LOCUS BC144102 5108 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens jumonji, AT rich interactive domain 1D, mRNA (cDNA
clone MGC:177639 IMAGE:9052622), complete cds.
ACCESSION BC144102
VERSION BC144102.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5108)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5108)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 17 Row: A Column: 18.
FEATURES Location/Qualifiers
source 1..5108
/db_xref="H-InvDB:HIT000502532"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177639 IMAGE:9052622"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_364"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: GGCATTAC"
gene 1..5108
/gene="JARID1D"
/gene_synonym="KDM5D"
/db_xref="GeneID:8284"
/db_xref="HGNC:HGNC:11115"
/db_xref="MIM:426000"
CDS 212..4924
/gene="JARID1D"
/gene_synonym="KDM5D"
/codon_start=1
/product="JARID1D protein"
/protein_id="AAI44103.1"
/db_xref="GeneID:8284"
/db_xref="HGNC:HGNC:11115"
/db_xref="MIM:426000"
/translation="MEPGCDEFLPPPECPVFEPSWAEFQDPLGYIAKIRPIAEKSGIC
KIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKI
PNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGSLLRSHYERI
IYPYEMFQSGANHVQCNTHPFDNEVKDKEYKPHSIPLRQSVQPSKFSSYSRRAKRLQP
DPEPTEEDIEKHPELKKLQIYGPGPKMMGLGLMAKDKDKTVHKKVTCPPTVTVKDEQS
GGGNVSSTLLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRGDEDDKLLFCDG
CDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMAD
SFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQ
NLSPEEKRQSLTVLTRLISSFWAQAVLPPWPPKVLGLQEYATSGWNLNVMPVLDQSVL
CHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHL
EEVMKMLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHS
GFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAAFPETLDLN
LAVAVHKEMFIMVQEERRLRKALLEKGVTEAEREAFELLPDDERQCIKCKTTCFLSAL
ACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPTMLHKLKIRAESFDTWANKV
RVALEVEDGRKRSFEELRALESEARERRFPNSELLQRLKNCLSEVEACIAQVLGLVSG
QVARMDTPQLTLTELRVLLEQMGSLPCAMHQIGDVKDVLEQVEAYQAEAREALATLPS
SPGLLRSLLERGQQLGVEVPEAHQLQQQVEQAQWLDEVKQALAPSAHRGSLVIMQGLL
VMGAKIASSPSVDKARAELQELLTIAERWEEKAHFCLEARQKHPPATLEAIIRETENI
PVHLPNIQALKEALTKAQAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQ
LELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKALGLYQC
DTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLAPSLMASSPTS
ICVCGQVPAGVGVLQCDLCQDWFHGQCVSVPHLLTSPKPSLTSSPLLAWWEWDTKFLC
PLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAIGWQDRARKALASEDVT
ALLRQLAELRQQLQAKPRPEEASVYTSATACDPIREGSGNNISKVQGLLENGDSVTSP
ENMAPGKGSDLELLSSLLPQLTGPVLELPEAIRAPLEELMMEGDLLEVTLDENHSIWQ
LLQAGQPPDLDRIRTLLELEKFEHQGSRTRSRALERRRRRQKVDQGRNVENLVQQELQ
SKRARSSGIMSQVGREEEHYQEKADRENMFLTPSTDHSPFLKGNQNSLQHKDSGSSAA
CPSLMPLLQLSYSDEQQL"
BASE COUNT 1228 a 1272 c 1406 g 1202 t
ORIGIN
1 gcgacggctc tgtgactgtt ttcctctggt aaaatcgctc ttgcgtcctc agcgtttatc
61 tcaggtgcgg aaggtctcac aggtttggaa atagcgccgg aaaaatcgat ccgcggagtg
121 agacggctcg taccacactg cagggcccgg aggtcaagat ggtggctgta aaactaggat
