LOCUS BC144076 6084 bp mRNA linear HUM 08-JAN-2009
DEFINITION Homo sapiens LIM domain containing preferred translocation partner
in lipoma, mRNA (cDNA clone MGC:177613 IMAGE:9052596), complete
cds.
ACCESSION BC144076
VERSION BC144076.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6084)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6084)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 17 Row: M Column: 7.
FEATURES Location/Qualifiers
source 1..6084
/db_xref="H-InvDB:HIT000502509"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177613 IMAGE:9052596"
/tissue_type="Lung, PCR rescued clones"
/clone_lib="NIH_MGC_301"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: ATAGTCCA"
gene 1..6084
/gene="LPP"
/db_xref="GeneID:4026"
/db_xref="HGNC:HGNC:6679"
/db_xref="MIM:600700"
CDS 106..1944
/gene="LPP"
/codon_start=1
/product="LPP protein"
/protein_id="AAI44077.1"
/db_xref="GeneID:4026"
/db_xref="HGNC:HGNC:6679"
/db_xref="MIM:600700"
/translation="MSHPSWLPPKSTGEPLGHVPARMETTHSFGNPSISVSTQQPPKK
FAPVVAPKPKYNPYKQPGGEGDFLPPPPPPLDDSSALPSISGNFPPPPPLDEEVFKVQ
GNPGGKTLEERRSSLDAEIDSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTG
HKRMVIPNQPPLTATKKSTLKPQPAPQAGPIPVAPIGTLKPQPQPVPASYTTASTSSR
PTFNVQVKSAQPSPHYMAAPSSGQIYGSGPQGYNTQPVPVSGQCPPPSTRGGMDYAYI
PPPGLQPEPGYGYAPNQGRYYEGYYAAGPGYGGRNDSDPTYGQQGHPNTWKREPGYTP
PGAGNQNPPGMYPVTGPKKTYITDPVSAPCAPPLQPKGGHSGQLGPSSVAPSFRPEDE
LEHLTKKMLYDMENPPADEYFGRCARCGENVVGEGTGCTAMDQVFHVDCFTCIICNNK
LRGQPFYAVEKKAYCEPCYINTLEQCNVCSKPIMERILRATGKAYHPHCFTCVMCHRS
LDGIPFTVDAGGLIHCIEDFHKKFAPRCSVCKEPIMPAPGQEETVRIVALDRDFHVHC
YRCEDCGGLLSEGDNQGCYPLDGHILCKTCNSARIRVLTAKASTDL"
BASE COUNT 1768 a 1328 c 1156 g 1832 t
ORIGIN
1 ctggacgctc atcagaggga agatcttttt cctcaattgc attgcagttg gctgaacctt
61 gtgtcaacca tccattccag gagccagcta tctgagattc caacaatgtc tcacccatct
121 tggctgccac ccaaaagcac tggtgagccc ctcggccatg tgcctgcacg gatggagacc
181 acccattcct ttgggaaccc cagcatttca gtgtctacac aacagccacc caaaaagttt
241 gccccggtag ttgctccaaa acctaagtac aacccataca aacaacctgg aggtgagggt
301 gattttcttc cacccccacc tccacctcta gatgattcca gtgcccttcc atctatctct
361 ggaaactttc ctcctccacc acctcttgat gaagaggttt tcaaagtaca ggggaatccc
421 ggaggcaaga cacttgagga gaggcgctcc agcctggacg ctgagattga ctccttgacc
481 agcatcttgg ctgaccttga gtgcagctcc ccctataagc ctcggcctcc acagagctcc
541 actggttcaa cagcctctcc tccagtttcg accccagtca caggacacaa gagaatggtc
601 atcccgaacc aaccccctct aacagcaacc aagaagtcta cattgaaacc acagcctgca
661 ccccaggctg gacccatccc tgtggctcca atcggaacac tcaaacccca gcctcagcca
721 gtcccagcct cctacaccac ggcctccact tcttcaaggc ctacctttaa tgtgcaggtg
781 aagtcagccc agcccagccc tcattatatg gctgcccctt catcaggaca aatttatggc
841 tcagggcccc agggctataa cactcagcca gttcctgtct ctgggcagtg tccacctcct
901 tcaacacggg gaggcatgga ttatgcctac attccaccac caggacttca gccggagcct
961 gggtatgggt atgcccccaa ccagggacgc tattatgaag gctactatgc agcagggcca
1021 ggctatgggg gcagaaatga ctctgaccct acctatggtc aacaaggtca cccaaatacc
