LOCUS BC144666 3637 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens palladin, cytoskeletal associated protein, mRNA (cDNA
clone MGC:178214 IMAGE:9053197), complete cds.
ACCESSION BC144666
VERSION BC144666.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3637)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3637)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 18 Row: B Column: 18.
FEATURES Location/Qualifiers
source 1..3637
/db_xref="H-InvDB:HIT000503063"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:178214 IMAGE:9053197"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_361"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: GCCCGATG"
gene 1..3637
/gene="PALLD"
/gene_synonym="CGI-151"
/gene_synonym="PNCA1"
/gene_synonym="SIH002"
/db_xref="GeneID:23022"
/db_xref="HGNC:HGNC:17068"
/db_xref="MIM:608092"
CDS 174..3545
/gene="PALLD"
/gene_synonym="CGI-151"
/gene_synonym="PNCA1"
/gene_synonym="SIH002"
/codon_start=1
/product="PALLD protein"
/protein_id="AAI44667.1"
/db_xref="GeneID:23022"
/db_xref="HGNC:HGNC:17068"
/db_xref="MIM:608092"
/translation="MSGTSSHESFYDSLSDMQEESKNTDFFPGLSAFLSQEEINKSLD
LARRAIADSETEDFDSEKEISQIFSTSPASLCEHPSHKETKLGEHASRRPQDNRSTPV
QPLAEKQTKSISSPVSKRKPAMSPLLTRPSYIRSLRKAEKRGAKTPSTNVKPKTPHQR
KGGPQSQLCDKAANLIEELTSIFKAAKPRNRSPNGESSSPDSGYLSPKNQPSALLSAS
ASQSPMEDQGEMEREVKSPGARHCYQDNQDLAVPHNRKSHPQPHSALHFPAAPRFIQK
LRSQEVAEGSRVYLECRVTGNPTPRVRWFCEGKELHNTPDIQIHCEGGDLHTLIIAEA
FEDDTGRYTCLATNPSGSDTTSAEVFIEGASSTDSDSESLAFKSRAGAMPQAQKKTTS
VSLTIGSSSPKTGVTTAVIQPLSVPVQQVHSPTSYLCRPDGTTTAYFPPVFTKELQNT
AVAEGQVVVLECRVRGAPPLQVQWFRQGSEIQDSPDFRILQKKPRSTAEPEEICTLVI
AETFPEDAGIFTCSARNDYGSATSTAQLVVTSANTENCSYESMGESNNDHFQHFPPPP
PILETSSLELASKKPSEIQQVNNPELGLSRAALQMQFNAAERETNGVHPSRGVNGLIN
GKANSNKSLPTPAVLLSPTKEPPPLLAKPKLGFPKKASRTARIASDEEIQGTKDAVIQ
DLERKLRFKEDLLNNGQPRLTYEERMARRLLGADSATVFNIQEPEEETANQDIGSPHA
SVGSPLDGQKEYKVSSCEQRLISEIEYRLERSPVDESGDEVQYGDVPVENGMAPFFEM
KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT
ASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNQRGRSPRSPSGHPHVRRPRSRSRDS
GDENEPIQERFFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS
AHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKEAHKPPVFI
EKLQNTGVADGYPVRLECRVLGVPPPQIFWKKENESLTHSTDRVSMHQDNHGYICLLI
QGATKEDAGWYTVSAKNEAGIVSCTARLDVYISRH"
BASE COUNT 1079 a 949 c 853 g 756 t
ORIGIN
1 gccacaacct ccattctccc agaaaagaag aaatgctcat ctgaaattca tcacctctct
61 ggagtcttca aactgaccaa gcattgaaaa gaacacagtt tcagaaaaca gtttccagtg
121 cctctggcct tcctactgaa agcagacaca gagtgcatga agaccgttca aatatgtcag
181 ggacctcctc ccatgagtcc ttctatgact ccctctcaga catgcaggaa gaaagcaaga
241 atactgactt cttcccgggc ctttctgctt tcctcagcca ggaagagata aacaagagtc
301 ttgacctggc ccggagagcc atagccgact ccgaaacaga agattttgac tcggaaaagg
361 agatctcgca gattttcagt acttctcctg caagcctctg tgaacatcct tcccataagg
421 agaccaaatt gggtgaacac gcctcgagga gacctcagga taacaggtca acacctgtcc
481 agcctctggc agagaaacaa actaagagta tctcttcacc tgtttcaaag aggaaacctg
541 ccatgtcacc cctgctcacc aggcccagct acatccggag cctccgaaag gctgaaaagc
601 gtggtgcaaa aactcccagc acaaacgtaa agcccaaaac gccacatcaa agaaagggtg
661 gcccccagag ccagctgtgt gacaaggcag ctaatttaat tgaggagcta acatccatat
721 ttaaagccgc aaagccaaga aacagaagcc caaatgggga gtcctcgtca ccagacagtg
781 ggtacctgtc tcctaaaaat cagccgtcag ccctgctgag tgcctcagcc agccagagcc
