LOCUS BC146793 7327 bp mRNA linear HUM 12-JUL-2007
DEFINITION Homo sapiens plexin B1, mRNA (cDNA clone MGC:166894 IMAGE:9007264),
complete cds.
ACCESSION BC146793
VERSION BC146793.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 7327)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 7327)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Kazusa DNA Research Inst.
cDNA Library Preparation: Kazusa DNA Research Institute
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCF Plate: 9 Row: h Column: 3.
FEATURES Location/Qualifiers
source 1..7327
/db_xref="H-InvDB:HIT000435585"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:166894 IMAGE:9007264"
/tissue_type="Clones donated by Kazusa DNA Research Inst."
/clone_lib="Kazusa-KIAA-pBluescriptIISK+"
/lab_host="DH5alpha T1-resistant"
/note="Vector: pBluescript II SK+"
gene 1..7327
/gene="PLXNB1"
/gene_synonym="PLEXIN-B1"
/gene_synonym="SEP"
/db_xref="GeneID:5364"
/db_xref="HGNC:HGNC:9103"
/db_xref="MIM:601053"
CDS 272..6679
/gene="PLXNB1"
/gene_synonym="PLEXIN-B1"
/gene_synonym="SEP"
/codon_start=1
/product="plexin B1"
/protein_id="AAI46794.1"
/db_xref="GeneID:5364"
/db_xref="HGNC:HGNC:9103"
/db_xref="MIM:601053"
/translation="MPALGPALLQALWAGWVLTLQPLPPTAFTPNGTYLQHLARDPTS
GTLYLGATNFLFQLSPGLQLEATVSTGPVLDSRDCLPPVMPDECPQAQPTNNPNQLLL
VSPGALVVCGSVHQGVCEQRRLGQLEQLLLRPERPGDTQYVAANDPAVSTVGLVAQGL
AGEPLLFVGRGYTSRGVGGGIPPITTRALWPPDPQAAFSYEETAKLAVGRLSEYSHHF
VSAFARGASAYFLFLRRDLQAQSRAFRAYVSRVCLRDQHYYSYVELPLACEGGRYGLI
QAAAVATSREVAHGEVLFAAFSSAAPPTVGRPPSAAAGASGASALCAFPLDEVDRLAN
RTRDACYTREGRAEDGTEVAYIEYDVNSDCAQLPVDTLDAYPCGSDHTPSPMASRVPL
EATPILEWPGIQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQG
SAVSRDLTFDGTFEHLYVMTQSTLLKVPVASCAQHLDCASCLAHRDPYCGWCVLLGRC
SRRSECSRGQGPEQWLWSFQPELGCLQVAAMSPANISREETREVFLSVPDLPPLWPGE
SYSCHFGEHQSPALLTGSGVMCPSPDPSEAPVLPRGADYVSVSVELRFGAVVIAKTSL
SFYDCVAVTELRPSAQCQACVSSRWGCNWCVWQHLCTHKASCDAGPMVASHQSPLVSP
DPPARGGPSPSPPTAPKALATPAPDTLPVEPGAPSTATASDISPGASPSLLSPWGPWA
GSGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATPEDLLASPLSPSEVA
AVPPADPGPEALHPTVPLDLPPATVPATTFPGAMGSVKPALDWLTREGGELPEADEWT
GGDAPAFSTSTLLSGDGDSAELEGPPAPLILPSSLDYQYDTPGLWELEEATLGASSCP
CVESVQGSTLMPVHVEREIRLLGRNLHLFQDGPGDNECVMELEGLEVVVEARVECEPP
PDTQCHVTCQQHQLSYEALQPELRVGLFLRRAGRLRVDSAEGLHVVLYDCSVGHGDCS
RCQTAMPQYGCVWCEGERPRCVTREACGEAEAVATQCPAPLIHSVEPLTGPVDGGTRV
TIRGSNLGQHVQDVLGMVTVAGVPCAVDAQEYEVSSSLVCITGASGEEVAGATAVEVP
GRGRGVSEHDFAYQDPKVHSIFPARGPRAGGTRLTLNGSKLLTGRLEDIRVVVGDQPC
