LOCUS BC146783 6033 bp mRNA linear HUM 23-JUL-2007
DEFINITION Homo sapiens fibronectin type III domain containing 1, mRNA (cDNA
clone MGC:166869 IMAGE:9007239), complete cds.
ACCESSION BC146783
VERSION BC146783.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6033)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6033)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Kazusa DNA Research Inst.
cDNA Library Preparation: Kazusa DNA Research Institute
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCF Plate: 9 Row: e Column: 6.
FEATURES Location/Qualifiers
source 1..6033
/db_xref="H-InvDB:HIT000435575"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:166869 IMAGE:9007239"
/tissue_type="Clones donated by Kazusa DNA Research Inst."
/clone_lib="Kazusa-KIAA-pBluescriptIISK+"
/lab_host="DH5alpha T1-resistant"
/note="Vector: pBluescript II SK+"
gene 1..6033
/gene="FNDC1"
/gene_synonym="AGS8"
/gene_synonym="bA243O10.1"
/gene_synonym="dJ322A24.1"
/gene_synonym="MEL4B3"
/gene_synonym="RP11-243O10.2"
/db_xref="GeneID:84624"
/db_xref="HGNC:HGNC:21184"
/db_xref="MIM:609991"
CDS 32..5353
/gene="FNDC1"
/gene_synonym="AGS8"
/gene_synonym="bA243O10.1"
/gene_synonym="dJ322A24.1"
/gene_synonym="MEL4B3"
/gene_synonym="RP11-243O10.2"
/codon_start=1
/product="FNDC1 protein"
/protein_id="AAI46784.1"
/db_xref="GeneID:84624"
/db_xref="HGNC:HGNC:21184"
/db_xref="MIM:609991"
/translation="MGLKVTWDPPKDATSRPVEHYNIAYGKSLKSLKYIKVNAETYSF
LIEDVEPGVVYFVLLTAENHSGVSRPVYRAESPPGGEWIEIDGFPIKGPGPFNETVTE
KEVPNKPLRVRVRSSDDRLSVAWKAPRLSGAKSPRRSRGFLLGYGESGRKMNYVPLTR
DERTHEIKKLASESVYVVSLQSMNSQGRSQPVYRAALTKRKISEEDELDVPDDISVRV
MSSQSVLVSWVDPVLEKQKKVVASRQYTVRYREKGELARWDYKQIANRRVLIENLIPD
TVYEFAVRISQGERDGKWSTSVFQRTPESAPTTAPENLNVWPVNGKPTVVAASWDALP
ETEGKVKASKADVQQNTEDNGKPEKPEPSSPSPRAPASSQHPSVPASPQGRNAKDLLL
DLKNKILANGGAPRKPQLRAKKAEELDLQSTEITGEEELGSREDSPMSPSDTQDQKRT
LRPPSRHGHSVVAPGRTAVRARMPALPRREGVDKPGFSLATQPRPGAPPSASASPAHH
ASTQGTSHRPSLPASLNDNDLVDSDEDERAVGSLHPKGAFAQPRPALSPSRQSPSSVL
RDRSSVHPGAKPASPARRTPHSGAAEEDSSASAPPSRLSPPHGGSSRLLPTQPHLSSP
LSKGGKDGEDAPATNSNAPSRSTMSSSVSSHLSSRTQVSEGAEASDGESHGDGDREDG
GRQAEATAQTLRARPASGHFHLLRHKPFAANGRSPSRFSIGRGPRLQPSSSPQSTVPS
RAHPRVPSHSDSHPKLSSGIHGDEEDEKPLPATVVNDHVPSSSRQPISRGWEDLRRSP
QRGASLHRKEPIPENPKSTGADTHPQGKYSSLASKAQDVQQSTDADTEGHSPKAQPGS
TDRHASPARPPAARSQQHPSVPRRMTPGRAPEQQPPPPVATSQHHPGPQSRDAGRSPS
QPRLSLTQAGRPRPTSQGRSHSSSDPYTASSRGMLPTALQNQDEDAQGSYDDDSTEVE
AQDVRAPAHAARAKEAAASLPKHQQVESPTGAGAGGDHRSQRGHAASPARPSRPGGPQ
SRARVPSRAAPGKSEPPSKRPLSSKSQQSVSAEDEEEEDAGFFKGGKEDLLSSSVPKW
PSSSTPRGGKDADGSLAKEEREPAIALAPRGGSLAPVKRPLPPPPGSSPRASHVPSRP
