LOCUS BC144185 3800 bp mRNA linear HUM 02-JAN-2009
DEFINITION Homo sapiens contactin 5, mRNA (cDNA clone MGC:177722
IMAGE:9052705), complete cds.
ACCESSION BC144185
VERSION BC144185.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3800)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3800)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 17 Row: F Column: 15.
FEATURES Location/Qualifiers
source 1..3800
/db_xref="H-InvDB:HIT000502614"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177722 IMAGE:9052705"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_361"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: ATCCAAAC"
gene 1..3800
/gene="CNTN5"
/gene_synonym="HNB-2s"
/gene_synonym="NB-2"
/db_xref="GeneID:53942"
/db_xref="HGNC:HGNC:2175"
/db_xref="MIM:607219"
CDS 152..3454
/gene="CNTN5"
/gene_synonym="HNB-2s"
/gene_synonym="NB-2"
/codon_start=1
/product="CNTN5 protein"
/protein_id="AAI44186.1"
/db_xref="GeneID:53942"
/db_xref="HGNC:HGNC:2175"
/db_xref="MIM:607219"
/translation="MASSWKLMLFLSVTMCLSEYSKSLPGLSTSYAALLRIKKSSSSS
LFGSKTRPRYSSPSLGTLSASSPSWLGAAQNYYSPINLYHSSDAFKQDESVDYGPVFV
QEPDDIIFPTDSDEKKVALNCEVRGNPVPSYRWLRNGTEIDLESDYRYSLIDGTFIIS
NPSEAKDSGHYQCLATNTVGSILSREATLQFAYLGNFSGRTRSAVSVREGQGVVLMCS
PPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVT
NARVLSPPTPLTLRNDGVMGEYEPKIEVHFPFTVTAAKGTTVKMECFALGNPVPTITW
MKVNGYIPSKARLRKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHW
VEKLNDTQLDSGSPLRWECKATGKPRPTYRWLKNGVPLSPQSRVEMVNGVLMIHNVNQ
SDAGMYQCLAENKYGAIYASAELKILASAPTFALNQLKKTIIVTKDQEVVIECKPQGS
PKPTISWKKGDRAVRENKRIAVLPDGSLRILNASKSDEGKYVCRGENVFGSAEIIASL
SVKEPTRIELTPKRTELTVGESIVLNCKAIHDASLDVTFYWTLKGQPIDFEEEGGHFE
SIRAQASSADLMIRNILLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGIVIVEEI
TESTATLSWSPAADNHSPISSYNLQARSPFSLGWQTVKTVPEIITGDMESAMAVDLNP
WVEYEFRVVATNPIGTGDPSTPSRMIRTNEAVPKTAPTNVSGRSGRRHELVIAWEPVS
EEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSEASKFIYRDESVPPLTPFEVKVGVYNN
KGDGPFSQIVVICSAEGEPSAAPTDVKATSVSVSEILVAWKHIKESLGRPQGFEVGYW
KDMEQEDTAETVKTRGNESFVILTGLEGNTLYHFTVRAYNGAGYGPPSSEVSATTKKS
PPSQAPSNLRWEQQGSQVSLGWEPVIPLANESEVVGYKVFYRQEGHSNSQVIETQKLQ
AVVPLPDAGVYIIEVRAYSEGGDGTASSQIRVPSYSGGKITSAQSTLHSLSTSSSSVT
LLLALMIPSTSW"
BASE COUNT 1122 a 780 c 910 g 988 t
ORIGIN
1 gaactgtgct gatgggcagg aggatgggag acaggaattg agagtcacag aggaaggaca
61 gtggagtctg gcatcttatt gggcactctt taatgaagaa acaccagagc tgttaaacac
121 attgagacac agaagattct agtgactgag gatggcttcc tcttggaaac taatgctgtt
181 tctgtcagtc accatgtgtc tttcagagta ttcaaaatct cttcctggtc tctccacttc
241 atatgctgct ttgttaagaa ttaagaagag ttcatcttca tctctctttg gttccaaaac
301 cagaccacga tacagcagcc cttcattagg aacactgagt gcttcttcac ccagctggct
361 aggggcagct cagaattatt attcccccat caatctttat cattcctcag atgccttcaa
421 acaagatgaa agtgtggact atgggccagt ttttgtgcaa gaaccagatg atattatttt
481 tccaactgat tctgatgaaa agaaggtagc attgaattgt gaagttcgtg gcaatccagt
541 tcccagttac agatggcttc gaaatggaac agaaatagat ctggaaagtg attatcgcta
601 cagtttgata gatggcacct tcattataag caatccaagt gaagcaaagg attctggtca
661 ttatcagtgt ttagcaacca acactgtggg gagtattctt agtagagaag ctacactgca
721 gtttgcctat ctgggaaatt ttagtggccg gacaagaagt gcagtctctg tgagggaagg
781 ccagggtgtc gttctgatgt gctctcctcc gccacattca ccagagatca tctatagctg
841 ggtatttaat gagttccctt cctttgtggc ggaagacagc cggcggttca tctcccagga
901 gacaggcaac ctttatattt ctaaagtcca aacatcagat gttggcagct atatttgtct