181 ccctgacgat tgcttagcat taaggcccga catggaaccg gggtgtgacg agttcctgcc
241 gccaccggag tgcccggttt ttgagcctag ctgggctgaa ttccaagacc cgcttggcta
301 cattgcgaaa ataaggccca tagcagagaa gtctggcatc tgcaaaatcc gcccacccgc
361 ggattggcag cctccttttg cagtagaagt tgacaatttc agatttactc ctcgcgtcca
421 aaggctaaat gaactggagg cccaaactag agtgaaattg aactatttgg atcagattgc
481 aaaattctgg gaaattcaag gctcctcttt aaagattccc aatgtggagc ggaagatctt
541 ggacctctac agccttagta agattgtgat tgaggaaggt ggctatgaag ccatctgcaa
601 ggatcgtcgg tgggctcgag ttgcccagcg tctccactac ccaccaggca aaaacattgg
661 ctccctgcta cgatcacatt acgaacgcat tatttacccc tatgaaatgt ttcagtctgg
721 agccaaccat gtgcaatgta acacacaccc gtttgacaat gaggtaaaag ataaggaata
781 caagccccac agcatccccc ttagacagtc tgtgcagcct tcaaagttca gcagctacag
841 tcgacgggca aaaaggctac agcctgatcc agagcctaca gaggaggaca ttgagaagca
901 tccagagcta aagaagttac agatatatgg gccaggtccc aaaatgatgg gcttgggcct
961 tatggctaag gataaggata agactgtgca taagaaagtc acatgccccc caactgttac
1021 ggtgaaggat gagcaaagtg gaggtgggaa cgtgtcatca acattgctca agcagcactt
1081 gagcctagag ccctgcacta agacaaccat gcaacttcga aagaatcaca gcagtgccca
1141 gtttattgac tcatatattt gccaagtatg ctcccgtggg gatgaagatg ataagcttct
1201 tttctgtgat ggctgtgatg acaattacca catcttctgc ttgttaccac cccttcctga
1261 aatccccaga ggcatctgga ggtgcccaaa atgtatcttg gcggagtgta aacagcctcc
1321 tgaagctttt ggatttgaac aggctaccca ggagtacagt ttgcagagtt ttggtgaaat
1381 ggctgattcc ttcaagtccg actacttcaa catgcctgta catatggtgc ctacagaact
1441 tgtagagaag gaattctgga ggctggtgag cagcattgag gaagacgtga cagttgaata
1501 tggagctgat attcattcca aagaatttgg cagtggcttt cctgtcagca atagcaaaca
1561 aaacttatct cctgaggaga agagacaaag tctcactgtg ttgaccaggc tgatctcaag
1621 cttctgggct caagcagtcc tcccaccttg gcctcccaaa gtgttgggat tacaggagta
1681 tgcgaccagt ggttggaacc tgaatgtgat gccagtgcta gatcagtctg ttctctgtca
1741 catcaatgca gacatctcag gcatgaaggt gccctggctg tacgtgggca tggttttctc
1801 agcattttgt tggcatattg aggatcactg gagttactct attaactatc tgcattgggg
1861 tgagccgaag acctggtatg gtgtaccctc cctggcagca gagcatttgg aggaggtgat
1921 gaagatgctg acacctgagc tgtttgatag ccagcctgat ctcctacacc agcttgtcac
1981 tctcatgaat cccaacactt tgatgtccca tggtgtgcca gttgtccgca caaaccagtg
2041 tgcaggggag tttgtcatca cttttcctcg tgcttaccac agtggtttta accaaggcta
2101 caattttgct gaagctgtca acttttgtac tgctgactgg ctacctgctg gacgccagtg
2161 cattgaacac taccgccggc tccggcgcta ttgtgtcttc tcccacgagg agctcatctg
2221 caagatggct gccttcccag agacgttgga tctcaatcta gcagtagctg tgcacaagga
2281 gatgttcatt atggttcagg aggagcgacg tctacgaaag gcccttttgg agaagggcgt
2341 cacggaggct gagcgagagg cttttgagct gctcccagat gatgaacgcc agtgcatcaa
2401 gtgcaagacc acgtgcttct tgtcagccct ggcctgctac gactgcccag atggccttgt
2461 atgcctttcc cacatcaatg acctctgcaa gtgctctagt agccgacagt acctccggta
2521 tcggtacacc ttggatgagc tccccaccat gctgcataaa ctgaagattc gggctgagtc
2581 ttttgacacc tgggccaaca aagtgcgagt ggccttggag gtggaggatg gccgtaaacg
