LOCUS BC150201 4957 bp mRNA linear HUM 09-JUN-2008 DEFINITION Homo sapiens tet oncogene family member 2, mRNA (cDNA clone IMAGE:40148803), complete cds. ACCESSION BC150201 VERSION BC150201.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4957) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4957) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-JUL-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Novartis Institute for Biomedical Research cDNA Library Preparation: Novartis Institute for Biomedical Research cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 306 Row: m Column: 21 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..4957 /db_xref="H-InvDB:HIT000435727" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:40148803" /tissue_type="Donated clones,Novartis FGA collection" /clone_lib="NIH_MGC_417" /lab_host="DH5a" /note="Vector: pCMV-SPORT6" gene 1..4957 /gene="TET2" /db_xref="GeneID:54790" /db_xref="HGNC:HGNC:25941" CDS 104..2017 /gene="TET2" /codon_start=1 /product="TET2 protein" /protein_id="AAI50202.1" /db_xref="GeneID:54790" /db_xref="HGNC:HGNC:25941" /translation="MEQDRTNHVEGNRLSPFLIPSPPICQTERLATKLQNGSPLPERA HPEVNGDTKWHSFKSYYGIPCMKGSQNSRVSPDFTQESRGYSKCLQNGGIKRTVSEPS LSGLLQIKKLKQDQKANGERRNFGVSQERNPGESSQPNVSDLSDKKESVSSVAQENAV KDFTSFSTHNCSGPENPELQILNEQEGKSANYHDKNIVLLKNKAVLMPNGATVSASSV EHTHGELLEKTLSQYYPDCVSIAVQKTTSHINAINSQATNELSCEITHPSHTSGQINS AQTSNSELPPKPAAVVSEACDADDADNASKLAAMLNTCSFQKPEQLQQQKSVFEICPS PAENNIQGTTKLASGEEFCSGSSSNLQAPGGSSERYLKQNEMNGAYFKQSSVFTKDSF SATTTPPPPSQLLLSPPPPLPQVPQLPSEGKSTLNGGVLEEHHHYPNQSNTTLLREVK IEGKPEAPPSQSPNPSTHVCSPSPMLSERPQNNCVNRNDIQTAGTMTVPLCSEKTRPM SEHLKHNPPIFGSSGELQDNCQQLMRNKEQEILKGRDKEQTRDLVPPTQHYLKPGWIE LKAPRFHQAESHLKRNEASLPSILQYQPNLSNQMTSKQYTGNSNMPGGLPRQAYTQKT TQPSTSHKCTKLK" BASE COUNT 1679 a 1103 c 953 g 1222 t ORIGIN 1 gaaaggagac ccgactgcaa ctgctggatt gctgcaaggc tgagggacga gaacgagaat 61 tcaactagag ggcagccttg tggatggccc cgaagcaagc ctgatggaac aggatagaac 121 caaccatgtt gagggcaaca gactaagtcc attcctgata ccatcacctc ccatttgcca 181 gacagaacgt ctggctacaa agctccagaa tggaagccca ctgcctgaga gagctcatcc 241 agaagtaaat ggagacacca agtggcactc tttcaaaagt tattatggaa taccctgtat 301 gaagggaagc cagaatagtc gtgtgagtcc tgactttaca caagaaagta gagggtattc 361 caagtgtttg caaaatggag gaataaaacg cacagttagt gaaccttctc tctctgggct 421 ccttcagatc aagaaattga aacaagacca aaaggctaat ggagaaagac gtaacttcgg 481 ggtaagccaa gaaagaaatc caggtgaaag cagtcaacca aatgtctccg atttgagtga 541 taagaaagaa tctgtgagtt ctgtagccca agaaaatgca gttaaagatt tcaccagttt 601 ttcaacacat aactgcagtg ggcctgaaaa tccagagctt