LOCUS BC146778 5856 bp mRNA linear HUM 12-JUL-2007
DEFINITION Homo sapiens PCF11, cleavage and polyadenylation factor subunit,
homolog (S. cerevisiae), mRNA (cDNA clone MGC:166858
IMAGE:9007228), complete cds.
ACCESSION BC146778
VERSION BC146778.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5856)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5856)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Kazusa DNA Research Inst.
cDNA Library Preparation: Kazusa DNA Research Institute
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCF Plate: 9 Row: e Column: 12.
FEATURES Location/Qualifiers
source 1..5856
/db_xref="H-InvDB:HIT000435570"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:166858 IMAGE:9007228"
/tissue_type="Clones donated by Kazusa DNA Research Inst."
/clone_lib="Kazusa-KIAA-pBluescriptIISK+"
/lab_host="DH5alpha T1-resistant"
/note="Vector: pBluescript II SK+"
gene 1..5856
/gene="PCF11"
/db_xref="GeneID:51585"
/db_xref="HGNC:HGNC:30097"
/db_xref="MIM:608876"
CDS 270..4937
/gene="PCF11"
/codon_start=1
/product="PCF11, cleavage and polyadenylation factor
subunit, homolog (S. cerevisiae)"
/protein_id="AAI46779.1"
/db_xref="GeneID:51585"
/db_xref="HGNC:HGNC:30097"
/db_xref="MIM:608876"
/translation="MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILA
EENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFIC
VFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIH
VNPKFLNKSPEEPSTPGTVVSSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLEL
QQKKLELELEQAKAQLAVSLSVQQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQS
EKSRPGPSLQIQDLKGTNRDPRLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIP
SEKLNSSKQEKSKSGEKITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESM
RLSDMNKRDPRLKKHLQDKTDGKDDDVKEKRKTAEKKDKDEHMKSSEHRLAGSRNKII
NGIVQKQDTITEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQR
SMSPTSTPKAGKIRQSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEERP
QETTNQHSTKSGTEPKENVENWQSSKSAKRWKSGWEENKSLQQVDEHSKPPHLRHRES
WSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDDF
LVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQ
RLTALAEDRPLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQM
GGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRF
EGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGG
LRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQ
HNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPR
FEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFD
GVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAP
SQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGNFG
NIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYPDN
HLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTN
FTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRK
VTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGP
AGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSP
SKTPVENPLNIMLNIVKNELQEPCDSPKVKEERIDTPPACTEESIATPSEIKTENDTV
ESV"
BASE COUNT 1884 a 1134 c 1344 g 1494 t
ORIGIN
1 ggagccgcca ctgccgccgc cattttgtgt ctgtggagaa agaagcttct gtggcggctg
61 gaagtggacg gagatcaccc gcgagacggc ggcgtttcat acccgaggtt ccccctgtgt
121 cgtcccccat cccccctccg cggtcagcat gtggtgaagc cggagccgcg agagagccgg
181 ggagaggaag aggagtcgga agggaggcgg ggtatccaga gcggcttcag cttcagctgc
241 agcggacctc ggaggggggc cgcggcgcaa tgtcagagca gacgccggcc gaggccggtg
