LOCUS BC144293 5227 bp mRNA linear HUM 08-JAN-2009
DEFINITION Homo sapiens PHD and ring finger domains 1, mRNA (cDNA clone
MGC:177830 IMAGE:9052813), complete cds.
ACCESSION BC144293
VERSION BC144293.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5227)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5227)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 17 Row: D Column: 20.
FEATURES Location/Qualifiers
source 1..5227
/db_xref="H-InvDB:HIT000502716"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177830 IMAGE:9052813"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_364"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: CATGGTCT"
gene 1..5227
/gene="PHRF1"
/db_xref="GeneID:57661"
/db_xref="HGNC:HGNC:24351"
/db_xref="MIM:611780"
CDS 94..5040
/gene="PHRF1"
/codon_start=1
/product="PHRF1 protein"
/protein_id="AAI44294.1"
/db_xref="GeneID:57661"
/db_xref="HGNC:HGNC:24351"
/db_xref="MIM:611780"
/translation="MDDDSLDELVARSPGPDGHPQVGPADPAGDFEESSVGSSGDSGD
DSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSEDDGETLLEVAGTQGKLEAAGSFNSD
DDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPVDRTLFKCICIRAQ
FGGKILRKIPVENTKASEEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQ
EVPVDEWFCPECAAPGVVLAADAGPVSEEEVSLLLADVVPTTSRLRPRAGRTRAIART
RQSERVRATVNRNRISTARRVQHTPGRLGSSLLDEAIEAVATGLSTAVYQRPLTPRTP
ARRKRKTRRRKKVPGRKKTPSGPSAKSKSSATRSKKRQHRVKKRRGKKVKSEATTRSR
IARTLGLRRPVHSSCIPSVLKPVEPSLGLLRADIGAASLSLFGDPYELDPFDSEELSA
NPLSPLSAKRRALSRSALQSHQPVARPVSVGLSRRRLPAAVPEPDLEEEPVPDLLGSI
LSGQSLLMLGSSDVIIHRDGSLSAKRAAPVSFQRNSGSLSRGEEGFKGCLQPRALPSG
SPAQGPSGNRPQSTGLSCQGRSRTPARTAGAPVRLDLPAAPGAVQARNLSNGSVPGFR
QSHSPWFNGTNKHTLPLASAASKISSRDSKPPCRSVVPGPPLKPAPRRTDISELPRIP
KIRRDDGGGRRDAAPAHGQSIEIPSACISRLTGREGTGQPGRGTRAESEASSRVPREP
GVHTGSSRPPAPSSHGSLAPLGPSRGKGVGSTFESFRINIPGNMAHSSQLSSPGFCNT
FRPVDDKEQRKENPSPLFSIKKTKQLRSEVYDPSDPTGSDSSAPGSSPERSGPGLLPS
EITRTISINSPKAQTVQAVRCVTSYTVESIFGTEPEPPLGPSSAMSKLRGAVAAEGAS
DTEREEPTESQGLAARLRRPSPPEPWDEEDGASCSTFFGSEERTVTCVTVVEPEAPPS
PDVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRKRVSREHGRTRSGTRSESRDRSSR
SASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKDKSREHRRGPWGHSRRTS
RSRSGSPGSSSYEHYESRKKKKRRSASRPRGRECSPTSSLERLCRHKHQRERSHERPD
RKESVAWPRDRRKRRSRSPSSEHRAREHRRPRSREKWPQTRSHSPERKGAVREASPAP
LAQGEPGREDLPTRLPALGEAHVSPEVATADKAPLQAPPVLEVAAECEPDDLDLDYGD
SVEAGHVFDDFSSDAVFIQLDDMSSPPSPESTDSSPERDFPLKPALPPASLAVAAIQR
EVSLMHDEDPSQPPPLPEGTQEPHLLRPDAAEKAEAPSSPDVAPAGKEDSPSASGRVQ
EAARPEEVVSQTPLLRSRALVKRVTWNLQESESSAPAEDRAPRAPLHRPQKPREGAWD
MEDVAPTGVRQVFSELPFPSHVLPEPGFPDTDPSQVYSPGLPPAPAQPSSIPPCALVS
QPTVQFILQGSLPLVGCGAAQTLAPVPAALTPASEPASQATAASNSEEKTPAPRLAAE
KTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEI
NPVKVANLVKAYVDKYRHMRRHKKPEAGEEPPTQGAEG"
BASE COUNT 1097 a 1612 c 1744 g 774 t
ORIGIN
1 gcctaggagc gactctcggt cgtgcagcgg cggcgagcgc tcgcgagcgg ctgcgggacg
61 cgaggtttcc ggagctgagc tcaatgtgca gcaatggatg acgacagcct ggatgagctt
121 gtggcccgga gcccagggcc ggatggacac ccacaggtcg gccctgcgga cccggcaggt
