LOCUS BC146662 3322 bp mRNA linear HUM 23-JUL-2007
DEFINITION Homo sapiens cadherin 1, type 1, E-cadherin (epithelial), mRNA
(cDNA clone MGC:164884 IMAGE:40148047), complete cds.
ACCESSION BC146662
VERSION BC146662.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3322)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3322)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Novartis Institute for Biomedical Research
cDNA Library Preparation: Novartis Institute for Biomedical
Research
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 306 Row: g Column: 7.
FEATURES Location/Qualifiers
source 1..3322
/db_xref="H-InvDB:HIT000435526"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164884 IMAGE:40148047"
/tissue_type="Donated clones,Novartis FGA collection"
/clone_lib="NIH_MGC_417"
/lab_host="DH5a"
/note="Vector: pCMV-SPORT6"
gene 1..3322
/gene="CDH1"
/gene_synonym="Arc-1"
/gene_synonym="CD324"
/gene_synonym="CDHE"
/gene_synonym="ECAD"
/gene_synonym="LCAM"
/db_xref="GeneID:999"
/db_xref="HGNC:HGNC:1748"
/db_xref="MIM:192090"
CDS 108..2051
/gene="CDH1"
/gene_synonym="Arc-1"
/gene_synonym="CD324"
/gene_synonym="CDHE"
/gene_synonym="ECAD"
/gene_synonym="LCAM"
/codon_start=1
/product="CDH1 protein"
/protein_id="AAI46663.1"
/db_xref="GeneID:999"
/db_xref="HGNC:HGNC:1748"
/db_xref="MIM:192090"
/translation="MGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFTVPRR
HLERGRVLGRVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLRFHNPQIHFLVYA
WDSTYRKFSTKVTLNTVGHHHRPPPHQASVSGIQAELLTFPNSSPGLRRQKRDWVIPP
ISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTE
PLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGAL
PGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLD
RESFPAYTLVVQAADLQGEGLSTTATAVITVTDTNDNPPIFNPTTYKGQVPENEANVV
ITTLKVTDADAPNTPAWEAVYTILNDDGGQFVVTTNPVNNDGILKTAKGLDFEAKQQY
ILHVAVTNVVPFEVSLTTSTATVTVDVLDVNEAPIFVPPEKRVEVSEDFGVGQEITSY
TAQEPDTFMEQKITYRIWRDTANWLEINPDTGAISTRAELDREDFEHVKNSTYTALII
ATDNGSPVATGTGTLLLILSDVNDNAPIPEPRTIFFCERNPKPQVINIIDADLPPILA
SQSIGITDMSHCTCPAPQLPAIF"
BASE COUNT 879 a 824 c 781 g 838 t
ORIGIN
1 aaagcacctg tgagcttgcg gaagtcagtt cagactccag cccgctccag cccggcccga
61 cccgaccgca cccggcgcct gccctcgctc ggcgtccccg gccagccatg ggcccttgga
121 gccgcagcct ctcggcgctg ctgctgctgc tgcaggtctc ctcttggctc tgccaggagc
181 cggagccctg ccaccctggc tttgacgccg agagctacac gttcacggtg ccccggcgcc
241 acctggagag aggccgcgtc ctgggcagag tgaattttga agattgcacc ggtcgacaaa
301 ggacagccta tttttccctc gacacccgat tcaaagtggg cacagatggt gtgattacag
361 tcaaaaggcc tctacggttt cataacccac agatccattt cttggtctac gcctgggact
421 ccacctacag aaagttttcc accaaagtca cgctgaatac agtggggcac caccaccgcc
481 ccccgcccca tcaggcctcc gtttctggaa tccaagcaga attgctcaca tttcccaact
541 cctctcctgg cctcagaaga cagaagagag actgggttat tcctcccatc agctgcccag
601 aaaatgaaaa aggcccattt cctaaaaacc tggttcagat caaatccaac aaagacaaag
661 aaggcaaggt tttctacagc atcactggcc aaggagctga cacaccccct gttggtgtct
721 ttattattga aagagaaaca ggatggctga aggtgacaga gcctctggat agagaacgca
