LOCUS BC144100 4247 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens integrin, alpha V (vitronectin receptor, alpha
polypeptide, antigen CD51), mRNA (cDNA clone MGC:177637
IMAGE:9052620), complete cds.
ACCESSION BC144100
VERSION BC144100.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4247)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4247)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 17 Row: A Column: 12.
FEATURES Location/Qualifiers
source 1..4247
/db_xref="H-InvDB:HIT000502530"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177637 IMAGE:9052620"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_364"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: CCAAGCAT"
gene 1..4247
/gene="ITGAV"
/gene_synonym="CD51"
/db_xref="GeneID:3685"
/db_xref="HGNC:HGNC:6150"
/db_xref="MIM:193210"
CDS 130..3168
/gene="ITGAV"
/gene_synonym="CD51"
/codon_start=1
/product="ITGAV protein"
/protein_id="AAI44101.1"
/db_xref="GeneID:3685"
/db_xref="HGNC:HGNC:6150"
/db_xref="MIM:193210"
/translation="MAFPPRRRLRLGPRGLPLLLSGLLLPLCRAFNLDVDSPAEYSGP
EGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEF
DATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFL
QDGTKTVEYAPCRSRQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGY
SVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAA
TDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARF
GSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAAR
SMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQ
DNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFL
YSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTT
GLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSDQKKIYIGDDNPLTLIVK
AQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCALKTENQTRQVVCDLGNPMK
AGTQLLAGLRFSVHQQSEMDTSVKFDLQIQSSNLFDKVSPVVSHKVDLAVLAAVEIRG
VSSPDHIFLPIPNWEHKENPETEEDVGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYN
NNTLLYILHYDIDGPMNCTSDMEINPLRIKISSLQTTEKNDTVAGQGERDHLITKRDL
ALSEGDIHTLGCGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTETFMNKENQNHSYSL
KSSASFNVIEFPYKNLPIEDITNSTLVTTNVTWGIQPAPMPVPVWVIILAVLAGLLLL
AVLVFVMYRMGFFKRVRPPQEEQEREQLQPHENGEGNSET"
BASE COUNT 1192 a 846 c 936 g 1273 t
ORIGIN
1 ctagccgaga agagagcggc cggcaagttt gggcgcgcgc aggcggcggg ccgcgggcac
61 tgggcgcctc gctggggcgg ggggaggtgg ctaccgctcc cggcttggcg tcccgcgcgc
121 acttcggcga tggcttttcc gccgcggcga cggctgcgcc tcggtccccg cggcctcccg
181 cttcttctct cgggactcct gctacctctg tgccgcgcct tcaacctaga cgtggacagt
241 cctgccgagt actctggccc cgagggaagt tacttcggct tcgccgtgga tttcttcgtg
301 cccagcgcgt cttcccggat gtttcttctc gtgggagctc ccaaagcaaa caccacccag
361 cctgggattg tggaaggagg gcaggtcctc aaatgtgact ggtcttctac ccgccggtgc
421 cagccaattg aatttgatgc aacaggcaat agagattatg ccaaggatga tccattggaa
481 tttaagtccc atcagtggtt tggagcatct gtgaggtcga aacaggataa aattttggcc
541 tgtgccccat tgtaccattg gagaactgag atgaaacagg agcgagagcc tgttggaaca
601 tgctttcttc aagatggaac aaagactgtt gagtatgctc catgtagatc acgtcagctt
661 atttcggatc aagtggcaga aatcgtatct aaatacgacc ccaatgttta cagcatcaag
721 tataataacc aattagcaac tcggactgca caagctattt ttgatgacag ctatttgggt
781 tattctgtgg ctgtcggaga tttcaatggt gatggcatag atgactttgt ttcaggagtt
841 ccaagagcag caaggacttt gggaatggtt tatatttatg atgggaagaa catgtcctcc
901 ttatacaatt ttactggcga gcagatggct gcatatttcg gattttctgt agctgccact
961 gacattaatg gagatgatta tgcagatgtg tttattggag cacctctctt catggatcgt
1021 ggctctgatg gcaaactcca agaggtgggg caggtctcag tgtctctaca gagagcttca
1081 ggagacttcc agacgacaaa gctgaatgga tttgaggtct ttgcacggtt tggcagtgcc
1141 atagctcctt tgggagatct ggaccaggat ggtttcaatg atattgcaat tgctgctcca
