LOCUS BC150172 4758 bp mRNA linear HUM 17-JUL-2007
DEFINITION Homo sapiens protocadherin gamma subfamily B, 3, mRNA (cDNA clone
MGC:164749 IMAGE:40147143), complete cds.
ACCESSION BC150172
VERSION BC150172.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4758)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4758)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Novartis Institute for Biomedical Research
cDNA Library Preparation: Novartis Institute for Biomedical
Research
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 306 Row: a Column: 16.
FEATURES Location/Qualifiers
source 1..4758
/db_xref="H-InvDB:HIT000435698"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164749 IMAGE:40147143"
/tissue_type="Donated clones,Novartis FGA collection"
/clone_lib="NIH_MGC_417"
/lab_host="DH5a"
/note="Vector: pCMV-SPORT6"
gene 1..4758
/gene="PCDHGB3"
/gene_synonym="PCDH-GAMMA-B3"
/db_xref="GeneID:56102"
/db_xref="HGNC:HGNC:8710"
/db_xref="MIM:606301"
CDS 132..2921
/gene="PCDHGB3"
/gene_synonym="PCDH-GAMMA-B3"
/codon_start=1
/product="protocadherin gamma subfamily B, 3"
/protein_id="AAI50173.1"
/db_xref="GeneID:56102"
/db_xref="HGNC:HGNC:8710"
/db_xref="MIM:606301"
/translation="MGNSSGWRGPAGQRRMLFLFLLSLLDQALSEPIRYAIPEELDRG
SLVGNLAKDLGFGVGDLPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTC
VLEFEMVAEKPLNFFHVTVLIQDINDNPPTFSQNITELEISELALTGATFALESAQDP
DVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGG
EPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAE
IIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQ
IDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDLDSGFNGEILCQLKGNFPF
KIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSSSKTITLHILDVNDNVP
VFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVASDLEPRELSSYVSVS
ARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDDRNDNAPLVLYPA
LGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEPGLFSLGLRTG
EVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPDLSDRPTPS
DPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQPGVCFKTVPGVL
PTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEASWFESNDNPEMPS
NSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEA
ADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA
GGNGNKKKSGKKEKK"
BASE COUNT 1141 a 1368 c 1220 g 1029 t
ORIGIN
1 cagcggagac acccattaga gaacccaagc acaaagacaa agcaaatagt tggtcctgct
61 cggagaactc ttgggattat ttaaagatct cctctcctcg gatttagaaa ggcaaaggcg
121 cagagagcgg gatgggaaat agctccggat ggaggggccc agcagggcag aggcgaatgc
181 tatttctctt cctgctctct ttgttagacc aggctctctc cgaaccgatc cgctacgcta
241 ttcccgagga gctggacagg ggctcgctgg tagggaacct cgccaaggac ctggggtttg
301 gcgtggggga tttacctact aggaacctgc gggttattgc agagaagaaa ttctttaccg
361 tgagccccga aaatgggaac ttacttgtga gcgaccgtat agaccgagag gagatttgtg
421 gcaagaagtc gacgtgtgtt ctggaatttg aaatggttgc tgaaaagcct ttaaactttt
481 ttcatgtaac tgtgctgatc caggatatta acgacaaccc accgaccttt agccaaaata
541 tcactgagct ggaaatcagc gaactggctc tcactggagc cacatttgcc ctggaatctg
601 cgcaagatcc tgatgtaggt gtcaattcgc tgcagcagta ctacctcagc cctgatccgc
661 acttctcttt gattcagaag gagaacctgg atggcagtag gtacccagag ctagtactga
721 aagcacccct ggacagggaa gagcagccac atcaccacct ggtcctcaca gctgtggatg
781 ggggcgagcc ctccagaagc tgtaccaccc agatcagggt aattgtcgca gatgcaaatg
841 ataacccccc agtatttact caggacatgt acagggtcaa tgttgcagag aacctgcccg
901 ctggctcctc cgtattaaaa gtgatggcca ttgacatgga tgagggcatc aatgccgaaa
961 tcatctatgc cttcatcaat attggcaagg aagtgagaca actgttcaag ctggacagta
1021 aaacggggga actcaccact attggagaac tggactttga agagagagat agctacacaa
1081 ttggggtgga agcaaaggat ggtggacatc acactgcata ttgtaaagta cagatagata
1141 tttcagatga aaatgacaat gccccggaga taaccctggc ttctgaatcc caacatatac
1201 aagaagatgc tgagctgggg actgccgttg ccctgatcaa aacacatgat ctagattctg
1261 gatttaatgg agaaatccta tgccaactaa aaggaaactt cccctttaaa atcgttcaag
1321 ataccaaaaa cacatacagg ttggtgacag atggagccct ggaccgggag cagatcccag
1381 aatacaatgt gacgatcaca gctaccgaca aaggcaatcc accgctctcc tccagcaaga