301 ctgcgggggc ccgggaggac gcctgtcggg attatcagtc atcgctcgaa gacctgacct
361 tcaatagcaa gccgcacatc aatatgctga ccattctagc cgaggagaac ctgcccttcg
421 ccaaggagat cgtctctctc atcgaggccc aaaccgccaa ggctccttcc tcagagaagc
481 ttcctgttat gtaccttatg gattctattg tgaaaaacgt tggaagagag tatctcactg
541 cctttactaa aaatctagtt gcaacattta tttgtgtgtt tgaaaaggtg gatgaaaata
601 ctaggaaaag tttatttaag ttacgttcta catgggatga aatattccct ttgaagaaac
661 tttatgccct ggatgtcaga gtcaattcat tagatcctgc ttggcctatt aaacctctac
721 cccccaatgt gaatacgtct agcatccatg tgaatcctaa atttttaaat aaatcgcccg
781 aggagccttc aacacctggt acagtggtca gttcccctag catctccact cctccaattg
841 ttcctgatat acaaaagaat cttacacaag aacaactaat aaggcagcag ttactggcaa
901 agcaaaaaca gttgttagaa cttcagcaga aaaagctgga gcttgagcta gagcaagcta
961 aggcacagtt ggcagtttct cttagtgttc agcaggaaac atccaattta ggtcctggat
1021 ctgcaccatc caaattacat gtttcacaga ttccccctat ggcagttaaa gctcctcatc
1081 aggttcctgt gcaatctgag aaaagccgtc caggaccatc cttacaaatt caggatttaa
1141 aaggaactaa ccgggatcct cgtctgaaca ggataagcca acattctcat ggaaaagatc
1201 agagtcacag gaaagaattt ctaatgaaca cattaaacca gtctgatact aagacaagta
1261 aaactatacc ctctgaaaaa ctaaattcat ccaagcaaga aaaaagtaaa tcaggtgaaa
1321 aaataaccaa gaaagaactt gaccaattag attctaaatc gaaatcgaaa tcgaaatcac
1381 cctcaccttt gaaaaacaaa ttatctcaca caaaagactt gaaaaatcaa gaatcggaaa
1441 gtatgaggtt gtctgatatg aacaagagag atccaagatt aaaaaaacat cttcaggata
1501 agaccgatgg caaagatgat gatgtgaaag agaagagaaa aactgcagaa aaaaaggata
1561 aagatgagca catgaagtca tccgaacaca gactggctgg aagtagaaat aaaatcataa
1621 atggcattgt acaaaaacag gatacaataa cagaagagtc agaaaaacag gggacaaaac
1681 cagggagatc gagtactaga aagcgatcaa gatctcgatc acccaagtct aggtcaccaa
1741 ttatacattc cccaaagaga agagataggc ggtcacccaa acgaaggcaa agaagtatgt
1801 ctccaacatc gacacctaaa gctggaaaga ttcgccaatc tggagctaag cagtcacata
1861 tggaagagtt tacaccacct tctagggaag acagaaatgc taagagaagt actaaacagg
1921 atattcggga tccaaggcga atgaaaaaga ctgaagagga gcgaccacaa gaaactacaa
1981 atcagcattc tacaaagtca ggcactgaac caaaggagaa tgtagaaaac tggcaaagtt
2041 ccaagtctgc caaaagatgg aaatctggtt gggaagaaaa taaaagctta caacaggttg
2101 atgaacatag taaacctcct catctgaggc atagggagag ctggtcaagc actaaaggaa
2161 ttttatcacc tcgagcccca aagcagcaac agcatcgatt aagtgtagat gccaatcttc
2221 agattcctaa agagttaact cttgcaagca aaagagaatt acttcaaaag acgagtgaac
2281 gtttagcatc tggtgaaatt acacaggatg acttccttgt tgttgtgcat caaattcgac
2341 agctatttca gtatcaagaa ggtgtgcgag aagagcagag atctccattc aatgatcgtt
2401 ttccacttaa gcgacctcga tatgaagatt cagataaacc atttgtagat agtccagcat
2461 caagattcgc cggcctggat acaaatcagc gacttacagc tttagctgaa gacagaccgt
2521 tatttgatgg acctagtagg ccatcagtag caagagatgg cccaacgaag atgatttttg
2581 aaggacccaa taaattaagc cctcgaattg atggacctcc cacaccagct tctcttcggt
2641 ttgatgggtc accaggacaa atggggggag gaggcccttt gagatttgag gggccacaag
2701 gtcagctagg aggtgggtgt cctttgagat ttgaaggtcc tccaggacca gtggggacac
2761 ctctgcggtt tgagggccca attggtcaag caggaggagg tggttttcgg tttgaaggtt
2821 cccctggtct gaggtttgag ggatctccag gtggtttgag atttgaggga ccaggaggcc
2881 agcctgtggg tggtctgagg tttgagggac atcgtggtca acctgtgggt ggtctaaggt
2941 ttgagggacc tcatggtcag cctgtgggtg gacttagatt tgataatccc cgaggtcagc
3001 ctgtaggtgg acttagattt gaggggggtc atggtccatc aggggctgcg attaggtttg