961 ggtgaaaaac acagtgacga atgctagagt ccttagtcct ccaacgccac tcactctgcg
1021 taatgatggt gtgatgggag aatatgagcc gaaaattgag gtccattttc ctttcacggt
1081 tacagctgct aaaggaacaa ctgttaagat ggaatgcttt gcacttggca accccgttcc
1141 aacaatcaca tggatgaagg ttaatggtta tattcctagt aaggcacgtc tgcggaaatc
1201 tcaggcggtg ctggaaatac cgaatgtaca gctggatgat gcaggcattt atgagtgcag
1261 agctgaaaac tcacgtggaa aaaattcctt tcgtggacaa ttacaagtat acacctaccc
1321 acactgggta gaaaaactga atgatactca gttagacagt gggagccctc tccgatggga
1381 atgtaaggct actggaaaac ccagacccac gtatcgttgg ctgaagaatg gagtacccct
1441 ctcacctcag agtagggttg agatggttaa tggagtattg atgatccaca atgtgaatca
1501 atcagatgct ggaatgtatc agtgtttggc tgaaaataag tatggagcca tttacgctag
1561 tgctgagctg aagattctag cttcagctcc cacttttgca ctgaatcaac tgaagaaaac
1621 aataattgtt accaaagacc aagaagttgt catagagtgc aaaccccaag gctctccaaa
1681 accaaccatc tcttggaaga aaggagacag agcagttaga gaaaacaaaa gaatagctgt
1741 tcttccagac gggagtctac ggatcctaaa tgcttccaaa tcagacgagg gaaagtacgt
1801 ttgccgaggg gaaaacgtct ttggttctgc tgaaattata gcttcgctat ctgtaaaaga
1861 acctacaagg atagaactta ctcctaaaag aacagaattg acagtgggag aaagcattgt
1921 ccttaattgc aaagcaattc acgatgctag tttggatgtc actttctact ggactctgaa
1981 aggacagcct attgatttcg aggaagaggg tggacatttt gaaagcatca gggcccaagc
2041 atcctctgca gatttaatga tcaggaacat ccttctgatg catgctggga gatatggctg
2101 cagggtacag accacagcag acagtgtgtc agatgaggca gaacttcttg ttaggggacc
2161 cccaggccca cctgggatag taattgttga ggaaataacc gaaagtacgg ccacactgtc
2221 ctggagccca gcagctgaca accacagccc aatctcctcc tacaaccttc aagctcgcag
2281 cccattttcc ctgggctggc aaacagtaaa gacagtccca gaaatcataa caggggacat
2341 ggagtcagcc atggctgtgg acctaaatcc ctgggtggaa tatgaatttc gagtggtagc
2401 caccaaccct attgggacag gagatccaag caccccatct cgaatgatcc gcacaaatga
2461 agcagttccg aagacagcac ccaccaatgt aagcggaaga agtggaagaa ggcatgagtt
2521 agtcattgcc tgggagccag tatctgaaga gtttcagaat ggggaaggct tcggctatat
2581 tgtggctttc agacccaatg gaacacgtgg ctggaaggaa aaaatggtga catcctctga
2641 agcttccaaa ttcatttatc gagatgaaag tgtccctcct cttactccct ttgaagtgaa
2701 agttggcgtt tataacaata aaggagatgg gccttttagt caaattgtgg tcatctgttc
2761 agctgaagga gaacccagtg ctgctcccac agatgtcaag gcgacaagtg tgtctgtgtc
2821 agagattctt gttgcatgga aacacattaa agagagtcta ggaagaccac agggatttga
2881 ggttggttac tggaaagaca tggaacagga agatacagca gaaacagtca aaactagagg
2941 gaatgagtct ttcgtcatcc taacaggact agaaggaaat acgttatatc acttcacagt
3001 gagggcttac aatggagctg gatatgggcc acctagcagt gaagtgagtg caaccaccaa
3061 gaaatcccct cctagtcaag cacctagcaa cctcaggtgg gagcagcaag gctctcaggt
3121 ttctctgggc tgggaacccg tcataccatt agccaacgaa tctgaagttg tgggttacaa
3181 ggttttttat aggcaagagg gtcacagcaa cagccaagtt attgaaacac agaaacttca
3241 agcagtagta ccactcccag atgctggagt ctatattatt gaagttcgag catatagtga
3301 aggaggagat ggaacagcta gttctcaaat tagggtacca tcatattcag gtggaaaaat
3361 cacaagtgca cagtcgaccc ttcactctct ctccacatct tcgtcatcag tcaccttgct
3421 cttggcattg atgattcctt caacttcctg gtgaaaactg ctgacttaat ttgcttttgt
3481 ttgctttagc ttggtaacag cggtgaatag agtgtagtgt aagtggagaa ccaggatcct
3541 gagatgagct tgagctttaa aaacttggga ctatacatgg tgaacttaca ggaggttagg
3601 ggggaaatat tacttatcca tcaggtttct ctttggtttt tgtaaacgga gaggacagtt
3661 cttagtccag taaaaatatg cagattgtat gtaatgaatt tttgtaaaca aaggtaattt
3721 ctgtcaaatg tattctttac ttttttaata tgttgggatt ttattttata tctgatgact
3781 ccgagtgtgt gccatccatt
//