HLLPEQQSEQLRCETSPRPTPATLPVAVWFGATERRLQRGQFKYTLDPNITSAGPTKS
FLSGGREICVRGQNLDVVQTPRIRVTVVSRMLQPSQGLGRRRRVVPETACSLGPSCSS
QQFEEPCHVNSSQLITCRTPALPGLPEDPWVRVEFILDNLVFDFATLNPTPFSYEADP
TLQPLNPEDPTMPFRHKPGSVFSVEGENLDLAMSKEEVVAMIGDGPCVVKTLTRHHLY
CEPPVEQPLPRHHALREAPDSLPEFTVQMGNLRFSLGHVQYDGESPGAFPVAAQVGLG
VGTSLLALGVIIIVLMYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMT
DLTSDLLGSGIPFLDYKVYAERIFFPGHRESPLHRDLGVPESRRPTVEQGLGQLSNLL
NSKLFLTKFIHTLESQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQYV
AKNPKLMLRRTETVVEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSV
TGKAKYTLNDNRLLREDVEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKM
LDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVP
DGATVALVPCLTKHVLRENQDYVPGERTPMLEDVDEGGIRPWHLVKPSDEPEPPRPRR
GSLRGGERERAKAIPEIYLTRLLSMKGTLQKFVDDLFQVILSTSRPVPLAVKYFFDLL
DEQAQQHGISDQDTIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTF
MDACTLADHKLGRDSPINKLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVLAEL
SWNYSGDLGARVALHELYKYINKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVENKV
TDL"
BASE COUNT 1350 a 2308 c 2244 g 1425 t
ORIGIN
1 ggcccggccg acgcggcttt gtctcctttg ttcccggcgg tggcagcgcc gcgcgggagg
61 ggcgggcagc gggcgcagtt ttccgcccct cggtctccgg gtaacagctg cggctccacc
121 agacccgggg agaggccgct gcgcgcggag cccgagcccg gagcggccga cgcccgcctc
181 ggcgcgcaca tcccgcgggg cccggccggg tggtgactcc cacacgggtc atgctgttgt
241 ctcctgatcc agccggccct gccaggtgac catgcctgct ctgggcccag ctcttctcca
301 ggctctctgg gccgggtggg tcctcaccct ccagcccctt ccaccaactg cattcactcc
361 caatggcacg tatctgcagc acctggcaag ggaccccacc tcaggcaccc tctacctggg
421 ggctaccaac ttcctgttcc agctgagccc tgggctgcag ctggaggcca cagtgtccac
481 cggccctgtg ctagacagca gggactgcct gccacctgtg atgcctgatg agtgccccca
541 ggcccagcct accaacaacc cgaatcagct gctcctggtg agcccagggg ccctggtggt
601 atgcgggagc gtgcaccagg gggtctgtga acagcggcgc ctggggcagc tcgagcagct
661 gctgctgcgg ccagagcggc ctggggacac acaatatgtg gctgccaatg atcctgcggt
721 cagcacggtg gggctggtag cccagggctt ggcaggggag cccctcctgt ttgtggggcg
781 aggatacacc agcaggggtg tggggggtgg cattccaccc atcacaaccc gggccctgtg
841 gccgcccgac ccccaagctg ccttctccta tgaggagaca gccaagctgg cagtgggccg
901 cctctccgag tacagccacc acttcgtgag tgcctttgca cgtggggcca gcgcctactt
961 cctgttcctg cggcgggacc tgcaggctca gtctagagct tttcgtgcct atgtatctcg
1021 agtgtgtctc cgggaccagc actactactc ctatgtggag ttgcctctgg cctgcgaagg
1081 tggccgctac gggctgatcc aggctgcagc tgtggccacg tccagggagg tggcgcatgg