2641 cagctttgaa gagctaaggg cactggagtc tgaggctcgt gagaggaggt ttcctaatag
2701 tgagctgctt cagcgactga agaactgcct gagtgaggtg gaggcttgta ttgctcaagt
2761 cctggggctg gtcagtggtc aggtggccag gatggacact ccacagctga ccttgactga
2821 actccgggtc cttcttgagc agatgggcag cctgccctgt gccatgcatc agattgggga
2881 tgtcaaggat gtcctggaac aggtggaggc ctatcaagct gaggctcgtg aggctctggc
2941 cacactgccc tctagtccag ggctattgcg gtccctgttg gagagggggc agcagctggg
3001 tgtagaggtg cctgaagccc atcagcttca gcagcaggtg gagcaggcgc aatggctaga
3061 tgaagtgaag caggccctgg ccccttctgc tcacaggggc tctctggtca tcatgcaggg
3121 gcttttggtt atgggtgcca agatagcctc cagcccttct gtggacaagg cccgggctga
3181 gctgcaagaa ctactgacca ttgcagagcg ctgggaagaa aaggctcatt tctgcctgga
3241 ggccaggcag aagcatccac cagccacatt ggaagccata attcgtgaga cagaaaacat
3301 ccctgttcac ctgcctaaca tccaggctct caaagaagct ctgactaagg cacaagcttg
3361 gattgctgat gtggatgaga tccaaaatgg tgaccactac ccctgtctag atgacttgga
3421 gggcctggtg gctgtgggcc gggacctgcc tgtggggctg gaagagctga gacagctaga
3481 gctgcaggta ttgacagcac attcctggag agagaaggcc tccaagacct ttctcaagaa
3541 gaattcttgc tacacactgc ttgaggtgct ttgcccgtgt gcagacgctg gctcagacag
3601 caccaagcgt agccggtgga tggagaaggc gctggggttg taccagtgtg acacagagct
3661 gctggggctg tctgcacagg acctcagaga cccaggctct gtgattgtgg ccttcaagga
3721 aggggaacag aaggagaagg agggtatcct gcagctgcgt cgcaccaact cagccaagcc
3781 cagtccactg gcaccatccc tcatggcctc ttctccgact tctatctgtg tgtgtgggca
3841 ggtgccagct ggggtgggag ttctgcagtg tgacctgtgt caggactggt tccatgggca
3901 gtgtgtgtca gtgccccatc tcctcacctc tccaaagccc agtctcactt catctccact
3961 gctagcctgg tgggaatggg acacaaaatt cctgtgtcca ctgtgtatgc gctcacgacg
4021 gccacgccta gagacaatcc tagccttgct ggttgccctg cagaggctgc ccgtgcggct
4081 gcctgagggt gaggcccttc agtgtctcac agagagggcc attggctggc aagaccgtgc
4141 cagaaaggct ctggcctctg aagatgtgac tgctctgttg cgacagctgg ctgagcttcg
4201 ccaacagcta caggccaaac ccagaccaga ggaggcctca gtctacactt cagccactgc
4261 ctgtgaccct atcagagaag gcagtggcaa caatatttct aaggtccaag ggctgctgga
4321 gaatggagac agtgtgacca gtcctgagaa catggctcca ggaaagggct ctgacctgga
4381 gctactgtcc tcactgttgc cgcagttgac tggccctgtg ttggagctgc ctgaggcaat
4441 ccgggctccc ctggaggagc tcatgatgga aggggacctg cttgaggtga ccctggatga
4501 gaaccacagc atctggcagc tgctgcaggc tggacagcct ccagacctgg acagaattcg
4561 cacacttctg gagctggaaa aatttgaaca tcaagggagt cggacaagga gccgggctct
4621 ggagaggcga cggcggcggc agaaggtgga tcagggtaga aacgttgaga atcttgttca
4681 acaggagctt cagtcaaaaa gggctcggag ctcagggatt atgtctcagg tgggccgaga
4741 agaagaacat tatcaggaga aagcagaccg tgaaaatatg ttcctgacac cttccacaga
4801 ccacagccct ttcttgaaag gaaaccaaaa tagcttacaa cacaaggatt caggctcttc
4861 agctgcttgt ccttctttaa tgcctttgct acaactctcc tactctgatg agcaacagtt
4921 gtgacagtgg caccaaaggt catttgtggt tgtttttgtt tgtttgtttc ttaaatccta
4981 ctatctcctg gcctggacct cagaaggagc tttttgctta tctataattt ttcactgcca
5041 atttttgata tcctctctcc tagagttact gttaaaaggt tggttcgtaa agtccacacc
5101 ccgatgct
//