1081 tggaaacggg aaccagggta cactcctcct ggagcaggga accagaaccc tcctgggatg
1141 tatccagtca ctggtcccaa gaagacctat atcacagatc ctgtttcagc cccctgtgcg
1201 ccaccattgc agccaaaggg tggccattca gggcaactgg ggccttcgtc agttgcccct
1261 tcattccgcc cagaggatga gcttgagcac ctgaccaaaa agatgctgta tgacatggaa
1321 aatccacctg ctgacgaata ctttggccgc tgtgctcgct gtggagaaaa cgtagttggg
1381 gaaggtacag gatgcactgc catggatcag gtcttccacg tggattgttt tacctgcatc
1441 atctgcaaca acaagctccg agggcagcca ttctatgctg tggaaaagaa agcatactgc
1501 gagccctgct acattaatac tctggagcag tgcaatgtgt gttccaagcc catcatggag
1561 cggattctcc gagccaccgg gaaggcctat catcctcact gtttcacctg cgtgatgtgc
1621 caccgcagcc tggatgggat cccattcact gtggatgctg gcgggctcat tcactgcatt
1681 gaggacttcc acaagaaatt tgccccgcgg tgttctgtgt gcaaggagcc tattatgcca
1741 gccccgggcc aggaggagac tgtccgtatt gtggctttgg atcgagattt ccatgttcac
1801 tgctaccgat gcgaggattg cggtggtctc ctgtctgaag gagataacca aggctgctac
1861 cccttggatg ggcacatcct ctgcaagacc tgcaactctg cccgcatcag ggtgttgacc
1921 gccaaggcga gcactgacct ttagattcag tcacctgttc agccggcact gagaagaacg
1981 aacacaagaa aaagataaga aatactagag taaaggccat caaactacgc gatagtctct
2041 gttcttcatc tgctattaac cttgccttag aaacacataa attatgagat tttttttaaa
2101 agttgttacc aaatacacat ttcacattga atcatgtagg atcttgatgg gcctttgttc
2161 ccaaggactt ccacattttt gcacagatta tgctccatcc cattcacttc tgcattcctg
2221 taacttttaa tccctatgtt tgtctcactt ttcatctggt tgaatggctt ttcttagtgt
2281 ggtatttgct gtcacatagt ttttcctggg tgagtctgcc aactcacagg tgcttttagg
2341 cttgaaatct ccatcctatc atttccgttt tgcctgtgac tgtaaagagt agccattctt
2401 ttcccatgta ttgaagagga tattcttctc ttgctttata ctactcacgt ccttggggag
2461 ggaaatgcac aatttttttt tgttaggctg taaagaattt aagctgtaaa ttacataagt
2521 tagaacaagc ccaaatttaa tttgcaacca tcagaattca gaatctatag tgaccagtga
2581 tcaaggctaa ttggaaaaga gttatcggcc catagctaat aagtagtgac agacaaccaa
2641 gcttcaatat ttttctaaag aaattacagg tgggatatgc tagaaaaggc attttggggt
2701 tatgtttaaa aaaacattat tgtcccacaa tattacctta agatttttct tttccgcact
2761 acctgaacat tgtaatacag acaaacttga tttcttctag aagataacat tttcaatact
2821 gtcccacttc tcatcttaaa aatattgtca tgtttattct aatatccaac acaactatca
2881 aaattgcctt tttctctaga ggatgaaggc tgtgaaaaaa ccgttcaaat tctcttcttt
2941 ttctttttta ttaccaggtc cattttgcct gacaattgca aatcagagca tacaaaataa
3001 aactgtgcag ttttgtttgg tttactttca aaagagtaga aagcttgaaa agattctgaa
3061 accacagttt cattattctc ataatccttc tgcaactgaa attacatatt gcaggagaca
3121 ttttcatatc atcaatgtga catttacacc acactttcaa agacaatcac tgaaacaaaa
3181 attgtcttta tgagctaaaa atatgcagaa tctctgccta gaatctttat tcaaactttt
3241 attagccagt gaaacacttg cttgccaact gccaagccat acttattaag ttcgaacatg
3301 tttcacttaa ggagagacac ctagcttagt catggcaagt tgccattttg taaactaagg
3361 attttggact gagatttctt aaatctttct tcaaatctcc cacaagtata tacttttaaa
3421 ttatggagta ttttaagtct acaaaaaggt ataaataata atataatgaa ttcctatata
3481 cctaataccc agtttaagac accaaatata acaagtataa ttacatcctc caatgtaccg
3541 tttccttatt ccacagatat ctttttcatt attgtgaagt gatgttcaga tttctagttt
