LOCUS BC144245 3121 bp mRNA linear HUM 08-JAN-2009
DEFINITION Homo sapiens very low density lipoprotein receptor, mRNA (cDNA
clone MGC:177782 IMAGE:9052765), complete cds.
ACCESSION BC144245
VERSION BC144245.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3121)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3121)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 17 Row: L Column: 21.
FEATURES Location/Qualifiers
source 1..3121
/db_xref="H-InvDB:HIT000502671"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177782 IMAGE:9052765"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_362"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: AGCAATTA"
gene 1..3121
/gene="VLDLR"
/gene_synonym="CHRMQ1"
/gene_synonym="VLDLRCH"
/db_xref="GeneID:7436"
/db_xref="HGNC:HGNC:12698"
/db_xref="MIM:192977"
CDS 138..2675
/gene="VLDLR"
/gene_synonym="CHRMQ1"
/gene_synonym="VLDLRCH"
/codon_start=1
/product="very low density lipoprotein receptor"
/protein_id="AAI44246.1"
/db_xref="GeneID:7436"
/db_xref="HGNC:HGNC:12698"
/db_xref="MIM:192977"
/translation="MGTSALWALWLLLALCWAPRESGATGTGRKAKCEPSQFQCTNGR
CITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSD
ESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFT
CSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWVCDDDADC
SDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSR
TCRPDQFECEDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDI
SKVCNQEQDCRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELIDRK
TCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRD
IRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKM
IDNVYNPAAIAVDWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPL
SGFVYWSDWGEPAKIEKAGMNGFDRRPLVTADIQWPNGITLDLIKSRLYWLDSKLHML
SSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLV
NNLNDAQDIIVYHELVQPSGKNWCEEDMENGGCEYLCLPAPQINDHSPKYTCSCPSGY
NVEENGRDCQRINVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGGYLMWRNWQHKN
MKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA"
BASE COUNT 848 a 707 c 785 g 781 t
ORIGIN
1 gccaactcct tcccctcctt ctcccccttt cccctccccg cccccacctt cttcctcctt
61 tcggaagggc tggtaacttg tcgtgcggag cgaacggcgg cggcggcggc ggcggcggca
121 ccatccaggc gggcaccatg ggcacgtccg cgctctgggc actctggctg ctgctcgcgc
181 tgtgctgggc gccccgggag agcggcgcca ccggaaccgg gagaaaagcc aaatgtgaac
241 cctcccaatt ccagtgcaca aatggtcgct gtattacgct gttgtggaaa tgtgatgggg
301 atgaagactg tgttgacggc agtgatgaaa agaactgtgt aaagaagacg tgtgctgaat
361 ctgacttcgt gtgcaacaat ggccagtgtg ttcccagccg atggaagtgt gatggagatc
421 ctgactgcga agatggttca gatgaaagcc cagaacagtg ccatatgaga acatgccgca
481 tacatgaaat cagctgtggc gcccattcta ctcagtgtat cccagtgtcc tggagatgtg
541 atggtgaaaa tgattgtgac agtggagaag atgaagaaaa ctgtggcaat ataacatgta
601 gtcccgacga gttcacctgc tccagtggcc gctgcatctc caggaacttt gtatgcaatg
661 gccaggatga ctgcagcgat ggcagtgatg agctggactg tgccccgcca acctgtggcg
