LOCUS BC144535 4355 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens collagen, type XXII, alpha 1, mRNA (cDNA clone
MGC:178079 IMAGE:9053062), complete cds.
ACCESSION BC144535
VERSION BC144535.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4355)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4355)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 677 Row: h Column: 20
isoform, single-stranded.
FEATURES Location/Qualifiers
source 1..4355
/db_xref="H-InvDB:HIT000502943"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:178079 IMAGE:9053062"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_313"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: CGTTTTGC"
gene 1..4355
/gene="COL22A1"
/db_xref="GeneID:169044"
/db_xref="HGNC:HGNC:22989"
/db_xref="MIM:610026"
CDS 40..3999
/gene="COL22A1"
/codon_start=1
/product="COL22A1 protein"
/protein_id="AAI44536.1"
/db_xref="GeneID:169044"
/db_xref="HGNC:HGNC:22989"
/db_xref="MIM:610026"
/translation="MAGLRGNAVAGLLWMLLLWSGGGGCQAQRAGCKSVHYDLVFLLD
TSSSVGKEDFEKVRQWVANLVDTFEVGPDRTRVGVVRYSDRPTTAFELGLFGSQEEVK
AAARRLAYHGGNTNTGDALRYITARSFSPHAGGRPRDRAYKQVAILLTDGRSQDLVLD
AAAAAHRAGIRIFAVGVGEALKEELEEIASEPKSAHVFHVSDFNAIDKIRGKLRRRLC
ENVLCPSVRVEGDRFKHTNGGTKEITGFDLMDLFSVKEILGKRENGAQSSYVRMGSFP
VVQSTEDVFPQGLPDEYAFVTTFRFRKTSRKEDWYIWQVIDQYGIPQVSIRLDGENKA
VEYNAVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGP
IGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGGSPGLPGEI
GFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAG
RPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGT
TSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGA
PGAAGNPGAPGHVGAPGPSGPPGSVGDPGLRGTPGKDGERGEKGAAGEEGSPGPVGPR
GDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVA
GPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGD
INLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGI
AGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSP
GKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKG
HTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGE
PGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGER
GDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPG
LRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLP
GRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGE
PGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPSQCAYFASLAARPGNVKGP"
BASE COUNT 964 a 1222 c 1433 g 736 t
ORIGIN
1 cctggccaag agaagcctgt ccccaagaac aggagagcca tggccggcct ccgagggaac
61 gctgtggctg gcctcctctg gatgctgctg ctgtggagtg ggggcggcgg ctgccaggct
121 cagcgggcag gttgcaaaag tgtccactac gatctggtct tcctcctgga cacctcctcc
181 agcgtgggca aggaggactt tgagaaggtc cggcagtggg tggccaacct ggtggacacc
241 ttcgaggtgg gccccgaccg cacccgtgtg ggggtcgtgc gctacagcga ccggcccacc
301 acggccttcg agttgggact ctttggctcg caggaggagg tcaaggcggc tgcccggcgt
361 ctcgcctacc acgggggcaa caccaacacg ggagacgcgc tccgctacat cacggcccgc
421 agcttctccc cacacgccgg cggccgcccc agggaccgcg cctacaagca ggtggccatc
481 ctgctcaccg acggccgcag ccaggacctg gtgctggacg ccgcggcggc agcccaccgc
541 gctggcatcc gcatctttgc cgtgggcgtg ggcgaggcac tcaaggagga gctggaggag
601 atcgcctcag agcccaagtc cgcccacgtc ttccacgtgt ccgacttcaa tgccatcgac
661 aagatccggg gcaagctgcg gcgccgtctt tgtgaaaatg tgctctgtcc tagcgttcgt
721 gtagaaggag atcgctttaa gcacaccaat ggaggaacca aggaaatcac aggttttgac
781 ctgatggatt tgttcagtgt gaaggaaatc ttggggaaga gagagaatgg agctcagagt
841 tcctatgtac ggatgggatc cttccctgtg gtgcaaagta ctgaggatgt gttcccccaa
901 ggtttacctg atgagtacgc ctttgtcaca accttccggt tcaggaaaac ctctcggaag
961 gaagactggt atatctggca ggtcatcgac cagtacggca tcccacaggt ctccatccgg
1021 ctggatggtg aaaacaaggc agtcgagtac aacgctgtgg caggacccca gggagaaaag
1081 ggtgacgtgg gacctgcggg gccacctggt gtaccaggct cagtggtgca gcaagagggc
1141 ttgaaagggg aacagggagc tccaggaccc agaggtcacc aaggcgcccc cggtcctcca
