LOCUS BC146771 5539 bp mRNA linear HUM 22-AUG-2008
DEFINITION Homo sapiens PHD and ring finger domains 1, mRNA (cDNA clone
MGC:166848 IMAGE:9007218), complete cds.
ACCESSION BC146771
VERSION BC146771.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5539)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5539)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Kazusa DNA Research Inst.
cDNA Library Preparation: Kazusa DNA Research Institute
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCF Plate: 9 Row: b Column: 12.
FEATURES Location/Qualifiers
source 1..5539
/db_xref="H-InvDB:HIT000435563"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:166848 IMAGE:9007218"
/tissue_type="Clones donated by Kazusa DNA Research Inst."
/clone_lib="Kazusa-KIAA-pBluescriptIISK+"
/lab_host="DH5alpha T1-resistant"
/note="Vector: pBluescript II SK+"
gene 1..5539
/gene="PHRF1"
/db_xref="GeneID:57661"
/db_xref="HGNC:HGNC:24351"
/db_xref="MIM:611780"
CDS 129..5078
/gene="PHRF1"
/codon_start=1
/product="PHD and ring finger domains 1"
/protein_id="AAI46772.1"
/db_xref="GeneID:57661"
/db_xref="HGNC:HGNC:24351"
/db_xref="MIM:611780"
/translation="MDDDSLDELVARSPGPDGHPQVGPADPAGDFEESSVGSSGDSGD
DSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSEDDGETLLEVAGTQGKLEAAGSFNSD
DDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPVDRTLFKCICIRAQ
FGGKILKKIPVENTKASEEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQ
EVPVDEWFCPECAAPGVVLAADAGPVSEEEVSLLLADVVPTTSRLRPRAGRTRAIART
RQSERVRATVNRNRISTARRVQHTPGRLGSSLLDEAIEAVATGLSTAVYQRPLTPRTP
ARRKRKTRRRKKVPGRKKTPSGPSAKSKSSATRSKKRQHRVKKRRGKKVKSEATTRSR
IARTLGLRRPVHSSCIPSVLKPVEPSLGLLRADIGAASLSLFGDPYELDPFDSSEELS
ANPLSPLSAKRRALSRSALQSHQPVARPVSVGLSRRRLPAAVPEPDLEEEPVPDLLGS
ILSGQSLLMLGSSDVIIHRDGSLSAKRAAPVSFQRNSGSLSRGEEGFKGCLQPRALPS
GSPAQGPSGNRPQSTGLSCQGRSRTPARTAGAPVRLDLPAAPGAVQARNLSNGSVPGF
RQSHSPWFNGTNKHTLPLASAASKISSRDSKPPCRSVVPGPPLKPAPRRTDISELPRI
PKIRRDDGGGRRDAAPAHGQSIEIPSACISRLTGREGTGQPGRGTRAESEASSRVPRE
PGVHTGSSRPPAPSSHGSLAPLGPSRGKGVGSTFESFRINIPGNMAHSSQLSSPGFCN
TFRPVDDKEQRKENPSPLFSIKKTKQLRSEVYDPSDPTGSDSSAPGSSPERSGPGLLP
SEITRTISINSPKAQTVQAVRCVTSYTVESIFGTEPEPPLGPSSAMSKLRGAVAAEGA
SDTEREEPTESQGLAARLRRPSPPEPWDEEDGASCSTFFGSEERTVTCVTVVEPEAPP
SPDVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRKRVSREHGRTRSGTRSESRDRSS
RSASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKDKSREHRRGPWGHSRRT
SRSRSGSPGSSSYEHYESRKKKKRRSASRPRGRECSPTSSLERLCRHKHQRERSHERP
DRKESVAWPRDRRKRRSRSPSSEHRAREHRRPRSREKWPQTRSHSPERKGAVREASPA
PLAQGEPGREDLPTRLPALGEAHVSPEVATADKAPLQAPPVLEVAAECEPDDLDLDYG
DSVEAGHVFDDFSSDAVFIQLDDMSSPPSPESTDSSPERDFPLKPALPPASLAVAAIQ
REVSLMHDEDPSQPPPLPEGTQEPHLLRPDAAEKAEAPSSPDVAPAGKEDSPSASGRV
QEAARPEEVVSQTPLLRSRALVKRVTWNLQESESSAPAEDRAPRAPLHRPQKPREGAW
DMEDVAPTGVRQAFSELPFPSHVLPEPGFPDTDPSQVYSPGLPPAPAQPSSIPPCALV
SQPTVQFILQGSLPLVGCGAAQTLAPVPAALTPASEPASQATAASNSEEKTPAPRLAA
EKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGE
INPVKVANLVKAYVDKYRHMRRHKKPEAGEEPPTQGAEG"
BASE COUNT 1183 a 1676 c 1818 g 862 t
ORIGIN
1 gagcgcacgg cggcggcaga ggcggcggcg gccgggccta ggagcgactc tcggtcgtgc
61 agcggcggcg agcgctcgcg agcggctgcg ggacgcgagg tttccggagc tgagctcaat
121 gtgcagcaat ggatgacgac agcctggatg agcttgtggc ccggagccca gggccggatg