1201 tatgggggtg aagataaaaa aggaattgtt tatatcttca atggaagatc aacaggcttg
1261 aacgcagtcc catctcaaat ccttgaaggg cagtgggctg ctcgaagcat gccaccaagc
1321 tttggctatt caatgaaagg agccacagat atagacaaaa atggatatcc agacttaatt
1381 gtaggagctt ttggtgtaga tcgagctatc ttatacaggg ccagaccagt tatcactgta
1441 aatgctggtc ttgaagtgta ccctagcatt ttaaatcaag acaataaaac ctgctcactg
1501 cctggaacag ctctcaaagt ttcctgtttt aatgttaggt tctgcttaaa ggcagatggc
1561 aaaggagtac ttcccaggaa acttaatttc caggtggaac ttcttttgga taaactcaag
1621 caaaagggag caattcgacg agcactgttt ctctacagca ggtccccaag tcactccaag
1681 aacatgacta tttcaagggg gggactgatg cagtgtgagg aattgatagc gtatctgcgg
1741 gatgaatctg aatttagaga caaactcact ccaattacta tttttatgga atatcggttg
1801 gattatagaa cagctgctga tacaacaggc ttgcaaccca ttcttaacca gttcacgcct
1861 gctaacatta gtcgacaggc tcacattcta cttgactgtg gtgaagacaa tgtctgtaaa
1921 cccaagctgg aagtttctgt agatagtgat caaaagaaga tctatattgg ggatgacaac
1981 cctctgacat tgattgttaa ggctcagaat caaggagaag gtgcctacga agctgagctc
2041 atcgtttcca ttccactgca ggctgatttc atcggggttg tccgaaacaa tgaagcctta
2101 gcaagacttt cctgtgcact taagacagaa aaccaaactc gccaggtggt atgtgacctt
2161 ggaaacccaa tgaaggctgg aactcaactc ttagctggtc ttcgtttcag tgtgcaccag
2221 cagtcagaga tggatacttc tgtgaaattt gacttacaaa tccaaagctc aaatctattt
2281 gacaaagtaa gcccagttgt atctcacaaa gttgatcttg ctgttttagc tgcagttgag
2341 ataagaggag tctcgagtcc tgatcatatc tttcttccga ttccaaactg ggagcacaag
2401 gagaaccctg agactgaaga agatgttggg ccagttgttc agcacatcta tgagctgaga
2461 aacaatggtc caagttcatt cagcaaggca atgctccatc ttcagtggcc ttacaaatat
2521 aataataaca ctctgttgta tatccttcat tatgatattg atggaccaat gaactgcact
2581 tcagatatgg agatcaaccc tttgagaatt aagatctcat ctttgcaaac aactgaaaag
2641 aatgacacgg ttgccgggca aggtgagcgg gaccatctca tcactaagcg ggatcttgcc
2701 ctcagtgaag gagatattca cactttgggt tgtggagttg ctcagtgctt gaagattgtc
2761 tgccaagttg ggagattaga cagaggaaag agtgcaatct tgtacgtaaa gtcattactg
2821 tggactgaga cttttatgaa taaagaaaat cagaatcatt cctattctct gaagtcgtct
2881 gcttcattta atgtcataga gtttccttat aagaatcttc caattgagga tatcaccaac
2941 tccacattgg ttaccactaa tgtcacctgg ggcattcagc cagcgcccat gcctgtgcct
3001 gtgtgggtga tcattttagc agttctagca ggattgttgc tactggctgt tttggtattt
3061 gtaatgtaca ggatgggctt ttttaaacgg gtccggccac ctcaagaaga acaagaaagg
3121 gagcagcttc aacctcatga aaatggtgaa ggaaactcag aaacttaact gcagttttta
3181 agttatgcta catcttgacc cactagaatt agcaacttta ttatagattt aaactttctt
3241 catgaggagt aaaaatccaa ggctttactg ctgatagtgc taattggcat taaccacaaa
3301 atgagaatta tatttgtcaa ccttctcctt ataaataagt tcagacatac atttaataac
3361 atagggtgac ttgtgttttt aggtatttaa ataataaaat ttcaagggat agtttttatt
3421 caatgtatat aagacaggta gtgcctgatt tactacttta tataaaatag tacctccttc
3481 agttactgtt tctgatttaa tgtacggaac tttatttgtt gttgttgttg ttgttgttgt
3541 tgttgtttta aagcagtcca aatttggacc ttagcaatca tgtcttttgt ataggtactt
3601 aatgttaata catattacac tacagtttac ttttcagaat actaaagact ttataactgc
3661 atgaacttgg atttttttaa tcactcatat ggtagaattt tataaacaca tacatgatac
3721 catccaaatt cttgctttta ataacaaagg tacaatattt tgttttagta tgaaaatctg
3781 gtagatccta ttacacttct gtttatatta aatccacaat attttattac atttttaact
3841 tgtataaatt ttaggtcaaa tccttcaagc caacctatac taaaaattag ttccataatc
3901 acaaatggct cttttgtgta attgtttaat ttcacctgaa tatcataatg cttaaagcca
3961 tatggagttg gaaattattt ccaaagcata tttattccat tgttttagtc tggctattta
4021 cagtataaaa aaagcatttt tattaaaata ctgtgtagtt ctttgagata gttgcttatg
4081 catatagtaa gtattacatt cttagagtag agcagagttt ttagttagta ttaatttatt
4141 ttcctccatt catgtacttt tccttatatt tccaaaactg ttactgagaa tgggtcaaga
4201 tcagtgagaa atctttacag ttgacaggaa cctggacccc ttacccc
//