LOCUS BC144637 3381 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens integrin, alpha 10, mRNA (cDNA clone MGC:178185
IMAGE:9053168), complete cds.
ACCESSION BC144637
VERSION BC144637.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3381)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3381)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 18 Row: N Column: 19.
FEATURES Location/Qualifiers
source 1..3381
/db_xref="H-InvDB:HIT000503038"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:178185 IMAGE:9053168"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: GTAGTCTC"
gene 1..3381
/gene="ITGA10"
/gene_synonym="PRO827"
/db_xref="GeneID:8515"
/db_xref="HGNC:HGNC:6135"
/db_xref="MIM:604042"
CDS 51..3125
/gene="ITGA10"
/gene_synonym="PRO827"
/codon_start=1
/product="ITGA10 protein"
/protein_id="AAI44638.1"
/db_xref="GeneID:8515"
/db_xref="HGNC:HGNC:6135"
/db_xref="MIM:604042"
/translation="MELPFVTHLFLPLVFLTGCPTYMDVVIVLDGSNSIYPWSEVQTF
LRRLVGKLFIDPEQIQVGLVQYGESPVHEWSLGDFRTKEEVVRAAKNLSRREGRETKT
AQAIMVACTEGFSQSHGGRPEAARLLVVVTDGESHDGEELPAALKACEAGRVTRYGIA
VLGHYLRRQRDPSSFLREIRTIASDPDERFFFNVTDEAALTDIVDALGDRIFGLEGSH
AENESSFGLEMSQIGFSTHRLKDGILFGMVGAYDWGGSVLWLEGGHRLFPPRMALEDE
FPPALQNHAAYLGYSVSSMLLRGGRRLFLSGAPRFRHRGKVIAFQLKKDGAVRVAQSL
QGEQIGSYFGSELCPLDTDRDGTTDVLLVAAPMFLGPQNKETGRVYVYLVGQQSLLTL
QGTLQPEPPQDARFGFAMGALPDLNQDGFADVAVGAPLEDGHQGALYLYHGTQSGVRP
HPAQRIAAASMPHALSYFGRSVDGRLDLDGDDLVDVAVGAQGAAILLSSRPIVHLTPS
LEVTPQAISVVQRDCRRRGQEAVCLTAALCFQVTSRTPGRWDHQFYMRFTASLDEWTA
GARAAFDGSGQRLSPRRLRLSVGNVTCEQLHFHVLDTSDYLRPVALTVTFALDNTTKP
GPVLNEGSPTSIQKLVPFSKDCGPDNECVTDLVLQVNMDIRGSRKAPFVVRGGRRKVL
VSTTLENRKENAYNTSLSLIFSRNLHLASLTPQRESPIKVECAAPSAHARLCSVGHPV
FQTGAKVTFLLEFEFSCSSLLSQVFVKLTASSDSLERNGTLQDNTAQTSAYIQYEPHL
LFSSESTLHRYEVHPYGTLPVGPGPEFKTTLRVQNLGCYVVSGLIISALLPAVAHGGN
YFLSLSQVITNNASCIVQNLTEPPGPPVHPEELQHTNRLNGSNTQCQVVRCHLGQLAK
GTEVSVGLLRLVHNEFFRRAKFKSLTVVSTFELGTEEGSVLQLTEASRWSESLLEVVQ
TRPILISLWILIGSVLGGLLLLALLVFCLWKLGFFAHKKIPEEEKREEKLEQ"
BASE COUNT 757 a 896 c 939 g 789 t
ORIGIN
1 gagggacaga ggccagagga cttctcatac tggacagaaa ccgatcaggc atggaactcc
61 ccttcgtcac tcacctgttc ttgcccctgg tgttcctgac aggctgccca acatacatgg
121 atgttgtcat tgtcttggat ggctccaaca gcatctaccc ctggtctgaa gttcagacct
181 tcctacgaag actggtaggg aaactgttta ttgacccaga acagatacag gtgggactgg
241 tacagtatgg ggagagccct gtacatgagt ggtccctggg agatttccga acgaaggaag
301 aagtggtgag agcagcaaag aacctcagtc ggcgggaggg acgagaaaca aagactgccc
361 aagcaataat ggtggcctgc acagaagggt tcagtcagtc ccatgggggc cgacccgagg
421 ctgccaggct actggtggtt gtcactgatg gagagtccca tgatggagag gagcttcctg
481 cagcactaaa ggcctgtgag gctggaagag tgacacgcta tgggattgca gtccttggtc
541 actacctccg gcggcagcga gatcccagct ctttcctgag agaaattaga actattgcca
601 gtgatccaga tgagcgattc ttcttcaatg tcacagatga ggctgctctg actgacattg
661 tggatgcact aggagatcgg atttttggcc ttgaagggtc ccatgcagaa aacgaaagct
721 cctttgggct ggaaatgtct cagattggtt tctccactca tcggctaaag gatgggattc
781 tttttgggat ggtgggggcc tatgactggg gaggctctgt gctatggctt gaaggaggcc