181 gacacccaca ggtcggccct gcggacccgg caggtgactt tgaagaaagc agcgtgggca
241 gcagtgggga ctctggggac gacagtgaca gcgagcatgg agatggcaca gacggagaag
301 acgagggggc gtctgaggag gaagacctgg aagacagatc tggttccgag gattctgaag
361 acgacgggga gacattgctg gaggtagcgg gtactcaggg gaaactggaa gccgctggct
421 ctttcaattc tgatgatgat gcagagagct gcccaatctg tctcaacgca ttcagagacc
481 aggccgtggg gacgccggag aactgtgccc attacttctg cctggactgc attgtcgaat
541 ggtccaagaa tgccaattcc tgtccagttg atcgaactct atttaagtgc atttgtattc
601 gagctcaatt tggtggtaaa atcttaaaaa agatcccagt ggagaacacc aaagcgagcg
661 aggaggagga ggacccgacc ttctgtgagg tgtgcggcag gagcgaccgt gaggacaggc
721 ttttgctctg cgacggctgc gatgcggggt accacatgga atgcttggac ccccctctcc
781 aggaggtgcc ggtggacgag tggttctgcc cggaatgtgc tgcgcctggt gttgtccttg
841 ccgctgatgc gggtcccgtg agtgaggagg aggtctccct gctcttggct gatgtggtgc
901 ccaccaccag caggcttcgg cctcgagcag gtaggacccg ggcgatagcc aggacacggc
961 agagtgagag agtgagagca accgtgaacc ggaaccggat ctccacggcc aggagggtcc
1021 agcacacacc agggcgcctc gggtcttccc tgctggatga agccatcgag gctgtggcga
1081 ctggcctgag cactgccgtg tatcagcgcc ccctgacgcc gcgcactccc gcccgacgga
1141 agaggaagac aagaagacgg aagaaagtgc cgggaagaaa gaaaaccccg tccggaccat
1201 ccgcaaaaag taagagctca gcgacaagat ctaagaaacg ccaacatcga gtgaagaaga
1261 gaagagggaa gaaggtaaag agtgaagcca ccactcgctc tcgaatcgcg cggacgctgg
1321 gcctgcgcag gcctgttcac agcagctgca tcccgtcagt gttgaagcca gtggagccct
1381 ctttggggct gctgagagcg gatattggag ctgcctctct gtctctgttt ggagatcctt
1441 atgagctgga tcccttcgac agcagtgaag agctttctgc aaaccctctt tcccctctga
1501 gtgccaagag acgggctctg tcccggtcag ccctgcagtc ccaccagccc gtggccaggc
1561 ccgtctccgt ggggctttcc aggaggcgcc tccctgccgc ggtgccagag ccagacttgg
1621 aggaggagcc agtgcctgac ctgctgggca gcatcctgtc gggccagagc ctcctgatgc
1681 tgggcagcag tgatgtcatc atccaccgcg acggctccct cagcgccaag agggcggctc
1741 cagtttcttt tcagcgaaac tcaggcagtc tgtccagagg ggaagaagga ttcaagggct
1801 gcctgcagcc ccgagcactg ccctccggga gcccggccca aggcccgtca ggaaacaggc
1861 cacagagcac agggctcagc tgtcaaggca ggtcccgcac ccccgcccgc accgcggggg
1921 cgcctgtgag gctggacttg ccagcagccc ctggggcggt tcaggctcgg aacttgtcaa
1981 atgggagtgt gcctggcttc agacagagcc acagcccctg gttcaacggc accaacaagc
2041 acaccttgcc ccttgcctct gccgcgtcta agatctcaag cagagattct aagcccccat
2101 gtcgcagtgt ggtgccgggg cctcccctga agccagcgcc cagaagaaca gacatctctg
2161 agctacccag gataccaaag atcaggagag atgacggtgg tggcagacgg gatgcggccc
2221 cggcccacgg gcagagcatt gagatcccca gtgcctgcat cagccgactg actggcaggg
2281 agggcaccgg gcagccaggg cgaggcacac gggcagagag cgaggccagc agcagggtgc
2341 cccgggagcc cggggtgcac acgggcagct cccggccccc agcccccagc tcccatggca
2401 gtttggcccc actgggacca tcaagaggga aaggggtcgg gtcgaccttt gagagcttcc
2461 ggatcaatat tcctggaaac atggcacatt ccagccagct ctccagccct ggcttctgta
2521 acacgttccg gcctgtggac gataaggagc agaggaagga gaacccctca cccctcttct
2581 ccatcaagaa gacgaagcag ctgcggagcg aggtctacga cccatccgac cccaccggct
2641 ccgactccag cgcccctggc agcagccccg agaggtctgg ccccggcctc ctgccctctg
2701 agatcacacg aaccatctcc atcaacagcc cgaaggccca gacggtgcag gctgtgcgct
2761 gcgtcacctc ctacacggtg gagagcatct ttggtacaga gcccgaaccc cctctcggac
2821 cgtcctccgc catgtccaag ctccggggtg cagtggctgc cgagggggcc tctgacacgg