1141 ggaggtgctc tttgcagctt tctcctcggc tgcacccccc actgtgggcc ggcccccatc
1201 ggcggctgct ggggcatctg gagcctctgc cctctgtgcc ttccccctgg atgaggtgga
1261 ccggcttgct aatcgcacgc gagatgcctg ctacacccgg gagggtcgtg ctgaggatgg
1321 gaccgaggtg gcctacatcg agtatgatgt caattctgac tgtgcacagc tgccagtgga
1381 caccctggat gcttatccct gtggctcaga ccacacgccc agccccatgg ccagccgggt
1441 cccgctggaa gccacaccaa ttctggagtg gccagggatt cagctaacag ctgtggcagt
1501 caccatggaa gatggacaca ccatcgcttt cctgggtgat agtcaagggc agctgcacag
1561 ggtctacttg ggcccaggga gcgatggcca cccatactcc acacagagca tccagcaggg
1621 gtctgcagtg agcagagacc tcacctttga tgggaccttt gagcacctgt atgtcatgac
1681 ccagagcaca cttctgaagg ttcctgtggc ttcctgtgct cagcacctgg actgtgcatc
1741 ttgccttgct cacagggacc catactgtgg gtggtgcgtg ctccttggca ggtgcagtcg
1801 ccgttctgag tgctcgaggg gccagggccc agagcagtgg ctatggagct tccagcctga
1861 gctgggctgt ctgcaagtgg cagccatgag tcctgccaac atcagccgag aggagacgag
1921 ggaggttttc ctatcagtgc cagacctgcc acccctgtgg ccaggggagt catattcctg
1981 ccactttggg gaacatcaga gtcctgccct gctgactggt tctggtgtga tgtgcccctc
2041 cccagaccct agtgaggccc cagtgctgcc gagaggagcc gactacgtat ccgtgagcgt
2101 ggagctcaga tttggcgctg ttgtgatcgc caaaacttcc ctctctttct atgactgtgt
2161 ggcggtcact gaactccgcc catctgcgca gtgccaggcc tgtgtgagca gccgctgggg
2221 gtgtaactgg tgtgtctggc agcacctgtg cacccacaag gcctcgtgtg atgctgggcc
2281 catggttgca agccatcaga gcccgcttgt ctccccagac cctcctgcaa gaggtggacc
2341 cagcccctcc ccacccacag cccccaaagc cctggccacc cctgctcctg acacccttcc
2401 cgtggagcct ggggctccct ccacagccac agcttcggac atctcacctg gggctagtcc
2461 ttccctgctc agcccctggg ggccatgggc aggttctggc tccatatctt cccctggctc
2521 cacagggtcg cctctccatg aggagccctc ccctcccagc ccccaaaatg gacctggaac
2581 cgctgtccct gcccccactg acttcagacc ctcagccaca cctgaggacc tcttggcctc
2641 cccgctgtca ccgtcagagg tagcagcagt gccccctgca gaccctggcc ccgaggctct
2701 tcatcccaca gtgcccctgg acctgccccc tgccactgtt cctgccacca ctttcccagg
2761 ggccatgggc tccgtgaagc ccgccctgga ctggctcacg agagaaggcg gcgagctgcc
2821 cgaggcggac gagtggacgg ggggtgacgc acccgccttc tccacttcca ccctcctctc
2881 aggtgatgga gactcagcag agcttgaggg ccctcccgcc cccctcatcc tcccgtccag
2941 cctcgactac cagtatgaca cccccgggct ctgggagctg gaagaggcga ccttgggggc
3001 aagctcctgc ccctgtgtgg agagcgttca gggctccacg ttgatgccgg tccatgtgga
3061 gcgggaaatc cggctgctag gcaggaacct gcaccttttc caggatggcc caggagacaa
3121 tgagtgtgtg atggagctgg agggcctcga ggtggtggtt gaggcccggg tcgagtgtga