cagattctga atgagcagga 661 ggggaaaagt gctaattacc atgacaagaa cattgtatta cttaaaaaca aggcagtgct 721 aatgcctaat ggtgctacag tttctgcctc ttccgtggaa cacacacatg gtgaactcct 781 ggaaaaaaca ctgtctcaat attatccaga ttgtgtttcc attgcggtgc agaaaaccac 841 atctcacata aatgccatta acagtcaggc tactaatgag ttgtcctgtg agatcactca 901 cccatcgcat acctcagggc agatcaattc cgcacagacc tctaactctg agctgcctcc 961 aaagccagct gcagtggtga gtgaggcctg tgatgctgat gatgctgata atgccagtaa 1021 actagctgca atgctaaata cctgttcctt tcagaaacca gaacaactac aacaacaaaa 1081 atcagttttt gagatatgcc catctcctgc agaaaataac atccagggaa ccacaaagct 1141 agcgtctggt gaagaattct gttcaggttc cagcagcaat ttgcaagctc ctggtggcag 1201 ctctgaacgg tatttaaaac aaaatgaaat gaatggtgct tacttcaagc aaagctcagt 1261 gttcactaag gattcctttt ctgccactac cacaccacca ccaccatcac aattgcttct 1321 ttctccccct cctcctcttc cacaggttcc tcagcttcct tcagaaggaa aaagcactct 1381 gaatggtgga gttttagaag aacaccacca ctaccccaac caaagtaaca caacactttt 1441 aagggaagtg aaaatagagg gtaaacctga ggcaccacct tcccagagtc ctaatccatc 1501 tacacatgta tgcagccctt ctccgatgct ttctgaaagg cctcagaata attgtgtgaa 1561 caggaatgac atacagactg cagggacaat gactgttcca ttgtgttctg agaaaacaag 1621 accaatgtca gaacacctca agcataaccc accaattttt ggtagcagtg gagagctaca 1681 ggacaactgc cagcagttga tgagaaacaa agagcaagag attctgaagg gtcgagacaa 1741 ggagcaaaca cgagatcttg tgcccccaac acagcactat ctgaaaccag gatggattga 1801 attgaaggcc cctcgttttc accaagcgga atcccatcta aaacgtaatg aggcatcact 1861 gccatcaatt cttcagtatc aacccaatct ctccaatcaa atgacctcca aacaatacac 1921 tggaaattcc aacatgcctg gggggctccc aaggcaagct tacacccaga aaacaacaca 1981 gccgagcaca agtcacaaat gtaccaagtt gaaatgaatc aagggcagtc ccaaggtaca 2041 gtggaccaac atctccagtt ccaaaaaccc tcacaccagg tgcacttctc caaaacagac 2101 catttaccaa aagctcatgt gcagtcactg tgtggcacta gatttcattt tcaacaaaga 2161 gcagattccc aaactgaaaa acttatgtcc ccagtgttga aacagcactt gaatcaacag 2221 gcttcagaga ctgagccatt ttcaaactca caccttttgc aacataagcc tcataaacag 2281 gcagcacaaa cacaaccatc ccagagttca catctccctc aaaaccagca acagcagcaa 2341 aaattacaaa taaagaataa agaggaaata ctccagactt ttcctcaccc ccaaagcaac 2401 aatgatcagc aaagagaagg atcattcttt ggccagacta aagtggaaga atgttttcat 2461 ggtgaaaatc agtattcaaa atcaagcgag ttcgagactc ataatgtcca aatgggactg 2521 gaggaagtac agaatataaa tcgtagaaat tccccttata gtcagaccat gaaatcaagt 2581 gcatgcaaaa tacaggtttc ttgttcaaac aatacacacc tagtttcaga gaataaagaa 2641 cagactacac atcctgaact ttttgcagga aacaagaccc aaaacttgca tcacatgcaa 2701 tattttccaa ataatgtgat cccaaagcaa gatcttcttc acaggtgctt tcaagaacag 2761 gagcagaagt cacaacaagc ttcagttcta cagggatata