LOCUS BC144019 3142 bp mRNA linear HUM 02-JAN-2009 DEFINITION Homo sapiens synaptonemal complex protein 1, mRNA (cDNA clone MGC:177556 IMAGE:9052539), complete cds. ACCESSION BC144019 VERSION BC144019.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3142) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3142) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 17 Row: C Column: 11. FEATURES Location/Qualifiers source 1..3142 /db_xref="H-InvDB:HIT000502455" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:177556 IMAGE:9052539" /tissue_type="Testis, PCR rescued clones" /clone_lib="NIH_MGC_374" /lab_host="DH10B" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: CCGCCGGC" gene 1..3142 /gene="SYCP1" /gene_synonym="HOM-TES-14" /gene_synonym="SCP1" /db_xref="GeneID:6847" /db_xref="HGNC:HGNC:11487" /db_xref="MIM:602162" CDS 121..3051 /gene="SYCP1" /gene_synonym="HOM-TES-14" /gene_synonym="SCP1" /codon_start=1 /product="synaptonemal complex protein 1" /protein_id="AAI44020.1" /db_xref="GeneID:6847" /db_xref="HGNC:HGNC:11487" /db_xref="MIM:602162" /translation="MEKQKPFALFVPPRSSSSQVSAVKPQTLGGDSTFFKSFNKCTED DFEFPFAKTNLSKNGENIDSDPALQKVNFLPVFEQVGNSDCHYQEGLKDSDLENSEGL SRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSL KLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNSNI EKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQIT EKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRS VSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLR TEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYEN KQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELEN EKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQ ETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKA LKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEV EKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQ EQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQT FLLETPEIYWKLDSKAVPSQTVSRNFTSVDHGISKDKRDYLWTSAKNTLSTPLPKAYT VKTPTKPKLQQRENLNIPIEESKKKRKMAFEFDINSDSSETTDLLSMVSEEETLKTLY RNNNPPASHLCVKTPKKAPSSLTTPGSTLKFGAIRKMREDRWAVIAKMDRKKKLKEAE KLFV" BASE COUNT 1348 a 458 c 616 g 720 t ORIGIN 1 cgggagccat tggttctttc tgttgccctc atagaccgta tgtagcagtt cgcgtgggca 61 cagaacccac ggtttcccgc tagttcttca aagtagatat ttacaaccgt aacagagaaa 121 atggaaaagc aaaagccctt tgcattgttc gtaccaccga gatcaagcag cagtcaggtg 181 tctgcggtga aacctcagac cctgggaggc gattccactt tcttcaagag tttcaacaaa 241 tgtactgaag atgattttga gtttccattt gcaaagacta atctctccaa aaatggggaa 301 aacattgatt cagatcctgc tttacaaaaa gttaatttct tgcccgtgtt tgagcaggtt 361 ggtaattctg actgtcacta tcaggaagga ctaaaagact ctgatttgga gaattcagag 421 ggattgagca gagtgtattc aaaactgtat aaggaggctg aaaagataaa aaaatggaaa 481 gtaagtacag aagctgaact gagacagaaa gaaagtaagt tgcaagaaaa cagaaagata 541 attgaagcac agcgaaaagc cattcaggaa ctgcaatttg gaaatgaaaa agtaagtttg 601 aaattagaag aaggaataca agaaaataaa gatttaataa aagagaataa tgccacaagg 661 catttatgta atctactcaa