181 gactttgaag aaagcagcgt gggcagcagt ggggactctg gggacgacag tgacagcgag
241 catggagatg gcacagacgg agaagacgag ggggcgtctg aggaggaaga cctggaagac
301 agatctggtt ccgaggattc tgaagacgac ggggagacat tgctggaggt agcgggtact
361 caggggaaac tggaagccgc tggctctttc aattctgatg atgatgcaga gagctgccca
421 atctgtctca acgcattcag agaccaggcc gtggggacgc cggagaactg tgcccattac
481 ttctgcctgg actgcattgt cgaatggtcc aagaatgcca attcctgtcc agttgatcga
541 actctattta agtgcatttg tattcgagct caatttggtg gtaaaatctt aagaaagatc
601 ccagtggaga acaccaaagc gagcgaggag gaggaggacc cgaccttctg tgaggtgtgc
661 ggcaggagcg accgtgagga caggcttttg ctctgcgacg gctgcgatgc ggggtaccac
721 atggaatgct tggacccccc tctccaggag gtgccggtgg acgagtggtt ctgcccggaa
781 tgtgctgcgc ctggtgttgt ccttgccgct gatgcgggtc ccgtgagtga ggaggaggtc
841 tccctgctct tggctgatgt ggtgcccacc accagcaggc ttcggcctcg agcaggtagg
901 acccgggcga tagccaggac acggcagagt gagagagtga gagcaaccgt gaaccggaac
961 cggatctcca cggccaggag ggtccagcac acaccagggc gcctcgggtc ttccctgctg
1021 gatgaagcca tcgaggctgt ggcgactggc ctgagcactg ccgtgtatca gcgccccctg
1081 acgccgcgca ctcccgcccg acggaagagg aagacaagaa gacggaagaa agtgccggga
1141 agaaagaaaa ccccgtccgg accatccgca aaaagtaaga gctcagcgac aagatctaag
1201 aaacgccaac atcgagtgaa gaagagaaga gggaagaagg taaagagtga agccaccact
1261 cgctctcgaa tcgcgcggac gctgggcctg cgcaggcctg ttcacagcag ctgcatcccg
1321 tcagtgttga agccagtgga gccctctttg gggctgctga gagcggatat tggagctgcc
1381 tctctgtctc tgtttggaga tccttatgag ctggatccct tcgacagtga agagctttct
1441 gcaaaccctc tttcccctct gagtgccaag agacgggctc tgtcccggtc agccctgcag
1501 tcccaccagc ccgtggccag gcccgtctcc gtggggcttt ccaggaggcg cctccctgcc
1561 gcggtgccag agccagactt ggaggaggag ccagtgcctg acctgctggg cagcatcctg
1621 tcgggccaga gcctcctgat gctgggcagc agtgatgtca tcatccaccg cgacggctcc
1681 ctcagcgcca agagggcggc tccagtttct tttcagcgaa actcaggcag tctgtccaga
1741 ggggaagaag gattcaaggg ctgcctgcag ccccgagcac tgccctccgg gagcccggcc
1801 caaggcccgt caggaaacag gccacagagc acagggctca gctgtcaagg caggtcccgc
1861 acccccgccc gcaccgcggg ggcgcctgtg aggctggact tgccagcagc ccctggggcg
1921 gttcaggctc ggaacttgtc aaatgggagt gtgcctggct tcagacagag ccacagcccc
1981 tggttcaacg gcaccaacaa gcacaccttg ccccttgcct ctgccgcgtc taagatctca
2041 agcagagatt ctaagccccc atgtcgcagt gtggtgccgg ggcctcccct gaagccagcg
2101 cccagaagaa cagacatctc tgagctaccc aggataccaa agatcaggag agatgacggt
2161 ggtggcagac gggatgcggc cccggcccac gggcagagca ttgagatccc cagtgcctgc
2221 atcagccgac tgactggcag ggagggcacc gggcagccag ggcgaggcac acgggcagag
2281 agcgaggcca gcagcagggt gccccgggag cccggggtgc acacgggcag ctcccggccc
2341 ccagccccca gctcccatgg cagtttggcc ccactgggac catcaagagg gaaaggggtc
2401 gggtcgacct ttgagagctt ccggatcaat attcctggaa acatggcaca ttccagccag
2461 ctctccagcc ctggcttctg taacacgttc cggcctgtgg acgataagga gcagaggaag
2521 gagaacccct cacccctctt ctccatcaag aagacgaagc agctgcggag cgaggtctac
2581 gacccatccg accccaccgg ctccgactcc agcgcccctg gcagcagccc cgagaggtct
2641 ggccccggcc tcctgccctc tgagatcaca cgaaccatct ccatcaacag cccgaaggcc