PPRSAATVSPVAGTHPWPRYTTRAPPGHFSTTPMLSLRQRMMHARFRNPLSRQPARPS
YRQGYNGRPNVEGKVLPGSNGKPNGQRIINGPQGTKWVVDLDRGLVLNAEGRYLQDSH
GNPLRIKLGGDGRTIVDLEGTPVVSPDGLPLFGQGRHGTPLANAQDKPILSLGGKPLV
GLEVIKKTTHPPTTTMQPTTTTTPLPTTTTPRPTTATTRRTTTRRPTTTVRTTTRTTT
TTTPKPTTPIPTCPPGTLERHDDDGNLIMSSNGIPECYAEEDEFSGLETDTAVPTEEA
YVIYDEDYEFETSRPPTTTEPSTTATTPRVIPEEGAISSFPEEEFDLAGRKRFVAPYV
TYLNKDPSAPCSLTDALDHFQVDSLDEIIPNDLKKSDLPPQHAPRNITVVAVEGCHSF
VIVDWDKATPGDVVTGYLVYSASYEDFIRNKWSTQASSVTHLPIENLKPNTRYYFKVQ
AQNPHGYGPISPSVSFVTESDNPLLVVRPPGGEPIWIPFAFKHDPSYTDCHGRQYVKR
TWYRKFVGVVLCNSLRYKIYLSDNLKDTFYSIGDSWGRGEDHCQFVDSHLDGRTGPQS
YVEALPTIQGYYRQYRQEPVRFGNIGFGTPYYYVGWYECGVSIPGKW"
BASE COUNT 1459 a 1851 c 1535 g 1188 t
ORIGIN
1 gccaaggcat gtgaaactgc tgtccactaa aatgggcctg aaagtcacgt gggacccacc
61 caaagatgct accagtagac ctgtggagca ttacaacatt gcctatggga agtcactgaa
121 aagtcttaaa tacatcaagg tgaatgcgga gacatactcc ttccttattg aggatgtgga
181 gccgggggta gtgtactttg tgctgcttac tgcagaaaac cacagtggag tgagccgtcc
241 tgtttacaga gctgaaagcc cacctggagg tgaatggatc gagattgatg gttttcccat
301 taagggtcca ggaccattta atgaaaccgt cacagaaaag gaagtgccca acaagccctt
361 gcgtgtgcgt gtccggtcct cagatgacag gctgtccgtt gcgtggaagg caccacgcct
421 gtctggagcc aagagtccac gcagatcacg gggttttctc ctgggctacg gggagagtgg
481 ccggaagatg aattatgttc cactgacaag agatgaacgg acacacgaaa ttaaaaagct
541 agcctcggaa tccgtgtatg tggtctccct gcagtccatg aactctcagg gccggagcca
601 accagtctac agggctgccc taacaaagcg aaagatttca gaagaggacg aattggatgt
661 acctgacgac atcagcgtcc gggttatgtc atctcagtct gtgcttgtgt cctgggtgga
721 tcctgttctg gaaaaacaga agaaagttgt tgcatcaaga cagtacaccg tgcgctatcg
781 agagaagggg gaattggcca ggtgggatta taagcagatc gctaacaggc gtgtgctgat
841 tgagaacctg attccagaca ctgtgtatga atttgcagtc cgtatttcac agggtgaaag
901 agatggcaaa tggagtacgt cagtcttcca aagaacacca gaatctgccc ctaccacagc
961 tcctgaaaac ttgaacgtct ggccagtcaa tggcaaacct acagttgtcg ctgcatcttg
1021 ggatgcgcta ccagagactg aggggaaagt gaaagccagt aaggcggatg ttcagcagaa
1081 cacggaggac aatgggaaac ccgaaaaacc tgagccttcc tcaccttctc ccagagctcc
1141 agcttcctcc caacacccct ctgtgcctgc ttctccccaa gggagaaatg ccaaggacct
1201 tcttcttgac ttgaagaaca aaatattggc taatggtggg gcgccccgaa aaccccagct
1261 tcgcgccaag aaggcagagg agctggatct tcagtcgaca gaaatcactg gggaggagga
1321 gctgggttcc cgggaggact cgcccatgtc accctcagac acccaagacc agaaacggac
1381 cctgaggccg ccaagtagac acggccactc ggtggttgct cccggcagga ctgcagtgag
1441 ggcccggatg ccagcgctgc cccgaaggga aggcgtagat aagcctggct tttccctggc
1501 cacgcagccc cgcccagggg cgcccccctc ggcttcggcc tctcctgccc accacgcgtc
1561 cacccagggc acctctcatc gtccttccct gcctgccagc ttgaatgaca acgacttggt
1621 ggactcagac gaagatgagc gcgctgtggg ctccctccac cccaagggcg ccttcgccca