841 accgcctttt ccccccacga atggcactgg aagacgagtt cccccctgca ttgcagaacc
901 atgcagccta cctgggttac tctgtttctt ccatgctttt gcggggtgga cgccgcctgt
961 ttctctctgg ggctcctcga tttagacatc gaggaaaagt catcgccttc cagcttaaga
1021 aagatggggc tgtgagggtt gcccagagcc tccaggggga gcagattggt tcatactttg
1081 gcagtgagct ctgcccattg gatacagata gggatggaac aactgatgtc ttacttgtgg
1141 ctgcccccat gttcctggga ccccagaaca aggaaacagg acgtgtttat gtgtatctgg
1201 taggccagca gtccttgctg accctccaag gaacacttca gccagaaccc ccccaggatg
1261 ctcggtttgg ctttgccatg ggagctcttc ctgatctgaa ccaagatggt tttgctgatg
1321 tggctgtggg ggcgcctctg gaagatgggc accagggagc actgtacctg taccatggaa
1381 cccagagtgg agtcaggccc catcctgccc agaggattgc tgctgcctcc atgccacatg
1441 ccctcagcta ctttggccga agtgtggatg gtcggctaga tctggatgga gatgatctgg
1501 tcgatgtggc tgtgggtgcc cagggggcag ccatcctgct cagctcccgg cccattgtcc
1561 atctgacccc atcactggag gtgaccccac aggccatcag tgtggttcag agggactgta
1621 ggcggcgagg ccaagaggca gtctgtctga ctgcagccct ttgcttccaa gtgacctccc
1681 gtactcctgg tcgctgggat caccaattct acatgaggtt caccgcatca ctggatgaat
1741 ggactgctgg ggcacgtgca gcatttgatg gctctggcca gaggttgtcc cctcggaggc
1801 tccggctcag tgtggggaat gtcacttgtg agcagctaca cttccatgtg ctggatacat
1861 cagattacct ccggccagtg gccttgactg tgacctttgc cttggacaat actacaaagc
1921 cagggcctgt gctgaatgag ggctcaccca cctctataca aaagctggtc cccttctcaa
1981 aggattgtgg ccctgacaat gaatgtgtca cagacctggt gcttcaagtg aatatggaca
2041 tcagaggctc caggaaggcc ccatttgtgg ttcgaggtgg ccggcggaaa gtgctggtat
2101 ctacaactct ggagaacaga aaggaaaatg cttacaatac gagcctgagt ctcatcttct
2161 ctagaaacct ccacctggcc agtctcactc ctcagagaga gagcccaata aaggtggaat
2221 gtgccgcccc ttctgctcat gcccggctct gcagtgtggg gcatcctgtc ttccagactg
2281 gagccaaggt gacctttctg ctagagtttg agtttagctg ctcctctctc ctgagccagg
2341 tcttcgtgaa gctgactgcc agcagtgaca gcctggagag aaatgggacc cttcaagata
2401 acacagccca gacctcagcc tacatccaat atgagcccca cctcctgttc tctagtgagt
2461 ctaccctgca ccgctatgag gttcacccat atgggaccct cccagtgggt cctggcccag
2521 aattcaaaac cactctcagg gttcagaacc taggctgcta tgtggtcagt ggcctcatca
2581 tctcagccct ccttccagct gtggcccatg ggggcaatta cttcctatca ctgtctcaag
2641 tcatcactaa caatgcaagc tgcatagtgc agaacctgac tgaaccccca ggcccacctg
2701 tgcatccaga ggagcttcaa cacacaaaca gactgaatgg gagcaatact cagtgtcagg
2761 tggtgaggtg ccaccttggg cagctggcaa aggggactga ggtctctgtt ggactattga
2821 ggctggttca caatgaattt ttccgaagag ccaagttcaa gtccctgacg gtggtcagca
2881 cctttgagct gggaaccgaa gagggcagtg tcctacagct gactgaagcc tcccgttgga
2941 gtgagagcct cttggaggtg gttcagaccc ggcctatcct catctccctg tggatcctca
3001 taggcagtgt cctgggaggg ttgctcctgc ttgctctcct tgtcttctgt ctgtggaagc
3061 ttggcttctt tgcccataag aaaatccctg aggaagaaaa aagagaagag aagttggagc
3121 aatgaatgta gaataagggt ctagaaagtc ctccctggca gcttcttcaa gagacttgca
3181 taaaagcaga ggtttggggg ctcagatggg acaagaagcc gcctctggac tatctcccca
3241 gaccagcagc ctgacttgac ttttgagtcc tagggatgct gctggctaga gatgaggctt
3301 tacctcagac aagaagagct ggcaccaaaa ctagccatgc tcccaccctc tgcttccctc
3361 ctcctcgtga tcctggttcc a
//