3601 tttttctagt ttttaatttt aacatcagaa ctgaaataaa aaattatgga tacgtgtttt
3661 gaattgcaaa ctattcctca ggaattccaa ttaaatttat tttacttgaa taggaatgat
3721 cataaaagtg attctttttt tgtgactaga aattcttaag ccgatggtca ctatagctca
3781 tccttaatgt atggctcatt tgcttttgtc actaaacggt tttgtgttag aaccaccaaa
3841 attatagctt ttaagagctt cctttgacca ctgtcttttt cttaccctac ttctcttatc
3901 tttgatcgta tatttctcat aatgtgaaat atgatgagat tcacttaggg gcagcatgtt
3961 agttttggga ggcaatgtca actgtgtctc tgaattcctg tcttccaaat tgaagccaga
4021 ccatgctgat gacctcaagt agcactgact atttgacaat agggctgata atgtaatcgg
4081 cttgaatttt gacttagtaa ctttttatgt aatactttcg gagaaattct ctttaggaca
4141 aagcagagag tccaatttat tgagggatag attgtatctc ttaaagtggt catattatta
4201 ttaattttgc caaaagaaga agaatttatt gaatatttat actataaaat gcagtaacat
4261 tctacttgct tattacattt aaatccttgt gtaactgaat gtttacatgt caagaggaaa
4321 agctgtaaga aaatgctgtc acagacccat ccctgtggca tcgtcagcag aatactgctt
4381 gcttacaatc tttattatgc attcttataa cataacctca gagtatcttt accaaaggtt
4441 tttaaagtaa atctcctttt aagatagact tattctttta taataatgaa tgtgcactca
4501 tacatatgta gaaacattta gatttagagt tttttttttt ctttcacaag gtataataag
4561 gaaaggatcc tacaatattt tattctaggg tttcttaaat atatgattta tattactgtc
4621 ttttctatta atcatttgat ttaaacaatg ccaagtcact cttttttagt tgcatgaaat
4681 tttgcctgca acagagagaa aaagattgta ttactttaat gattataatc atactgtctg
4741 ctgatataat atcataattg ttgtggttta aatacataaa tagtagaaaa atcagagtct
4801 ataacagaaa gtttgtaaaa atatactgat tttgaaaagt atcaggaata taaatatttg
4861 gtaattctgt gtaacaagag agacatggaa aaggaaaaaa atccactata tcatgggctc
4921 tgcagaacat atcaaaatag gatttcttaa atttttcaac ccccagacca tactgactca
4981 acatggagtc tcactggcca agaaaattgc ctttaaaact cgaaaataag gccaggtgtg
5041 gtgactcaca cttgtaatcc cagcaatttg ggaggctgag acaggaggat tgcctgaggc
5101 caggagtttg acaccagcct gggcaacata gtgagacctt gtctctacaa aaaataaaat
5161 aaaataaaaa ccaaattagc cagacatggt ggcatgcgct tgtttaaaaa aacaaataaa
5221 taaataatcg actcaaaaat aagtcatgtg tcccagcata aggcatcagg ttgttagatg
5281 ctggcatctc tgcagctcaa agatgtgggt tctttttctt gtcattaaca cattgttatt
5341 tctgtaggag caacttctct gatcaaaatt acttttctgg gtatgtgctg attaaggggg
5401 tggacttatc aacactataa ttgttcccta tgaaagattc cacagagatg tttatggtga
5461 ggtttaaagg atatgaaact ctacatttaa acaagtattt tatatttggg tacagaggaa
5521 gaaagagagg gctttttcca tggggctata gtagagagtt agtggaatat agacaggact
5581 ctgaaaacac aacttccagc cattttttta gttagtaaaa atcctattaa tgtgaaccag
5641 ccaggaataa cagtgttatt tctattggat atggtttggg cttctcttgt caaatctgtg
5701 tcggctgccc cctgatcctt ccattatcaa gttttgaagg gtgttgggga aattatggca
5761 gctgctaggg agatcaggga aacactgatg taacctcaaa gcctctcacc attcctcttg
5821 gcttggaaag gctttatttt ttcatataca tttctagaaa tattgctatt ctaccttagt
5881 atttcacatt tgtagttcaa acaagcgatt gtccatctgt tgcctagagc tatagtacat
5941 gtgtgttatg aatgaaatat gacagcatgt tccatacccc tgctttagcc atctgtggga
6001 aaccagcaaa ctgaaaaaga cacctctgca aaatgtgcct caagtccatt tcttgggatc
6061 gctcgtttgg tgcactctcg tggg
//