1201 ggagctcggg gtccaatagg cccagaaggc agggatggac ctcctggttt gcaaggtctc
1261 cgagggaaga aaggtgacat gggaccacct ggaatccctg gattgctggg gctgcagggc
1321 cctccaggac cccctggtgt cccaggcccc cctggaccgg gaggttctcc gggtttgcct
1381 ggagagatcg gcttcccggg aaagcctgga cctcctgggc ccacgggacc ccctggaaag
1441 gacgggccaa atggaccacc aggtccgcca ggaaccaagg gagaaccagg agaaagaggg
1501 gaagatggtc tgcctggaaa accaggcctt cggggagaaa ttggggagca gggcctggca
1561 ggccgacctg gagagaaggg agaagcaggc ctcccagggg ctccaggctt cccaggtgtg
1621 agaggagaga aaggagacca gggagaaaaa ggtgaactgg gacttccagg actgaaaggt
1681 gaccgaggtg aaaagggtga agctggtcct gcaggccctc ccgggttacc tggaactaca
1741 tccctgttca caccacatcc acggatgccc ggagaacaag ggcccaaagg agagaagggc
1801 gatccaggcc tgcctgggga accgggactg cagggccgtc ctggagaatt ggggcctcag
1861 ggacccactg gaccaccggg tgccaaggga caggaaggtg cacatggggc tcctggagca
1921 gctggaaacc ccggtgctcc cggacatgtc ggtgcccccg gtcccagtgg ccctccagga
1981 agtgtgggtg atcccggcct cagaggcacc ccagggaaag atggggagcg tggtgagaag
2041 ggtgcagcgg gggaagaagg cagcccaggg ccagttggtc ccaggggaga tcctggtgct
2101 cctgggctcc ctgggccacc cggaaaaggg aaggatggag agccgggact ccgtggatca
2161 cctggactcc ctggacccct aggaaccaag ggggatcgag gagctcctgg gatccctggt
2221 tctcctggca gccgtggtga cccaggcatt ggggttgctg gccctcctgg cccttccgga
2281 ccaccaggag acaaaggatc cccgggatca cgaggcttac ctggattccc tggcccccag
2341 ggcccagccg gccgggacgg tgcaccagga aatccaggag aaagagggcc tcctggcaag
2401 ccgggcctct cttcactact gtctccaggg gacataaatc tcttggctaa ggatgtgtgc
2461 aatgactgcc ctcctggccc cccaggcctc cctggtctac caggttttaa aggggacaaa
2521 ggtgtcccag gaaagccagg gagagaaggc acagaaggga aaaagggaga ggctgggcct
2581 ccaggcctac cagggccccc aggaatagct ggaccacagg gaagtcaagg agaacgtggt
2641 gcagatggtg aggttgggca gaaaggtgat cagggtcatc ctggagttcc aggtttcatg
2701 gggcccccag ggaaccctgg gccaccaggg gcagatggaa ttgcgggagc tgctggacca
2761 ccaggaatcc aagggtcacc tgggaaagaa ggccctcctg gcccccaagg cccatctgga
2821 ttacccggaa tcccaggaga agaaggcaaa gagggcagag atggaaagcc gggtccccct
2881 ggagagccgg gcaaagcagg agagccaggt ctaccaggac cagagggtgc ccgaggccca
2941 cctggcttca agggacacac aggcgattct ggtgcacccg gtccccgggg agagtctggt
3001 gccatggggc ttcctggtca ggaagggtta ccaggaaaag atggtgacac tggacccact
3061 gggccacagg gtccccaagg accaaggggc ccaccgggca agaatggatc accgggatct
3121 ccaggagagc ctggcccttc aggaacccct ggccagaaag gaagcaaagg ggaaaatggc
3181 agcccaggac ttcctggctt cctgggtccc cgtgggcctc cgggagaacc aggagagaaa
3241 ggagtcccag gcaaggaggg ggtccctggg aagcctggag agcctggatt caaaggagaa
3301 aggggagatc ctgggatcaa aggtgacaaa ggacctcctg gtggaaaagg ccagcctggg
3361 gaccctggaa tcccaggcca caaaggccac acaggcctga tgggtcccca aggactacct
3421 ggggagaatg gaccagttgg acccccaggg cctccaggcc agccgggatt tccaggactg
3481 aggggggagt ctccatccat ggaaaccctg cgtcggctta ttcaagaaga gctggggaag
3541 cagcttgaaa ccagactcgc ctacctcctg gcccagatgc ccccggcgta catgaagtca
3601 tctcaaggca gacctgggcc cccagggccc cctggaaaag atgggcttcc aggccgggcc
3661 ggccccatgg gggagccagg tcgtcctggg caggggggtc tggaaggacc ctctggaccc
3721 ataggtccca aaggtgagcg aggagccaaa ggtgacccag gtgcacctgg agttggcctc
3781 cgaggcgaga tgggaccccc tggaatccca ggtcaacccg gggaacctgg ctatgctaaa
3841 gatggacttc ctgggatccc tggccctcaa ggggagacag gaccagctgg acatcctggc
3901 ctcccaggac ctcccggtcc cccaggccaa tgtgaccctt cccagtgtgc ctacttcgcc
3961 agccttgctg cccggccggg taatgtgaag ggtccctaaa ggactctgga aagccagaag
4021 actgcagtgg atttctgaaa cttgaactca gagcccagtg ggaagccaga ggtcttgaaa
4081 gacttcagcc atgtgttcct tttttttttc tttcttttat cgtttgcttt ttgttttatt
4141 ttcttgagag acctcaaaat tattaaatcc aacagacgct gccggtcggt cagattatta
4201 ttaatattat tgttgttgtt aattattatt attatttcat atgctgatgc tttgtgagtt
4261 cttttccact cctttaaagt tgggaaaact tgattcgtgg ggcaggagat tgtttcttca
4321 ttcttctgac agcccccatc tgacgcgtaa ctgcc
//