aaaatagaaa ccaagatatg 2821 tctggtcaac aagctgcgca acttgctcag caaaggtact tgatacataa ccatgcaaat 2881 gtttttcctg tgcctgacca gggaggaagt cacactcaga cccctcccca gaaggacact 2941 caaaagcatg ctgctctaag gtggcatctc ttacagaagc aagaacagca gcaaacacag 3001 caaccccaaa ctgagtcttg ccatagtcag atgcacaggc caattaaggt ggaacctgga 3061 tgcaagccac atgcctgtat gcacacagca ccaccagaaa acaaaacatg gaaaaaggta 3121 actaagcaag agaatccacc tgcaagctgt gataatgtgc agcaaaagag catcattgag 3181 accatggagc agcatctgaa gcagtttcac gccaagtcgt tatttgacca taaggctctt 3241 actctcaaat cacagaagca agtaaaagtt gaaatgtcag ggccagtcac agttttgact 3301 agacaaacca ctgctgcaga acttgatagc cacaccccag ctttagagca gcaaacaact 3361 tcttcagaaa agacaccaac caaaagaaca gctgcttctg ttctcaataa ttttatagag 3421 tcaccttcca aattactaga tactcctata aaaaatttat tggatacacc tgtcaagact 3481 caatatgatt tcccatcttg cagatgtgta gagcaaatta ttgaaaaaga tgaaggtcct 3541 ttttataccc atctaggagc aggtcctaat gtggcagcta ttagagaaat catggaagaa 3601 aggtaattaa cgcaaaggca cagggcagat taacgtttat ccttttgtat atgtcagaat 3661 ttttccagcc ttcacacaca aagcagtaaa caattgtaaa ttgagtaatt attagtaggc 3721 ttagctattc tagggttgcc aacactacac actgtgctat tcaccagaga gtcacaatat 3781 ttgacaggac taatagtctg ctagctggca caggctgccc actttgcgat ggatgccaga 3841 aaacccaggc atgaacagga atcggccagc caggctgcca gccacaaggt actggcacag 3901 gctccaacga gaggtcccac tctggctttc ccacctgata ataaagtgtc aaagcagaaa 3961 gactggtaaa gtgtggtata agaaaagaac cactgaatta aattcaccta gtgttgcaaa 4021 tgagtactta tctctaagtt ttcttttacc ataaaaagag agcaagtgtg atatgttgaa 4081 tagaaagaga aacatactat ttacagctgc cttttttttt tttttcgcta tcaatcacag 4141 gtatacaagt acttgccttt actcctgcat gtagaagact cttatgagcg agataatgca 4201 gagaaggcct ttcatataaa tttatacagc tctgagctgt tcttcttcta gggtgccttt 4261 tcattaagag gtaggcagta ttattattaa agtacttagg atacattggg gcagctagga 4321 catattcagt atcattcttg ctccatttcc aaattattca tttctaaatt agcatgtaga 4381 agttcactaa ataatcatct agtggcctgg cagaaatagt gaatttccct aagtgccttt 4441 tttttgttgt ttttttgttt tgttttttaa acaagcagta ggtggtgctt tggtcataag 4501 ggaagatata gttttctagg actattccat attttccatg tggctggata ctaactattt 4561 gccagcctcc ttttctaaat tgtgagacat tcttggagga acagttctaa ctaaaatcta 4621 ttatgactcc ccaagtttta aaatagctaa atttagtaag ggaaaaaata gtttatgttt 4681 tagaagactg aacttagcaa actaacctga attttgtgct ttgtgaaatt ttatatcgaa 4741 atgagctttc ccattttcac ccacatgtaa tttacaaaat agttcattac aattatctgt 4801 acattttgat attgaggaaa aacaaggctt aaaaaccatt atccagtttg cttggcgtag 4861 acctgtttaa aaaataataa accgttcatt tctcaggatg tggtcataga ataaagttat 4921 gctcaaatgt taaaaaaaaa aaaaaaaaaa aaaaaaa //