1441 ccatcactct gcacatcctt gatgtcaacg acaacgttcc cgttttccac caggcctcct
1501 acaccgtgca tgtagctgag aacaatccgc ctggagcctc cattgcgcat gtcagagcct
1561 cggatcccga cttgggacct aatggccttg tctcctacta catcgtggcc agtgacctgg
1621 agccgcggga gctgtcgtcc tacgtgtccg tgagcgcgcg gagcggggtg gtgttcgcgc
1681 agcgagcctt cgaccacgag cagctgcgtg ccttcgagct cactctgcag gcccgcgacc
1741 agggctcgcc tacgctcagc gccaacgtga gcctgcgcgt gttggtggac gaccgcaacg
1801 acaatgcacc gctggtgctg tacccagctc tggggcccga aggctctgcg ctcttcgata
1861 tggtgccgcg ctctgcagag cctggctacc tggtgaccaa ggtggtggcg gtggacgcag
1921 actcgggata caacgcctgg ctgtcctacc acattgtgca ggccagcgag cccgggctgt
1981 tcagcctggg cctgcgcacg ggtgaggtgc gcacggcgcg taccttgggc gacagggagg
2041 ccgcccgcca gcgcctgctg gtcactgtgc gtgatggagg acagcagcct ctttcagcca
2101 ccgtcatgct gcacctaatc ttcgcagata gcttgcaaga gatacaacct gaccttagcg
2161 accgccccac tccctctgac cctcaggcgg agctacagtt tcacctagta gtggcgttgg
2221 ccttgatctc agtgctcttc ctcctcgcgg tgattctggc aatctccctg cgcctgcgat
2281 gctcctccag acccgccact gagggctact ttcagcctgg tgtctgcttc aagactgtac
2341 ctggagttct ccccacctac agcgaaagga ctttgcctta ttcctacaat ccgtgtgctg
2401 cctcacattc ctcaaacacc gagtttaaat ttctcaatat aaaggctgaa aatgctgcac
2461 cacaagatct tctatgtgat gaagcctctt ggtttgaaag taatgacaat ccagaaatgc
2521 cttctaattc aggcaatttg caaaagcaag ccccgcccaa cacggactgg cgtttctctc
2581 aggcccagag acccggcacc agcggctccc aaaatggcga tgacaccggc acctggccca
2641 acaaccagtt tgacacagag atgctgcaag ccatgatctt ggcgtccgcc agtgaagctg
2701 ctgatgggag ctccaccctg ggagggggtg ccggcaccat gggattgagc gcccgctacg
2761 gaccccagtt caccctgcag cacgtgcccg actaccgcca gaatgtctac atcccaggca
2821 gcaatgccac actgaccaac gcagctggca aacgggatgg caaggcccca gcaggtggca
2881 atggcaacaa gaagaagtcg ggcaagaagg agaagaagta acatggaggc caggccaaga
2941 gccacagggc ggcctctccc caaccagccc agcttctcct tacctgcacc caggcctcag
3001 agtttcaggg ctaaccccca gaatactggt aggggccaag gccatgctcc ccttgggaaa
3061 cagaaacaag tgcccagtca gcacctaccc cttccccccc agggggttga atatgcaaaa
3121 gcagttccgc tgggaacccc catccaatca actgctgtac ccatgggggt agtggggtta
3181 ctgtagacac caagaaccat ttgccacacc ccgtttagtt acagctgaac tcctccatct
3241 tccaaatcaa tcaggcccat ccatcccatg cctccctcct ccccacccca ctccaacagt
3301 tcctctttcc cgagtaaggt ggttggggtg ttgaagtacc aagtaaccta caagcctcct
3361 agttctgaaa agttggaagg gcatcatgac ctcttggcct ctcctttgat tctcaatctt
3421 cccccaaagc atggtttggt gccagcccct tcacctcctt ccagagccca agatcaatgc
3481 tcaagttttg gaggacatga tcaccatccc catggtactg atgcttgctg gatttaggga
3541 gggcattttg ctaccaagcc tcttcccaac gccctgggga ccagtcttct gttttgtttt
3601 tcattgtttg acgtttccac tgcatgcctt gacttccccc acctcctcct caaacaagag
3661 actccactgc atgttccaag acagtatggg gtggtaagat aaggaaggga agtgtgtgga
3721 tgtggatggt gggggcatgg acaaagcttg acacatcaag ttatcaaggc cttggaggag
3781 gctctgtatg tcctcagggg actgacaaca tcctccagat tccagccata aaccaataac
3841 taggctggac ccttcccact acataatagg gctcagccca ggcagccagc tttgggctga
3901 gctaacagga ccaatggatt aaactggcat ttcagtccaa ggaagctcga agcaggttta
3961 ggaccaggtc cccttgagag gtcagagggg cctctgtggg tgctgggtac tccagaggtg
4021 ccactggtgg aagggtcagc ggagccccag caggaagggt gggccagcca ggccattctt
4081 agtccctggg ttggggaggc agggagctag ggcagggacc aaatgaacag aaagtctcag
4141 cccaggatgg ggcttcttca acagggcccc tgccctcctg aagcctcagt ccttcacctt
4201 gccaggtgcc gtttctcttc cgtgaaggcc actgcccagg tccccagtgc gccccctagt
4261 ggccatagcc tggttaaagt tccccagtgc ctccttgtgc atagaccttc ttctcccacc
4321 cccttctgcc cctgggtccc cggccatcca gcggggctgc cagagaaccc cagacctgcc
4381 cttacagtag tgtagcgccc cctccctctt tcggctggtg tagaatagcc agtagtgtag
4441 tgcggtgtgc ttttacgtga tggcgggtgg gcagcgggcg gcgggctccg cgcagccgtc
4501 tgtccttgat ctgcccgcgg cggcccgtgt tgtgttttgt gctgtgtcca cgcgctaagg
4561 cgaccccctc ccccgtactg acttctccta taagcgcttc tcttcgcata gtcacgtagc
4621 tcccacccca ccctcttcct gtgtctcacg caagttttat actctaatat ttatatggct
4681 ttttttcttc gacaaaaaaa taataaaacg tttcttctga aaaaaaaaaa aaaaaaaaaa
4741 aaaaaaaaaa aaaaaaaa
//