgtagcgtag acaacagcag tcataaataa
5101 ttaggcagga acttaaccca aatctagttc tttgaccacc tctaccacca gaacccagca
5161 gacactcaca tctcctggta agagttgctg gactcgatgt ttttgttttg cattttctcc
5221 tctccttccc cacttactca gagaatttaa agtctgtaga gtcagcacag ccccatcagt
5281 ccaggaactt cccaccacca gcccttgact gtcccattaa ctgacatggt cagatttcca
5341 gctcccccta ctccctgctg tgaaacaatc cctctccctg tgagaggaaa ctgtggagcg
5401 tttcttatcg aaggttaaat ggactctgct cataaacctc ttactgagat gcttcctgat
5461 agccaggctg gccagagagg ggtgcagggg ttagatagta agtggtggtc gtttgtggtc
5521 agttacctca attctgttca ttgcagtgcc cgtaaaccat gtagaaagct cccagcactg
5581 aaaggcagga gtgttagcat ctcgctttat ccaccataac gtaaagaact gcggtgtgat
5641 aacagccttc acggggccac ggtggaacca agacagcagg cgaggccatg cctaaacaag
5701 tggtctggca cgggcactgg ccagctgctc tctccaagca ggtggcccag atcccaccca
5761 cgtggacttt ctcatcaggt gcagcgcctg ccactctcag ccactgggtg tgtgactctc
5821 ctcttcatct cagcattctc catcacttcc cctccagaaa aacggatgga aggaagccct
5881 ctgtgacact gcttctgaga agaagcattt ccgggaccga tatcatctgt ctggtctctg
5941 tgaacagcaa ggaatcttct tgaccgttct tgggcactgg aggctggcta ggagttcagt
6001 aataaacgtg gccttcgtgc tgtagggcag agtggatgca gtttgtagct ttcagagtgt
6061 ctcattgagt ctagatcatt gaaccaacac ttaaccaaat gtcccactcc catcacacta
6121 ggacttgtca ttccatgccc ctctcctagt ggtcatggtt tcatatgggc atacaactgc
6181 tactgaagtt atatagcctt gaaaactcag tgcaggttgc ccttaatttt ccccaaaccc
6241 ctccatcggc aagtctagtt gccctttagc acctaaagat ctgcacccca aaccaatgtc
6301 accataaaga gggcacgaag aagagtgggt gtgatcccaa cggggttttg taactgaaga
6361 agcccagtgt gagcttctca tcttttcata tacctctaac ccccggtact cattgaatca
6421 ttgatgaggt atctcaattg agatttgcaa ggactttgat accatttgaa atggaaaaat
6481 tttgaacggg ctttaacatg tttaagaaat atggatgggg ccggccacag tggctcacgc
6541 ctgtaatccc agaactctgg aaggctgagg caggcggatc acctgagatc aggagttcga
6601 ggccagcctg gccaagatgg caaaaacccc gactctacta aaaatacaaa attagccagg
6661 cgtggtggcg tacgcctgta atcccagcta ctcaggaggc aggagaatcg cttgagcctg
6721 ggaggcagag gctgcggtga gccgagatcg tgtcactgca ctccagcctg ggtgacagag
6781 actccattta aaaaaaaaaa aaaaaaagcg gccgcccagc tttcttgtac
//