LOCUS BC144186 3939 bp mRNA linear HUM 08-JAN-2009
DEFINITION Homo sapiens contactin 5, mRNA (cDNA clone MGC:177723
IMAGE:9052706), complete cds.
ACCESSION BC144186
VERSION BC144186.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3939)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3939)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 17 Row: F Column: 17.
FEATURES Location/Qualifiers
source 1..3939
/db_xref="H-InvDB:HIT000502615"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177723 IMAGE:9052706"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_362"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: TCCCCACG"
gene 1..3939
/gene="CNTN5"
/gene_synonym="HNB-2s"
/gene_synonym="NB-2"
/db_xref="GeneID:53942"
/db_xref="HGNC:HGNC:2175"
/db_xref="MIM:607219"
CDS 291..3593
/gene="CNTN5"
/gene_synonym="HNB-2s"
/gene_synonym="NB-2"
/codon_start=1
/product="contactin 5"
/protein_id="AAI44187.1"
/db_xref="GeneID:53942"
/db_xref="HGNC:HGNC:2175"
/db_xref="MIM:607219"
/translation="MASSWKLMLFLSVTMCLSEYSKSLPGLSTSYAALLRIKKSSSSS
LFGSKTRPRYSSPSLGTLSASSPSWLGAAQNYYSPINLYHSSDAFKQDESVDYGPVFV
QEPDDIIFPTDSDEKKVALNCEVRGNPVPSYRWLRNGTEIDLESDYRYSLIDGTFIIS
NPSEAKDSGHYQCLATNTVGSILSREATLQFAYLGNFSGRTRSAVSVREGQGVVLMCS
PPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVT
NARVLSPPTPLTLRNDGVMGEYEPKIEVHFPFTVTAAKGTTVKMECFALGNPVPTITW
MKVNGYIPSKARLRKSQAVLEIPNVQLDDAGIYECRAENSREKNSFRGQLQVYTYPHW
VEKLNDTQLDSGSPLRWECKATGKPRPTYRWLKNGVPLSPQSRVEMVNGVLMIHNVNQ
SDAGMYQCLAENKYGAIYASAELKILASAPTFALNQLKKTIIVTKDQEVVIECKPQGS
PKPTISWKKGDRAVRENKRIAILPDGSLRILNASKSDEGKYVCRGENVFGSAEIIASL
SVKEPTRIELTPKRTELTVGESIVLNCKAIHDASLDVTFYWTLKGQPIDFEEEGGHFE
SIRAQASSADLMIRNILLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGIVIVEEI
TESTATLSWSPAADNHSPISSYNLQARSPFSLGWQTVKTVPEIITGDMESAMAVDLNP
WVEYEFRVVATNPIGTGDPSTPSRMIRTNEAVPKTAPTNVSGRSGRRHELVIAWEPVS
EEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSEASKFIYRDESVPPLTPFEVKVGVYNN
KGDGPFSQIVVICSAEGEPSAAPTDVKATSVSVSEILVAWKHIKESLGRPQGFEVGYW
KDMEQEDTAETVKTRGNESFVILTGLEGNTLYHFTVRAYNGAGYGPPSSEVSATTKKS
PPSQAPSNLRWEQQGSQVSLGWEPVIPLANESEVVGYKVFYRQEGHSNSQVIETQKLQ
AVVPLPDAGVYIIEVRAYSEGGDGTASSQIRVPSYSGGKITSAQSTLHSLSTSSSSVT
LLLALMIPSTSW"
BASE COUNT 1165 a 807 c 931 g 1036 t
ORIGIN
1 gaactgtgct gatgggcagg aggatgggag acaggaattg agagtcacag aggaaggaca
61 gtggagtctg gcatcttatt ggtgtcttta aaggattgcc atttaatgcc attcaagatc
121 tactaagcat catttttgca tgactactgc aaaagtatta ctttacagat accagttcct
181 ttgtcaagag catactttgg accctgtttt cagaaagcag ggcactcttt aatgaagaaa
241 caccagagct gttaaacaca ttgagacaca gaagattcta gtgactgagg atggcttcct
301 cttggaaact aatgctgttt ctgtcagtca ccatgtgtct ttcagagtat tcaaaatctc
361 ttcctggtct ctccacttca tatgctgctt tgttaagaat taagaagagt tcatcttcat
421 ctctctttgg ttccaaaacc agaccacgat acagcagccc ttcattagga acactgagtg
481 cttcttcacc cagctggcta ggggcagctc agaattatta ttcccccatc aatctttatc
541 attcctcaga tgccttcaaa caagatgaaa gtgtggacta tgggccagtt tttgtgcaag
601 aaccagatga tattattttt ccaactgatt ctgatgaaaa gaaggtagca ttgaattgtg
661 aagttcgtgg caatccagtt cccagttaca gatggcttcg aaatggaaca gaaatagatc
721 tggaaagtga ttatcgctac agtttgatag atggcacctt cattataagc aatccaagtg
781 aagcaaagga ttctggtcat tatcagtgtt tagcaaccaa cactgtgggg agtattctta
841 gtagagaagc tacactgcag tttgcctatc tgggaaattt tagtggccgg acaagaagtg
901 cagtctctgt gagggaaggc cagggtgtcg ttctgatgtg ctctcctccg ccacattcac
961 cagagatcat ctatagctgg gtatttaatg agttcccttc ctttgtggcg gaagacagcc