841 ctatggaaga ccaaggggag atggaaagag aggtcaagtc ccctggggcc aggcattgct
901 accaggacaa ccaggacttg gcagtgccac acaaccgcaa gtctcaccca cagccccaca
961 gcgccctcca cttcccagct gcacctcgat tcatccaaaa gctgaggagc caagaagtag
1021 cagaagggag ccgagtttat ctggagtgta gagtcactgg aaaccccact cctcgagtca
1081 gatggttctg tgaagggaaa gaactgcaca acactcctga tattcaaatc cactgtgagg
1141 gaggggacct ccataccctg atcatagcag aggcctttga ggacgacaca ggtcgctaca
1201 cctgtttggc tacgaatccc agcggctcag acacaacatc tgctgaggtg ttcattgaag
1261 gtgccagttc aacagattct gacagtgaaa gtttagcttt caaatcaaga gctggagcta
1321 tgccacaagc tcaaaagaaa acaacttctg tttccttgac aataggatca tcatctccaa
1381 agacaggggt gaccacagct gtgattcaac cactgtctgt ccctgtgcaa caggttcaca
1441 gtccaacttc atatctctgc cgacctgatg gaaccactac tgcctacttt cctcctgttt
1501 ttacaaagga actgcaaaac acagccgtgg cggaaggcca ggtggtggtt ctggagtgcc
1561 gggtccgtgg ggcaccccct ctgcaggtcc agtggtttcg gcaagggagt gaaatccaag
1621 actctccaga tttccgaatt ctacagaaaa aacctagatc tacagctgaa cctgaggaga
1681 tttgcaccct agttatcgct gagactttcc ctgaagatgc agggatcttt acatgttcag
1741 caagaaatga ttatggatca gcaaccagca ctgcccagct ggttgtcacc tcagccaaca
1801 ctgaaaactg tagttacgag tcaatgggag aatccaacaa tgaccacttc caacactttc
1861 cacctccccc tccaatcttg gagacaagtt ccttggagtt ggcttcaaag aaaccatctg
1921 agatccagca ggtgaacaac cctgagttag gcctgagcag ggcagccctt caaatgcaat
1981 tcaatgctgc tgagagggaa acgaacggag tccatcccag ccgtggagta aatggactga
2041 ttaacggcaa agctaacagt aataaatctc ttccaacacc agctgtcctg ctttcaccca
2101 ctaaggagcc accacctctg cttgccaaac caaaactagg atttccaaag aaggccagta
2161 gaactgctag aatagcctcc gatgaggaaa ttcaaggcac aaaggatgct gttattcaag
2221 acctggaacg aaaacttcgc ttcaaggagg acctcctgaa caatggccag ccgaggttaa
2281 catacgaaga aagaatggct cgtcgactgc taggtgctga cagtgcaact gtctttaata
2341 ttcaggagcc agaagaggaa acagctaatc aggacattgg ttctcctcat gcttctgtag
2401 ggagtcctct ggatggtcaa aaggaataca aagtctccag ctgtgaacag agactcatca
2461 gtgaaataga gtacaggcta gaaaggtctc ctgtggatga atcaggtgat gaagttcagt
2521 atggagatgt gcctgtggaa aatggaatgg caccattctt tgagatgaag ctgaaacatt
2581 acaagatctt tgagggaatg ccagtaactt tcacatgtag agtggctgga aatccaaagc
2641 caaagatcta ttggtttaaa gatgggaagc agatctctcc aaagagtgat cactacacca
2701 ttcaaagaga tctcgatggg acctgctccc tccataccac agcctccacc ctagatgatg
2761 atgggaatta tacaattatg gctgcaaacc ctcagggccg catcagttgt actggacggc
2821 taatggtaca ggctgtcaac caaagaggtc gaagtccccg gtctccctca ggccatcctc
2881 atgtcagaag gcctcgttct agatcaaggg acagtggaga cgaaaatgaa ccaattcagg
2941 agcgattctt cagacctcac ttcttgcagg ctcctggaga tctgactgtt caagaaggaa
3001 aactctgcag aatggactgc aaagtcagtg ggttaccaac cccagatcta agctggcaac
3061 tagatggaaa gcccgtacgc cctgacagtg ctcacaagat gctggtgcgt gagaacgggg
3121 tgcactctct gatcatagag ccagtcacgt cacgtgatgc cggcatctac acatgtatag
3181 ctaccaaccg agcaggacag aactcattca gcctggagct tgtggttgct gctaaagaag
3241 cacacaaacc ccctgtgttt attgagaagc tccaaaacac aggagttgct gatgggtacc
3301 cagtgcggct ggaatgtcgt gtattgggag tgccaccacc tcagatattt tggaagaaag
3361 aaaatgaatc actcactcac agcactgacc gagtgagcat gcaccaggac aaccacggct
3421 acatctgcct gctcattcag ggagccacaa aagaagatgc tgggtggtat actgtgtcag
3481 ccaagaatga agcagggatt gtgtcctgta ctgccaggct ggacgtttac atttctcgac
3541 attaatagtg aaccacacca ggagaacaaa tacccaaccc agtggcatca gcagtcacag
3601 agcaccaagc caaaaaaagt acggccctca gccagtc
//