LOCUS BC144146 711 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3A, mRNA (cDNA clone MGC:177683 IMAGE:9052666),
complete cds.
ACCESSION BC144146
VERSION BC144146.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 711)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 711)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 17 Row: M Column: 4.
FEATURES Location/Qualifiers
source 1..711
/db_xref="H-InvDB:HIT000502576"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177683 IMAGE:9052666"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: GGTTCGTT"
gene 1..711
/gene="APOBEC3A"
/gene_synonym="ARP3"
/gene_synonym="bK150C2.1"
/gene_synonym="PHRBN"
/db_xref="GeneID:200315"
/db_xref="HGNC:HGNC:17343"
/db_xref="MIM:607109"
CDS 61..606
/gene="APOBEC3A"
/gene_synonym="ARP3"
/gene_synonym="bK150C2.1"
/gene_synonym="PHRBN"
/codon_start=1
/product="APOBEC3A protein"
/protein_id="AAI44147.1"
/db_xref="GeneID:200315"
/db_xref="HGNC:HGNC:17343"
/db_xref="MIM:607109"
/translation="MEASPASGPRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNL
LCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV
RLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDG
LDEHSQALSGRLRAILQNQGN"
BASE COUNT 170 a 201 c 200 g 140 t
ORIGIN
1 gccttgagca agtcgcaaga gcgggaggac acagaccagg aaccgagaag ggacaagcac
61 atggaagcca gcccagcatc cgggcccagg cataagacct acctgtgcta cgaagtggag
121 cgcctggaca atggcacctc ggtcaagatg gaccagcaca ggggctttct acacaaccag
181 gctaagaatc ttctctgtgg cttttacggc cgccatgcgg agctgcgctt cttggacctg
241 gttccttctt tgcagttgga cccggcccag atctacaggg tcacttggtt catctcctgg
301 agcccctgct tctcctgggg ctgtgccggg gaagtgcgtg cgttccttca ggagaacaca
361 cacgtgagac tgcgtatctt cgctgcccgc atctatgatt acgaccccct atataaggag
421 gcactgcaaa tgctgcggga tgctggggcc caagtctcca tcatgaccta cgatgaattt
481 aagcactgct gggacacctt tgtggaccac cagggatgtc ccttccagcc ctgggatgga
541 ctagatgagc acagccaagc cctgagtggg aggctgcggg ccattctcca gaatcaggga
601 aactgaagga tgggcctcag tctctaagga aggcagagac ctgggttgag cagcagaata
661 aaagatcttc ttccaagaaa tgcaaacaga ccgttcacca ccatctccag c
//