1021 ggcggttcat ctcccaggag acaggcaacc tttatatttc taaagtccaa acatcagatg
1081 ttggcagcta tatttgtctg gtgaaaaaca cagtgacgaa tgctagagtc cttagtcctc
1141 caacgccact cactctgcgt aatgatggtg tgatgggaga atatgagccg aaaattgagg
1201 tccattttcc tttcacggtt acagctgcta aaggaacaac tgttaagatg gaatgctttg
1261 cacttggcaa ccccgttcca acaatcacat ggatgaaggt taatggttat attcctagta
1321 aggcacgtct gcggaaatct caggcggtgc tggaaatacc gaatgtacag ctggatgatg
1381 caggcattta tgagtgcaga gctgaaaact cacgtgaaaa aaattccttt cgtggacaat
1441 tacaagtata cacctaccca cactgggtag aaaaactgaa tgatactcag ttagacagtg
1501 ggagccctct ccgatgggaa tgtaaggcta ctggaaaacc cagacccacg tatcgttggc
1561 tgaagaatgg agtacccctc tcacctcaga gtagggttga gatggttaat ggagtattga
1621 tgatccacaa tgtgaatcaa tcagatgctg gaatgtatca gtgtttggct gaaaataagt
1681 atggagccat ttacgctagt gctgagctga agattctagc ttcagctccc acttttgcac
1741 tgaatcaact gaagaaaaca ataattgtta ccaaagacca agaagttgtc atagagtgca
1801 aaccccaagg ctctccaaaa ccaaccatct cttggaagaa aggagacaga gcagttagag
1861 aaaacaaaag aatagctatt cttccagacg ggagtctacg gatcctaaat gcttccaaat
1921 cagacgaggg aaagtacgtt tgccgagggg aaaacgtctt tggttctgct gaaattatag
1981 cttcgctatc tgtaaaagaa cctacaagga tagaacttac tcctaaaaga acagaattga
2041 cagtgggaga aagcattgtc cttaattgca aagcaattca cgatgctagt ttggatgtca
2101 ctttctactg gactctgaaa ggacagccta ttgatttcga ggaagagggt ggacattttg
2161 aaagcatcag ggcccaagca tcctctgcag atttaatgat caggaacatc cttctgatgc
2221 atgctgggag atatggctgc agggtacaga ccacagcaga cagtgtgtca gatgaggcag
2281 aacttcttgt taggggaccc ccaggcccac ctgggatagt aattgttgag gaaataaccg
2341 aaagtacggc cacactgtcc tggagcccag cagctgacaa ccacagccca atctcctcct
2401 acaaccttca agctcgcagc ccattttccc tgggctggca aacagtaaag acagtcccag
2461 aaatcataac aggggacatg gagtcagcca tggctgtgga cctaaatccc tgggtggaat
2521 atgaatttcg agtggtagcc accaacccta ttgggacagg agatccaagc accccatctc
2581 gaatgatccg cacaaatgaa gcagttccga agacagcacc caccaatgta agcggaagaa
2641 gtggaagaag gcatgagtta gtcattgcct gggagccagt atctgaagag tttcagaatg
2701 gggaaggctt cggctatatt gtggctttca gacccaatgg aacacgtggc tggaaggaaa
2761 aaatggtgac atcctctgaa gcttccaaat tcatttatcg agatgaaagt gtccctcctc
2821 ttactccctt tgaagtgaaa gttggcgttt ataacaataa aggagatggg ccttttagtc
2881 aaattgtggt catctgttca gctgaaggag aacccagtgc tgctcccaca gatgtcaagg
2941 cgacaagtgt gtctgtgtca gagattcttg ttgcatggaa acacattaaa gagagtctag
3001 gaagaccaca gggatttgag gttggttact ggaaagacat ggaacaggaa gatacagcag
3061 aaacagtcaa aactagaggg aatgagtctt tcgtcatcct aacaggatta gaaggaaata
3121 cgttatatca cttcacagtg agggcttaca atggagctgg atatgggcca cctagcagtg
3181 aagtgagtgc aaccaccaag aaatcccctc ctagtcaagc acctagcaac ctcaggtggg
3241 agcagcaagg ctctcaggtt tctctgggct gggaacccgt cataccatta gccaacgaat
3301 ctgaagttgt gggttacaag gttttttata ggcaagaggg tcacagcaac agccaagtta
3361 ttgaaacaca gaaacttcaa gcagtagtac cactcccaga tgctggagtc tatattattg
3421 aagttcgagc atatagtgaa ggaggagatg gaacagctag ttctcaaatt agggtaccat
3481 catattcagg tggaaaaatc acaagtgcac agtcgaccct tcactctctc tccacatctt
3541 cgtcatcagt caccttgctc ttggcattga tgattccttc aacttcctgg tgaaaactgc
3601 tgacttaatt tgcttttgtt tgctttagct tggtaacagc ggtgaataga gtgtagtgta
3661 agtggagaac caggatcctg agatgagctt gagctttaaa aacttgggac tatacatggt
3721 gaacttacag gaggttaggg gggaaatatt acttatccat caggtttctc tttggttttt
3781 gtaaacggag aggacagttc ttagtccagt aaaaatatgc agattgtatg taatgaattt
3841 ttgtaaacaa aggtaatttc tgtcaaatgt attctttact tttttaatat gttgggattt
3901 tattttatat ctgatgactc cgagtgtgtg ccatccatt
//