1681 gccccggcca gccctgtccc ccagccgcca gtccccgtcc agcgttctcc gcgacagaag
1741 ctctgtgcac cccggcgcaa agccagcctc gccggcccgg aggacccccc attcaggggc
1801 cgcagaggaa gattccagtg cctcagcccc accctcaaga ctttctccac cccatggggg
1861 atcatctcgg ctgctgccca cccagccaca cctgagctct ccactttcca agggcgggaa
1921 ggatggtgag gacgccccag ccaccaactc caatgcgcca tcacggtcca ccatgtcctc
1981 ctccgtctct tctcatctct cgtccaggac gcaggtctct gagggagcgg aggcttctga
2041 tggtgaaagc cacggtgacg gcgataggga agacggcgga aggcaggcgg aggccacggc
2101 ccagacgctg cgggcccggc ctgcctctgg acacttccat ttgctcagac acaaaccctt
2161 tgctgccaac gggaggtctc caagcaggtt cagcattggg cggggacctc ggctgcagcc
2221 ctccagctcc ccacagtcga ctgtgccctc ccgagcccac cccagggttc cctctcactc
2281 tgattcccac cctaagctta gctcaggtat ccatggagac gaggaggatg agaagccgct
2341 tcctgccacc gttgtcaatg accacgtgcc ttcctcctcc aggcagccca tctcccgggg
2401 ctgggaggac ttaaggagaa gcccgcagag aggggccagc ctgcatcgga aggaacccat
2461 cccagagaac cccaaatcca caggggcaga tacacatcct cagggcaagt actcctccct
2521 ggcctccaag gctcaggatg ttcaacagag cacagacgcg gacacggagg gtcattctcc
2581 caaagcacag ccagggtcca cagaccgcca cgcgtcccct gctcgtcctc ccgcagcacg
2641 gtcacagcag catcccagtg ttcccagaag gatgacaccc ggccgggccc cagaacagca
2701 gccccctcct cccgtcgcca cgtcccagca ccacccggga ccccagagca gagacgcggg
2761 tcggtcacct tcccagccca ggctctcact gacccaggcc gggcggcccc gccccacgtc
2821 gcagggccgc tcccactcct cctcggaccc ttacacggcg agctccagag ggatgctccc
2881 cacggccctc cagaaccagg acgaggatgc ccagggcagc tacgacgacg acagcacaga
2941 agtcgaggcc caggatgtgc gggcccccgc acacgccgcg cgcgccaagg aggcagctgc
3001 gtcccttccc aagcaccagc aggtggagtc tcccacaggc gcaggggcag gtggtgacca
3061 caggtcccag cgcggacatg cggcctcccc cgccaggccc agccgacccg gcggccccca
3121 gtcccgcgcc cgggtcccca gcagggcagc gccggggaag tcggagcctc cttccaagcg
3181 gcccctgtcc tccaagtccc agcagtcggt ctcagccgag gacgaggagg aggaggacgc
3241 ggggtttttt aaaggcggga aagaagacct tctgtcttcc tctgtgccaa agtggccctc
3301 ttcctccact cccaggggcg gcaaagacgc cgatgggagc ctcgccaagg aagagaggga
3361 gcctgccatc gcgcttgccc ctcgcggagg gagcctggct cctgtgaagc gacctctccc
3421 cccacctcca ggcagctccc ccagggcctc ccacgtccct tcccgaccgc cgcctcgcag
3481 cgctgccacc gtgagccccg tcgcgggcac ccacccctgg ccgcggtaca ccacgcgcgc
3541 cccgcctggc cacttctcca ccaccccgat gctgtccttg cgccagagga tgatgcatgc
3601 cagattccgt aaccctctct cccgacagcc tgccagaccc tcttacagac aaggttataa
3661 tggcagacca aatgtagaag ggaaagtcct tcctggtagt aatggaaaac cgaatggaca
3721 gagaattatc aatggccctc aaggaacaaa gtgggttgtg gaccttgatc gtgggttagt
3781 attgaatgca gaaggaaggt acctccaaga ttcacatgga aatcctcttc ggattaaact