721 cccatgagtt ccagtgcagc acctcctcct gcatccccat cagctgggta tgcgacgatg
781 atgcagactg ctccgaccaa tctgatgagt ccctggagca gtgtggccgt cagccagtca
841 tacacaccaa gtgtccagcc agcgaaatcc agtgcggctc tggcgagtgc atccataaga
901 agtggcgatg tgatggggac cctgactgca aggatggcag tgatgaggtc aactgtccct
961 ctcgaacttg ccgacctgac caatttgaat gtgaggatgg cagctgcatc catggcagca
1021 ggcagtgtaa tggtatccga gactgtgtcg atggttccga tgaagtcaac tgcaaaaatg
1081 tcaatcagtg cttgggccct ggaaaattca agtgcagaag tggagaatgc atagatatca
1141 gcaaagtatg taaccaggag caggactgca gggactggag tgatgagccc ctgaaagagt
1201 gtcatataaa cgaatgcttg gtaaataatg gtggatgttc tcatatctgc aaagacctag
1261 ttataggcta cgagtgtgac tgtgcagctg ggtttgaact gatagatagg aaaacctgtg
1321 gagatattga tgaatgccaa aatccaggaa tctgcagtca aatttgtatc aacttaaaag
1381 gcggttacaa gtgtgaatgt agtcgtggct atcaaatgga tcttgctact ggcgtgtgca
1441 aggcagtagg caaagagcca agtctgatct tcactaatcg aagagacatc aggaagattg
1501 gcttagagag gaaagaatat atccaactag ttgaacagct aagaaacact gtggctctcg
1561 atgctgacat tgctgcccag aaactattct gggccgatct aagccaaaag gctatcttca
1621 gtgcctcaat tgatgacaag gttggtagac atgttaaaat gatcgacaat gtctataatc
1681 ctgcagccat tgctgttgat tgggtgtaca agaccatcta ctggactgat gcggcttcta
1741 agactatttc agtagctacc ctagatggaa ccaagaggaa gttcctgttt aactctgact
1801 tgcgagagcc tgcctccata gctgtggacc cactgtctgg ctttgtttac tggtcagact
1861 ggggtgaacc agctaaaata gaaaaagcag gaatgaatgg attcgataga cgtccactgg
1921 tgacagcgga tatccagtgg cctaacggaa ttacacttga ccttataaaa agtcgcctct
1981 attggcttga ttctaagttg cacatgttat ccagcgtgga cttgaatggc caagatcgta
2041 ggatagtact aaagtctctg gagttcctag ctcatcctct tgcactaaca atatttgagg
2101 atcgtgtcta ctggatagat ggggaaaatg aagcagtcta tggtgccaat aaattcactg
2161 gatcagagct agccactcta gtcaacaacc tgaatgatgc ccaagacatc attgtctatc
2221 atgaacttgt acagccatca ggtaaaaatt ggtgtgaaga agacatggag aatggaggat
2281 gtgaatacct atgcctgcca gcaccacaga ttaatgatca ctctccaaaa tatacctgtt
2341 cctgtcccag tgggtacaat gtagaggaaa atggccgaga ctgtcaaagg atcaatgtga
2401 ccacagcagt atcagaggtc agtgttcccc caaaagggac ttctgccgca tgggccattc
2461 ttcctctctt gctcttagtg atggcagcag taggtggcta cttgatgtgg cggaattggc
2521 aacacaagaa catgaaaagc atgaactttg acaatcctgt gtacttgaaa accactgaag
2581 aggacctctc catagacatt ggtagacaca gtgcttctgt tggacacacg tacccagcaa
2641 tatcagttgt aagcacagat gatgatctag cttgacttct gtgacaaatg ttgacctttg
2701 aggtctaaac aaataatacc cccgtcggaa tggtaaccga gccagcagct gaagtctctt
2761 tttcttcctc tcggctggaa gaacatcaag atacctttgc gtggatcaag cttgtgtact
2821 tgaccgtttt tatattactt ttgtaaatat tcttgtccac attctacttc agctttggat
2881 gtggttaccg agtatctgta acccttgaat ttctagacag tattgccacc tctggccaaa
2941 tatgcacttt ccctagaaag ccatattcca gcagtgaaac ttgtgctata gtgtatacca
3001 cctgtacata cattgtatag gccatctgta aatatcccag agaacaatca ctattcttaa
3061 gcactttgaa aatatttcta tgtaaattat tgtaaacttt ttcaatggtt gggacaatgg
3121 c
//