2701 cagacggtgc aggctgtgcg ctgcgtcacc tcctacacgg tggagagcat ctttggtaca
2761 gagcccgaac cccctctcgg accgtcctcc gccatgtcca agctccgggg tgcagtggct
2821 gccgaggggg cctctgacac ggagcgagag gagcccacag agagccaggg cctggctgcc
2881 cggctgcgga ggccatcccc cccagagccc tgggatgagg aggatggggc gtcttgcagc
2941 accttctttg gctctgagga gcggacggtg acctgtgtga ctgtcgtgga gccggaagcc
3001 ccacccagcc cggacgtgct gcaggctgcc acccacagag tcgtggagct caggccccct
3061 tcccggtccc gctccacatc cagctcccgc agcaggaaga aggccaagag gaagagggtg
3121 tccagggagc acggacggac gcgctctggg acgcgctctg aatccaggga caggagctcg
3181 aggtcagcgt caccatcagt gggtgaggag cgccccagga ggcagcggtc caaggccaag
3241 agccggcggt cctccagtga ccgctccagc agccgagagc gagctaagag gaagaaagcc
3301 aaggacaaga gcagggagca caggcggggc ccctggggcc acagccggag gacgtcccgg
3361 tcgcggtcgg ggagccctgg cagctcttcc tatgagcact atgagagtag gaagaagaag
3421 aaaaggagat cagcgtccag acctcgggga agggagtgct cccccaccag cagcctggag
3481 aggctctgca ggcacaagca tcagcgggaa cgcagccacg agcggccaga caggaaggag
3541 agtgtggcgt ggccccgaga ccggaggaag cggaggtccc ggtccccaag ctcggagcac
3601 agggcacggg agcacaggcg gcctcggtcc cgtgagaagt ggccgcagac ccggtcccat
3661 tccccagaga ggaagggggc tgtgagggag gcttccccag cgccccttgc acagggggag
3721 ccagggcggg aagacctccc caccaggttg ccagccttgg gggaagcaca tgtctcgccg
3781 gaggtggcta cggccgacaa ggcccccctg caggctcccc ctgtcctgga ggtggcagct
3841 gagtgtgagc cggacgacct ggacctggat tatggcgact ccgtggaggc cggacacgtc
3901 tttgatgatt tctcaagcga cgccgttttc atccagctcg atgacatgag ctcgccacct
3961 tctcccgaaa gcacagactc ttccccggag cgagacttcc cactgaagcc tgcgttgccc
4021 ccagccagcc tggccgtggc cgccatccag agggaggtgt cattgatgca cgatgaagac
4081 ccttcgcagc ccccacccct gccagagggc acccaggagc cacatttgct caggccggac
4141 gcggctgaga aggctgaggc acccagttcc ccggatgtgg cgcctgcggg gaaggaagac
4201 agcccctctg cgagtgggag ggtacaggag gcagcccggc ctgaggaggt ggtttcgcag
4261 acccccctgc tgcggtccag agccctggtg aagcgggtca cctggaacct gcaggagtcg
4321 gagagcagcg cccccgccga ggacagagcc ccccgggcac cacttcacag gccacagaag
4381 ccccgagaag gagcctggga catggaggat gtggccccca caggggtcag gcaggtgttc
4441 tccgagctgc cctttcccag tcacgtgctt ccggaacccg ggttcccaga cacagacccc
4501 tctcaggttt acagccccgg cctgccgcct gccccggccc agccctcaag catcccaccc
4561 tgcgcactgg tcagccagcc cacggtccag ttcatccttc aggggagcct gccgctagtg
4621 ggctgtgggg cagcacagac cctggcccca gtgcccgctg ccctgacccc agcctcagag
4681 ccagccagtc aagccactgc agccagcaac tcggaggaga agaccccggc ccccaggcta
4741 gctgcggaga aaaccaagaa ggaggagtac atgaagaagc tgcacatgca ggagcgtgct
4801 gtggaggagg tgaagctggc catcaagccc ttctaccaga agagggaggt gaccaaggag
4861 gagtacaagg acatcctgcg caaggccgtg cagaagatct gccacagcaa gagtggagag
4921 atcaaccccg tgaaggtggc caacctggtg aaggcgtacg tggacaagta caggcacatg
4981 cgcaggcaca agaaaccaga ggccggggag gagccgccca cgcagggggc cgagggctga
5041 ggccaggcaa tcacgggcta tgcccgggga gctgtcggga gtggcgggaa tcggggccat
5101 gcccggggag ctgtcgggag tggcgggaat cggggccatg cccggggagc tgtcgggagt
5161 ggcgggaaat ggggggcatc accatgcctg ccgtcgggtt cctgcgctga cacctggtct
5221 gtgcacc
//