3841 aggaggagat ggtcgaacca ttgtagatct ggaagggacc cccgtggtga gtcctgacgg
3901 cctcccactc tttgggcagg ggcgacatgg cacacctctg gccaatgccc aagataagcc
3961 aattttgagt cttggaggaa agccgctggt gggtttggag gtcatcaaaa aaaccaccca
4021 tccccctacc actaccatgc agcccaccac tactacgacg cccctgccta ccactacaac
4081 cccgaggccc accactgcca ccacccgccg cacgaccacc aggcgtccaa caaccacagt
4141 ccgaaccact acgcggacaa ccaccaccac cacccccaaa cccaccactc ccatccccac
4201 ctgtccccct gggaccttgg aacggcacga cgatgatggc aacctgataa tgagctccaa
4261 tgggatccca gagtgctacg ctgaagaaga tgagttctca ggcttggaga ctgacactgc
4321 agtacctacg gaagaggcct acgttatata tgatgaagat tatgaatttg agacgtcaag
4381 gccaccaacc accactgagc cttcgaccac tgctaccaca ccgagggtga tcccagagga
4441 aggcgccatc agttcctttc ctgaagaaga atttgatctg gctggaagga aacgatttgt
4501 tgctccttac gtgacgtacc taaataaaga cccatcagcc ccgtgctctc tgactgatgc
4561 actggatcac ttccaagtgg acagcctcga tgaaatcatc cccaatgacc tgaagaagag
4621 tgacctgcct ccccagcatg ctccccgcaa catcaccgtg gtggccgtgg aaggttgcca
4681 ctcatttgtc attgtggact gggacaaagc taccccagga gatgtggtca caggttactt
4741 ggtttacagt gcatcctatg aagacttcat caggaacaag tggtccactc aagcttcatc
4801 agtaactcac ttgcccattg agaacctaaa gcccaacacg aggtattatt ttaaagtgca
4861 agcacaaaat cctcatggct acggacctat cagcccttcg gtctcatttg tcaccgaatc
4921 agataatcct ctgcttgttg tgaggccccc aggcggtgag cctatctgga tcccattcgc
4981 tttcaaacat gatcccagct acacggactg ccatggacgg caatatgtga agcgcacgtg
5041 gtatcgaaag ttcgtgggag ttgttctttg taattcactg aggtataaaa tctacctcag
5101 tgacaacctg aaagatacat tctacagcat tggagacagc tggggaagag gtgaagacca
5161 ttgccaattt gtggattcac accttgatgg aagaacaggg cctcagtcct atgtagaagc
5221 cctccctact attcaaggct actatcgcca gtatcgtcag gagcctgtca ggtttgggaa
5281 catcggcttc ggaaccccct actactatgt gggctggtac gagtgtgggg tctccatccc
5341 tggaaagtgg taatcacagg accgtcatgc tgcaagcttg ccctgcccag ccccaccaac
5401 taagtcgcac taggggctgt gagcaaagac agccagcgtg ctcagccccg ctgccctagg
5461 tgccaggaag gtcacagatg gacactggcc attctggtca tctcagtctg gaactcagtc
5521 ccacttcttg gcctggacaa tgaacaggat tcagttttgc tgttaacttt gcttctctac
5581 ttttttttgt ttgtttgtaa tagcacatcc cagagacatc agaaaccagc aactgattca
5641 gtgtgatttc cagacttttt aggcatgaaa ttcggacact tcagtatttc caggaatagc
5701 atatgcacgc tgttcttgct tcatggaatg ctacatgctt tctgtttttc tcattttgga
5761 tttctccaaa actaactgaa tttaagcttc aggtcccttt gtatgcagta gaaaggaatt
5821 attaaaaaca ccaccaaaga aaataaatat atcctacttg aaatttactc tatggactta
5881 cccactgcta gaataaatgt atcaaatctt atttgtaaat tctcaatttt gatatatata
5941 tgtatatatg catatacata tccacacttg tctgcaagaa tattgattaa aattgctaaa
6001 tttgtacttg ttcaccaaaa aaaaaaaaaa aaa
//