3061 atggacctca tggtcagcca ggaggtggaa tcagatttga gggccctttg ctacagcaag
3121 gggttggaat gaggtttgag ggcccccatg gtcagtcagt agctggtctg agatttgagg
3181 gacaacataa tcaacttggt gggaacctta ggtttgaggg tccacatggt cagccagggg
3241 ttggtatcag gtttgaaggc cctttagtcc aacaaggagg tggaatgagg tttgagggtc
3301 cttctgtacc aggaggtggc ctgagaattg aagggcctct gggtcaaggt ggtccaagat
3361 ttgaaggttg tcatgcttta aggtttgatg ggcagccagg tcagccgtca ctcttgccaa
3421 gatttgatgg attacatggt cagccaggtc ctagatttga aaggactcct ggtcagccag
3481 gccctcagag gtttgatgga ccacctggac agcaggttca acccagattt gacggtgtac
3541 ctcaaagatt tgatggtcca caacatcagc aagcatcaag gtttgatatt cctcttggtc
3601 ttcaaggcac aagatttgac aatcatcctt cacaaaggct tgaatcagta tctttcaatc
3661 agactggtcc atataatgat ccacctggca atgcttttaa tgccccatcc caaggactac
3721 agttccaaag acatgaacaa atatttgatt cacctcaagg accaaatttt aatggaccac
3781 atggccctgg aaaccagagt ttctctaatc cacttaacag agcttctgga cactattttg
3841 atgaaaaaaa tcttcagagt tctcaatttg gaaactttgg caatatacct gctccaatga
3901 cagtaggaaa tattcaggca tctcaacagg ttctgagtgg tgttgctcag ccagtagctt
3961 ttggtcaagg acaacagttt ttaccagttc atccacaaaa tcctggattt gttcagaatc
4021 cttcaggagc cctccctaag gcatatcctg ataatcatct cagtcaggtg gatgtaaatg
4081 aattgttttc aaaattgcta aaaacaggaa ttctcaaatt gtcccaaact gattcagcta
4141 caacacaagt aagtgaagta actgctcagc ctccccctga agaggaggaa gatcaaaatg
4201 aagatcaaga tgttccagat cttactaatt ttacagttga agaattgaaa caacgttatg
4261 acagtgttat aaatcgactg tacactggta ttcagtgtta ctcttgtgga atgaggttta
4321 caacatcaca gacagatgtt tatgcagatc atttggactg gcattatcgg caaaatagaa
4381 ctgaaaagga tgttagccga aaagtcactc atagacgttg gtactacagt ttaacagact
4441 ggatagaatt tgaggagata gctgatctgg aagaacgggc aaagagccag ttttttgaaa
4501 aggtgcatga agaagttgtg ctcaaaactc aagaggctgc taaagaaaaa gagttccaaa
4561 gtgtacctgc tggaccagct ggagcagttg agagttgtga aatctgtcaa gaacaatttg
4621 aacaatactg ggatgaagaa gaggaggaat ggcatttgaa aaatgctatt agagtagatg
4681 gaaagattta tcatccatca tgttatgaag attatcaaaa tacatcttca tttgattgta
4741 caccatctcc cagcaagaca ccagttgaaa accccttgaa tattatgttg aacattgtca
4801 aaaacgaatt gcaggaaccc tgtgacagtc ccaaagttaa ggaagaacga attgatacac
4861 caccagcttg tacagaggaa agcatagcaa caccctctga aattaaaaca gaaaatgaca
4921 cagtcgagtc agtttaaata aaatgagaaa ggtatgtttt tcttttttaa aaaagctgct
4981 gttggatcta gaaggtgaag aattttttta tgtatatata gacatatcta tataaattgt
5041 ctggctgagg cagggccttc agctatcatt tggttaataa atacatttta gtatttgcat
5101 ttcctactgc ctgcagagtt tcaggtgctt gttgtgtgaa agttctgtag atgtgtgcaa
5161 atttaacgaa atgaaattgt atgtgtaaaa atgtacgatt tttcactgtg caactgtaaa
5221 ttataaataa aaaatatttt tgctattcat ggagtgtaat atttatgcac accatcaaat
5281 agtttctgta ctttttattg ggtaaaaatg gaattgaaca gcaacctcaa cataagattt
5341 tttttctagt agcctcccac tgattaaaga agcaagtttg aggtttcatc cttcaaaagg
5401 gggttccgag agagcaccgt agggcttttc tcaaatagaa aagccagatt ttgaaaaaat
5461 tttaaagata aaataggaca tattttgcag atatatatat atatatacac aaacacatct
5521 ccaggtatag agaaccatcc agatgttcac ttttgaaaat atctaatgat gcaaagtttt
5581 attcttgaac ttggacactg atgccatcaa acaattaaca aatatattta agtactaaag
5641 gtgatttttt ttttaaagac tttttcaaat tgtcaaatga tttaatgcag atgaacatat
5701 ttctatttta agtaacggga atctgtaaga atgtttgctt gagatatggt taactttttt
5761 cttttgttgg ttttgactta gatggacacc atgagatgtt aatattcata catgtaataa
5821 atagaatgat gaagaaaaaa aaaaaaaaaa aaaaaa
//