agaaacctgt gctagatctg cagaaaagac aaagaaatat 721 gaatatgaac gggaagaaac caggcaagtt tatatggatc taaatagtaa cattgagaaa 781 atgataacag cttttgagga acttcgtgtg caagctgaga attccagact ggaaatgcat 841 tttaagttaa aggaagatta tgaaaaaatc caacaccttg aacaagaata caagaaggaa 901 ataaatgaca aggaaaagca ggtatcacta ctattgatcc aaatcactga gaaagaaaat 961 aaaatgaaag atttaacatt tctgctagag gaatccagag ataaagttaa tcaattagag 1021 gaaaagacaa aattacagag tgaaaactta aaacaatcaa ttgagaaaca gcatcatttg 1081 actaaagaac tagaagatat taaagtgtca ttacaaagaa gtgtgagtac tcaaaaggct 1141 ttagaggaag atttacagat agcaacaaaa acaatttgtc agctaactga agaaaaagaa 1201 actcaaatgg aagaatctaa taaagctaga gctgctcatt cgtttgtggt tactgaattt 1261 gaaactactg tctgcagctt ggaagaatta ttgagaacag aacagcaaag attggaaaaa 1321 aatgaagatc aattgaaaat acttaccatg gagcttcaaa agaaatcaag tgagctggaa 1381 gagatgacta agcttacaaa taacaaagaa gtagaacttg aagaattgaa aaaagtcttg 1441 ggagaaaagg aaacactttt atatgaaaat aaacaatttg agaagattgc tgaagaatta 1501 aaaggaacag aacaagaact aattggtctt ctccaagcca gagagaaaga agtacatgat 1561 ttggaaatac agttaactgc cattaccaca agtgaacagt attattcaaa agaggttaaa 1621 gatctaaaaa ctgagcttga aaacgagaag cttaagaata ctgaattaac ttcacactgc 1681 aacaagcttt cactagaaaa caaagagctc acacaggaaa caagtgatat gaccctagaa 1741 ctcaagaatc agcaagaaga tattaataat aacaaaaagc aagaagaaag gatgttgaaa 1801 caaatagaaa atcttcaaga aacagaaacc caattaagaa atgaactaga atatgtgaga 1861 gaagagctaa aacagaaaag agatgaagtt aaatgtaaat tggacaagag tgaagaaaat 1921 tgtaacaatt taaggaaaca agttgaaaat aaaaacaagt atattgaaga acttcagcag 1981 gagaataagg ccttgaaaaa aaaaggtaca gcagaaagca agcaactgaa tgtttatgag 2041 ataaaggtca ataaattaga gttagaacta gaaagtgcca aacagaaatt tggagaaatc 2101 acagacacct atcagaaaga aattgaggac aaaaagatat cagaagaaaa tcttttggaa 2161 gaggttgaga aagcaaaagt aatagctgat gaagcagtaa aattacagaa agaaattgat 2221 aagcgatgtc aacataaaat agctgaaatg gtagcactta tggaaaaaca taagcaccaa 2281 tatgataaga tcattgaaga aagagactca gaattaggac tttataagag caaagaacaa 2341 gaacagtcat cactgagagc atctttggag attgaactat ccaatctcaa agctgaactt 2401 ttgtctgtta agaagcaact tgaaatagaa agagaagaga aggaaaaact caaaagagag 2461 gcaaaagaaa acacagctac tcttaaagaa aaaaaagaca agaaaacaca aacattttta 2521 ttggaaacac ctgaaattta ttggaaattg gattctaaag cagttccttc acaaactgta 2581 tctcgaaatt tcacatcagt tgatcatggc atatccaaag ataaaagaga ctatctgtgg 2641 acatctgcca aaaatacttt atctacacca ttgccaaagg catatacagt gaagacacca 2701 acaaaaccaa aactacagca aagagaaaac ttgaatatac ccattgaaga aagtaaaaaa 2761 aagagaaaaa tggcctttga atttgatatt aattcagata gttcagaaac tactgatctt 2821 ttgagcatgg tttcagaaga agagacattg aaaacactgt ataggaacaa taatccacca 2881 gcttctcatc tttgtgtcaa aacaccaaaa aaggcccctt catctctaac aacccctgga 2941 tctacactga agtttggagc tataagaaaa atgcgggagg accgttgggc tgtaattgct 3001 aaaatggata gaaaaaaaaa actaaaagaa gctgaaaagt tatttgttta atttcagaga 3061 atcagtgtag ttaaggagcc taataacgtg aaacttatag ttaatatttt gttcttattt 3121 gccagagcca aattttatct gg //