3181 gccacctcca gatacccagt gccatgtcac ctgccagcag caccagctca gctatgaggc
3241 tctgcagccg gagctccgtg tggggctgtt tctgcgtcgg gccggccgtc tgcgtgtgga
3301 cagtgctgag gggctgcatg tggtactgta tgactgttcc gtgggacatg gagactgcag
3361 ccgctgccaa actgccatgc cccagtatgg ctgtgtgtgg tgtgaggggg agcgtccacg
3421 ttgtgtgacc cgggaggcct gtggtgaggc tgaggctgtg gccacccagt gcccagcgcc
3481 cctcatccac tcggtggagc cactgactgg gcctgtagac ggaggcaccc gtgtcaccat
3541 caggggctcc aacctgggcc agcatgtgca ggatgtgctg ggcatggtca cggtggctgg
3601 agtgccctgt gctgtggatg cccaggagta cgaggtctcc agcagcctcg tgtgcatcac
3661 cggggccagt ggggaggagg tggccggcgc cacagcggtg gaggtgccgg gaagaggacg
3721 tggtgtctca gaacacgact ttgcctacca ggatccgaag gtccattcca tcttcccggc
3781 ccgcggcccc agagctgggg gcacccgtct caccctgaat ggctccaagc tcctgactgg
3841 gcggctggag gacatccgag tggtggttgg agaccagcct tgtcacttgc tgccggagca
3901 gcagtcagaa caactgcggt gtgagaccag cccacgcccc acgcctgcca cgctccctgt
3961 ggctgtgtgg tttggggcca cggagcggag gcttcaacgc ggacagttca agtatacctt
4021 ggaccccaac atcacctctg ctggccccac caagagcttc ctcagtggag gacgtgagat
4081 atgcgtccgt ggccagaatc tggacgtggt acagacgcca agaatccggg tgaccgtggt
4141 ctcgagaatg ctgcagccca gccaggggct tggacggagg cgtcgcgtgg tcccggagac
4201 ggcatgttcc cttggaccct cctgcagtag ccagcaattt gaggagccgt gccatgtcaa
4261 ctcctcccag ctcatcacgt gccgcacacc tgccctccca ggcctgcctg aggacccctg
4321 ggtccgggtg gaatttatcc ttgacaacct ggtctttgac tttgcaacac tgaaccccac
4381 acctttctcc tatgaggccg accccaccct gcagccactc aaccctgagg accccaccat
4441 gccattccgg cacaagcctg ggagtgtgtt ctccgtggag ggggagaacc tggaccttgc
4501 aatgtccaag gaggaggtgg tggctatgat aggggatggc ccctgtgtgg tgaagacgct
4561 gacgcggcac cacctgtact gcgagccccc cgtggagcag cccctgccac ggcaccatgc
4621 cctccgagag gcacctgact ctttgcctga gttcacggtg cagatgggga acttgcgctt
4681 ctccctgggt cacgtgcagt atgacggcga gagccctggg gcttttcctg tggcagccca
4741 ggtgggcttg ggggtgggca cctctcttct ggctctgggt gtcatcatca ttgtcctcat
4801 gtacaggagg aagagcaagc aggccctgag ggactataag aaggttcaga tccagctgga
4861 gaatctggag agcagtgtgc gggaccgctg caagaaggaa ttcacagacc tcatgactga
4921 gatgaccgat ctcaccagtg acctcctggg cagcggcatc cccttcctcg actacaaggt
4981 gtatgcggag aggatcttct tccctgggca ccgcgagtcg cccttgcacc gggacctggg
5041 tgtgcctgag agcagacggc ccactgtgga gcaagggctg gggcagctct ctaacctgct
5101 caacagcaag ctcttcctca ccaagttcat ccacacgctg gagagccagc gcaccttttc
5161 agctcgggac cgtgcctacg tggcatctct gctcaccgtg gcactgcatg ggaagcttga
5221 gtatttcact gacatcctcc gcactctgct cagtgacctg gttgcccagt atgtggccaa