2881 agcgagagga gcccacagag agccagggcc tggctgcccg gctgcggagg ccatcccccc
2941 cagagccctg ggatgaggag gatggggcgt cttgcagcac cttctttggc tctgaggagc
3001 ggacggtgac ctgtgtgact gtcgtggagc cggaagcccc acccagcccg gacgtgctgc
3061 aggctgccac ccacagagtc gtggagctca ggcccccttc ccggtcccgc tccacatcca
3121 gctcccgcag caggaagaag gccaagagga agagggtgtc cagggagcac ggacggacgc
3181 gctctgggac gcgctctgaa tccagggaca ggagctcgag gtcagcgtca ccatcagtgg
3241 gtgaggagcg ccccaggagg cagcggtcca aggccaagag ccggcggtcc tccagtgacc
3301 gctccagcag ccgagagcga gctaagagga agaaagccaa ggacaagagc agggagcaca
3361 ggcggggccc ctggggccac agccggagga cgtcccggtc gcggtcgggg agccctggca
3421 gctcttccta tgagcactat gagagtagga agaagaagaa aaggagatca gcgtccagac
3481 ctcggggaag ggagtgctcc cccaccagca gcctggagag gctctgcagg cacaagcatc
3541 agcgggaacg cagccacgag cggccagaca ggaaggagag tgtggcgtgg ccccgagacc
3601 ggaggaagcg gaggtcccgg tccccaagct cggagcacag ggcacgggag cacaggcggc
3661 ctcggtcccg tgagaagtgg ccgcagaccc ggtcccattc cccagagagg aagggggctg
3721 tgagggaggc ttccccagcg ccccttgcac agggggagcc agggcgggaa gacctcccca
3781 ccaggttgcc agccttgggg gaagcacatg tctcgccgga ggtggctacg gccgacaagg
3841 cccccctgca ggctccccct gtcctggagg tggcagctga gtgtgagccg gacgacctgg
3901 acctggatta tggcgactcc gtggaggccg gacacgtctt tgatgatttc tcaagcgacg
3961 ccgttttcat ccagctcgat gacatgagct cgccaccttc tcccgaaagc acagactctt
4021 ccccggagcg agacttccca ctgaagcctg cgttgccccc agccagcctg gccgtggccg
4081 ccatccagag ggaggtgtca ttgatgcacg atgaagaccc ttcgcagccc ccacccctgc
4141 cagagggcac ccaggagcca catttgctca ggccggacgc ggctgagaag gctgaggcac
4201 ccagttcccc ggatgtggcg cctgcgggga aggaagacag cccctctgcg agtgggaggg
4261 tacaggaggc agcccggcct gaggaggtgg tttcgcagac ccccctgctg cggtccagag
4321 ccctggtgaa gcgggtcacc tggaacctgc aggagtcgga gagcagcgcc cccgccgagg
4381 acagagcccc ccgggcacca cttcacaggc cacagaagcc ccgagaagga gcctgggaca
4441 tggaggatgt ggcccccaca ggggtcaggc aggcgttctc cgagctgccc tttcccagtc
4501 acgtgcttcc ggaacccggg ttcccagaca cagacccctc tcaggtttac agccccggcc
4561 tgccgcctgc cccggcccag ccctcaagca tcccaccctg cgcactggtc agccagccca
4621 cggtccagtt catccttcag gggagcctgc cgctagtggg ctgtggggca gcacagaccc
4681 tggccccagt gcccgctgcc ctgaccccag cctcagagcc agccagtcaa gccactgcag
4741 ccagcaactc ggaggagaag accccggccc ccaggctagc tgcggagaaa accaagaagg
4801 aggagtacat gaagaagctg cacatgcagg agcgtgctgt ggaggaggtg aagctggcca
4861 tcaagccctt ctaccagaag agggaggtga ccaaggagga gtacaaggac atcctgcgca
4921 aggccgtgca gaagatctgc cacagcaaga gtggagagat caaccccgtg aaggtggcca
4981 acctggtgaa ggcgtacgtg gacaagtaca ggcacatgcg caggcacaag aaaccagagg
5041 ccggggagga gccgcccacg cagggggccg agggctgagg ccaggcaatc acgggctatg
5101 cccggggagc tgtcgggagt ggcgggaatc ggggccatgc ccggggagct gtcgggagtg
5161 gcgggaatcg gggccatgcc cggggagctg tcgggagtgg cgggaaatgg ggggcatcac
5221 catgcctgcc gtcgggttcc tgcgctgaca cctggtctgt gcacctgtgt tgctcacagt
5281 tgaaaactgg acacttttgt atgtatatta tagagacact gtttccattc taatttatca
5341 aaaatggatt atctttagaa acctcttgat tgacttacta cttggaagat aaagcacttg
5401 gtgatcaaga ggggctcctg gtggggtggc gcgtccttga taaatctcta ggtggcctcc
5461 cgccaacagc tgctgtgtac ctttggctct gaattaggaa tatctttact ttctcttttc
5521 caaaaaaaaa aaaaaaaaa
//