781 ttgccacata cactctcttc tctcacgctg tgtcatccaa cgggaatgca gttgaggatc
841 caatggagat tttgatcacg gtaaccgatc agaatgacaa caagcccgaa ttcacccagg
901 aggtctttaa ggggtctgtc atggaaggtg ctcttccagg aacctctgtg atggaggtca
961 cagccacaga cgcggacgat gatgtgaaca cctacaatgc cgccatcgct tacaccatcc
1021 tcagccaaga tcctgagctc cctgacaaaa atatgttcac cattaacagg aacacaggag
1081 tcatcagtgt ggtcaccact gggctggacc gagagagttt ccctgcgtat accctggtgg
1141 ttcaagctgc tgaccttcaa ggtgaggggt taagcacaac agcaacagct gtgatcacag
1201 tcactgacac caacgataat cctccgatct tcaatcccac cacgtacaag ggtcaggtgc
1261 ctgagaacga ggctaacgtc gtaatcacca cactgaaagt gactgatgct gatgccccca
1321 ataccccagc gtgggaggct gtatacacca tattgaatga tgatggtgga caatttgtcg
1381 tcaccacaaa tccagtgaac aacgatggca ttttgaaaac agcaaagggc ttggattttg
1441 aggccaagca gcagtacatt ctacacgtag cagtgacgaa tgtggtacct tttgaggtct
1501 ctctcaccac ctccacagcc accgtcaccg tggatgtgct ggatgtgaat gaagccccca
1561 tctttgtgcc tcctgaaaag agagtggaag tgtccgagga ctttggcgtg ggccaggaaa
1621 tcacatccta cactgcccag gagccagaca catttatgga acagaaaata acatatcgga
1681 tttggagaga cactgccaac tggctggaga ttaatccgga cactggtgcc atttccactc
1741 gggctgagct ggacagggag gattttgagc acgtgaagaa cagcacgtac acagccctaa
1801 tcatagctac agacaatggt tctccagttg ctactggaac agggacactt ctgctgatcc
1861 tgtctgatgt gaatgacaac gcccccatac cagaacctcg aactatattc ttctgtgaga
1921 ggaatccaaa gcctcaggtc ataaacatca ttgatgcaga ccttcctccc atcttggcct
1981 cccagagtat tgggattaca gacatgagcc actgcacctg cccagctccc caactccctg
2041 ccatttttta agagacagtt tcgctccatc gcccaggcct gggatgcagt gatgtgatca
2101 tagctcactg taacctcaaa ctctggggct caagcagttc tcccaccagc ctccttttta
2161 ttttttttgt acagatgggg tcttgctatg ttgcccaagc tggtcttaaa ctcctggcct
2221 caagcaatcc ttctgccttg gccccccaaa gtgctgggat tgtgggcatg agctgctgtg
2281 cccagcctcc atgttttaat atcaactctc actcctgaat tcagttgctt tgcccaagat
2341 aggagttctc tgatgcagaa attattgggc tcttttaggg taagaagttt gtgtctttgt
2401 ctggccacat cttgactagg tattgtctac tctgaagacc tttaatggct tccctctttc
2461 atctcctgag tatgtaactt gcaatgggca gctatccagt gacttgttct gagtaagtgt
2521 gttcattaat gtttatttag ctctgaagca agagtgatat actccaggac ttagaatagt
2581 gcctaaagtg ctgcagccaa agacagagcg gaactatgaa aagtgggctt ggagatggca
2641 ggagagcttg tcattgagcc tggcaattta gcaaactgat gctgaggatg attgaggtgg
2701 gtctacctca tctctgaaaa ttctggaagg aatggaggag tctcaacatg tgtttctgac
2761 acaagatccg tggtttgtac tcaaagccca gaatccccaa gtgcctgctt ttgatgatgt
2821 ctacagaaaa tgctggctga gctgaacaca tttgcccaat tccaggtgtg cacagaaaac
2881 cgagaatatt caaaattcca aatttttttc ttaggagcaa gaagaaaatg tggccctaaa
2941 gggggttagt tgaggggtag ggggtagtga ggatcttgat ttggatctct ttttatttaa
3001 atgtgaattt caacttttga caatcaaaga aaagactttt gttgaaatag ctttactgtt
3061 tctcaagtgt tttggagaaa aaaatcaacc ctgcaatcac tttttggaat tgtcttgatt
3121 tttcggcagt tcaagctata tcgaatatag ttctgtgtag agaatgtcac tgtagttttg
3181 agtgtataca tgtgtgggtg ctgataattg tgtattttct ttgggggtgg aaaaggaaaa
3241 caattcaagc tgagaaaagt attctcaaag atgcattttt ataaatttta ttaaacaatt
3301 ttgttaaaaa aaaaaaaaaa aa
//