LOCUS BC144184 1786 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens nuclear receptor subfamily 1, group H, member 4, mRNA (cDNA clone MGC:177721 IMAGE:9052704), complete cds. ACCESSION BC144184 VERSION BC144184.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1786) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1786) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 17 Row: F Column: 5. FEATURES Location/Qualifiers source 1..1786 /db_xref="H-InvDB:HIT000502613" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:177721 IMAGE:9052704" /tissue_type="Pooled, cerebellum, kidney, placenta, testis, lung, colon, liver, heart, thyroid, bladder, uterus, PCR rescued clones" /clone_lib="NIH_MGC_361" /lab_host="DH10B" /note="Vector: pCR4-TOPO; Clone identification sequence tag: AATGTGCA" gene 1..1786 /gene="NR1H4" /gene_synonym="BAR" /gene_synonym="FXR" /gene_synonym="HRR-1" /gene_synonym="HRR1" /gene_synonym="RIP14" /db_xref="GeneID:9971" /db_xref="HGNC:HGNC:7967" /db_xref="MIM:603826" CDS 334..1764 /gene="NR1H4" /gene_synonym="BAR" /gene_synonym="FXR" /gene_synonym="HRR-1" /gene_synonym="HRR1" /gene_synonym="RIP14" /codon_start=1 /product="NR1H4 protein" /protein_id="AAI44185.1" /db_xref="GeneID:9971" /db_xref="HGNC:HGNC:7967" /db_xref="MIM:603826" /translation="MGSKMNLIEHSHLPTTDEFSFSENLFGVLTEQVAGPLGQNLEVE PYSQYSNVQFPQVQPQISSSSYYSNLGFYPQQPEEWYSPGIYELRRMPAETLYQGETE VAEMPVTKKPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAV YKCKNGGNCVMDMYMRRKCQECRLRKCREMGMLAECMYTGLLTEIQCKSKRLRKNVKQ HADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRMPQEITNK ILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL RSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAI VILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHH HAEMLMSWRVNDHKFTPLLCEIWDVQ" BASE COUNT 566 a 349 c 411 g 460 t ORIGIN 1 tcacctcatt gtctccccga cttatcctaa tgcgaaattg gattctgagc atttgtagca 61 aaatcgctgg gatctggaga ggaagactca gtccagaatc ctcccagggc cttgaaagtc 121 catctctgac ccaaaacaat ccaaggaggt agaagacatc gtagaaggag tgaaagaaga 181 aaagaagact tagaaacata gctcaaagtg aacactgctt ctcttagttt cctggatttc 241 ttctggacat ttcctcaaga tgaaacttca gacactttgg agtttttttt gaagaccacc 301 ataaagaaag tgcatttcaa ttgaaaaatt tggatgggat caaaaatgaa tctcattgaa 361 cattcccatt tacctaccac agatgaattt tctttttctg aaaatttatt tggtgtttta 421 acagaacaag tggcaggtcc tctgggacag aacctggaag tggaaccata ctcgcaatac 481 agcaatgttc agtttcccca agttcaacca cagatttcct cgtcatccta ttattccaac 541 ctgggtttct acccccagca gcctgaagag tggtactctc ctggaatata tgaactcagg 601 cgtatgccag ctgagactct ctaccaggga gaaactgagg tagcagagat gcctgtaaca 661 aagaagcccc gcatgggcgc gtcagcaggg aggatcaaag gggatgagct gtgtgttgtt 721 tgtggagaca gagcctctgg ataccactat aatgcactga cctgtgaggg gtgtaaaggt 781 ttcttcagga gaagcattac caaaaacgct gtgtacaagt gtaaaaacgg gggcaactgt 841 gtgatggata tgtacatgcg aagaaagtgt caagagtgtc gactaaggaa atgcagagag 901 atgggaatgt tggctgaatg tatgtataca ggcttgttaa ctgaaattca gtgtaaatct 961 aagcgactga gaaaaaatgt gaagcagcat gcagatcaga ccgtgaatga agacagtgaa 1021 ggtcgtgact tgcgacaagt gacctcgaca acaaagtcat gcagggagaa aactgaactc 1081 accccagatc aacagactct tctacatttt attatggatt catataacaa acagaggatg 1141 cctcaggaaa taacaaataa aattttaaaa gaagaattca gtgcagaaga aaattttctc 1201 attttgacgg aaatggcaac caatcatgta caggttcttg tagaattcac aaaaaagcta 1261 ccaggatttc agactttgga ccatgaagac cagattgctt tgctgaaagg gtctgcggtt 1321 gaagctatgt tccttcgttc agctgagatt ttcaataaga aacttccgtc tgggcattct 1381 gacctattgg aagaaagaat tcgaaatagt ggtatctctg atgaatatat aacacctatg 1441 tttagttttt ataaaagtat tggggaactg aaaatgactc aagaggagta tgctctgctt 1501 acagcaattg ttatcctgtc tccagataga caatacataa aggatagaga ggcagtagag 1561 aagcttcagg agccacttct tgatgtgcta caaaagttgt gtaagattca ccagcctgaa 1621 aatcctcaac actttgcctg tctcctgggt cgcctgactg aattacggac attcaatcat 1681 caccacgctg agatgctgat gtcatggaga gtaaacgacc acaagtttac cccacttctc 1741 tgtgaaatct gggacgtgca gtgatgggga ttacagggga ggggtc //