5281 gaaccccaag ctgatgctgc gcaggacaga gactgtggtg gagaagctgc tcaccaactg
5341 gatgtccatc tgtctgtata ccttcgtgag ggactccgta ggggagcctc tgtacatgct
5401 ctttcgaggg attaagcacc aagtggataa ggggccagtg gacagtgtga caggcaaggc
5461 caaatacacc ttgaacgaca accgcctgct cagagaggat gtggagtacc gtcccctgac
5521 cttgaatgca ctattggctg tggggcctgg ggcaggagag gcccagggcg tgcccgtgaa
5581 ggtcctagac tgtgacacca tctcccaggc aaaggagaag atgctggacc agctttataa
5641 aggagtgcct ctcacccagc ggccagaccc tcgcaccctt gatgttgagt ggcggtctgg
5701 ggtggccggg cacctcattc tttctgacga ggatgtcact tctgaggtcc agggtctgtg
5761 gaggcgcctg aacacactgc agcattacaa ggtcccagat ggagcaactg tggccctcgt
5821 cccctgcctc accaagcatg tgctccggga aaaccaggat tatgtccctg gagagcggac
5881 cccaatgctg gaggatgtag atgagggggg catccggccc tggcacctgg tgaagccaag
5941 tgatgagccg gagccgccca ggcctcggag gggcagcctt cggggcgggg agcgtgagcg
6001 cgccaaggcc atccctgaga tctacctgac ccgcctgctg tccatgaagg gcaccctgca
6061 gaagttcgtg gatgacctgt tccaggtgat tctcagcacc agccgccccg tgccgctcgc
6121 tgtgaagtac ttctttgacc tgctggatga gcaggcccag cagcatggca tctccgacca
6181 ggacaccatc cacatctgga agaccaacag cttgcctctg aggttctgga tcaatataat
6241 aaaaaacccg cagtttgtgt tcgacgtgca aacatctgat aacatggatg cggtgctcct
6301 tgtcattgca cagaccttca tggacgcctg caccctggcc gaccacaagc tgggccggga
6361 ctccccgatc aacaaacttc tgtatgcacg ggacattccc cggtacaagc ggatggtgga
6421 aaggtactat gcagacatca gacagactgt cccagccagc gaccaagaga tgaactctgt
6481 cctggctgaa ctgtcctgga actactccgg agacctcggg gcgcgagtgg ccctgcatga
6541 actctacaag tacatcaaca agtactatga ccagatcatc actgccctgg aggaggatgg
6601 cacggcccag aagatgcagc tgggctatcg gctccagcag attgcagctg ctgtggaaaa
6661 caaggtcaca gatctatagg aacccaggag ccacggcctg ctgttgcttc agcctggcct
6721 gggcagccct ggaagctcgg aggagaggcc accttcttag gtgcctgtag tgactgacaa
6781 gcagagttag tggaaggtga ctcccagtct cctggtggct ctggcctcgg ccctgctgga
6841 tccacctcct agacccgggg cctcaaggct catggggtag tacccagcct gctccccgag
6901 tccagcgacc ctgtgacacc ggtctgcagg gagttgggga ctaagggctt ccagagagtg
6961 gctggaagag actccaggcc cctggggaga ctgtactgtt cctgaacact ggccttggcc
7021 acactgggat tcggagagga aggaggagag ccccatgctt cctgtctgcc tcctccacca
7081 tccctgacct cagttgagct gcctctggcc ttgttgctgc tgccacatcc taggtctaag
7141 agttgaacgc ctctcctagg ccactacaaa ctgacccctc agcagggctg gctgccacag
7201 ggctgccctg cctcataggt agccatggtg agggctatct gctgcagggg ggtcttgggg
7261 agagtggtga ctccattgac ccagcttttc attaaaggat aacacactga aaaaaaaaaa
7321 aaaaaaa
//