LOCUS BC143954 3564 bp mRNA linear HUM 08-JAN-2009 DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, mRNA (cDNA clone MGC:177489 IMAGE:9052472), complete cds. ACCESSION BC143954 VERSION BC143954.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3564) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3564) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 16 Row: B Column: 22. FEATURES Location/Qualifiers source 1..3564 /db_xref="H-InvDB:HIT000502393" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:177489 IMAGE:9052472" /tissue_type="Lung, PCR rescued clones" /clone_lib="NIH_MGC_299" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: CTGTACGG" gene 1..3564 /gene="SMARCA1" /gene_synonym="ISWI" /gene_synonym="NURF140" /gene_synonym="SNF2LB" /gene_synonym="SWI" /gene_synonym="SWI2" /db_xref="GeneID:6594" /db_xref="HGNC:HGNC:11097" /db_xref="MIM:300012" CDS 36..3248 /gene="SMARCA1" /gene_synonym="ISWI" /gene_synonym="NURF140" /gene_synonym="SNF2LB" /gene_synonym="SWI" /gene_synonym="SWI2" /codon_start=1 /product="SMARCA1 protein" /protein_id="AAI43955.1" /db_xref="GeneID:6594" /db_xref="HGNC:HGNC:11097" /db_xref="MIM:300012" /translation="MEQDTAAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAAT EATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQT ELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSE SRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQT IALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRD EMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTN RLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLK PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLL NILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIF SQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSS KFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLIT DNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKES ELTDEDITTILERGEKKTAEMNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKL GMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFE LLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAEPLTPEETEEKEKLLTQG FTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEK IMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLIC MLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEI EERERAEKKKRATKTPMSQKRKAESATESSGKKDVKKVKS" BASE COUNT 1154 a 649 c 816 g 945 t ORIGIN 1 tgccttgtcc ccctactcgt tcccgctccc acggcatgga gcaggacact gccgcagtgg 61 cagccaccgt ggcagccgcg gatgcgaccg ccactatcgt ggtcatagag gacgagcagc 121 ccgggccgtc cacctctcag gaggagggag cggccgccgc ggccaccgaa gccaccgcgg 181 ccacggagaa gggcgagaag aagaaggaga aaaacgtttc ttcatttcaa ctcaaacttg 241 ctgctaaagc gcctaaatct gaaaaggaaa tggacccaga atatgaagag aaaatgaaag 301 ccgaccgagc aaagagattt gaatttttac tgaagcagac agaacttttt gcacatttca 361 ttcagccttc agcacagaaa tctccaacat ctccactgaa catgaaattg ggacgtcccc 421 gaataaagaa agatgaaaag cagagcttaa tttctgctgg agactaccgc cataggcgca 481 cagagcaaga agaagatgaa gagctactgt ctgagagtcg gaaaacatct aatgtgtgta 541 ttagatttga ggtgtcacct tcatatgtga aaggggggcc actgagagat tatcagattc 601 gaggactgaa ttggttgatc tctttatatg aaaatggagt caatggcatt ttggctgatg 661 aaatgggcct tgggaaaact ttacaaacaa ttgctttgct tggttacctg aaacactacc 721 gaaatattcc tggacctcac atggttttag ttccaaagtc tactttacac aactggatga 781 atgaatttaa acgatgggtc ccatctctcc gtgtcatttg ttttgtcgga gacaaggatg 841 ccagagctgc ttttattcgt gatgaaatga tgccaggaga gtgggatgtt tgcgttactt 901 cttatgagat ggtaattaaa gaaaaatctg tattcaaaaa gtttcactgg cgatacctgg 961 tcattgatga agctcacaga ataaagaatg aaaaatctaa gctttcagag attgttcgtg 1021 agttcaagtc gactaaccgc ttgctcctaa ctggaacacc tttgcagaat aacctgcatg 1081 aactgtgggc cttactcaac tttttattgc ctgatgtctt taattctgca gatgactttg 1141 attcttggtt tgacactaaa aattgtcttg gtgatcaaaa actcgtggaa agacttcatg 1201 cagttttaaa accatttttg ttacgccgta taaaaactga tgtagagaag agtctgccac 1261 ctaaaaagga aataaagatt tacttggggc tgagtaagat gcaacgagaa tggtatacaa 1321 aaatcctgat gaaagatatt gatgttttaa actcttctgg caagatggac aagatgcgac 1381 tcttaaacat tctgatgcag cttcgaaagt gttgtaatca tccatatctg tttgatggtg 1441 ctgaacctgg tccaccttat accactgatg agcatattgt cagcaacagt ggtaaaatgg 1501 tagttctgga taaactattg gccaaactca aagaacaggg ttcaagggtt ctcattttca 1561 gccagatgac tcgcttgctg gatattttgg aagattattg catgtggcgt ggttatgagt 1621 attgtcgact ggatggacaa accccgcatg aagaaagaga ggataaattc ctagaagtgg 1681 aatttctggg tcaaagggaa gcaatagagg cttttaatgc tcctaatagt agcaaattca 1741 tctttatgct aagtaccagg gctggaggtc tcggaattaa cctggcaagt gctgatgtgg 1801 ttatactata tgattcagac tggaacccac aggttgatct acaagctatg gatcgagcac 1861 atcgtattgg tcagaagaaa ccagtacgtg tattccgtct catcactgac aacactgttg 1921 aagagaggat tgtagaaaga gctgagataa aactgagact cgattcaatt gttatacaac 1981 aaggaagact cattgaccaa cagtctaaca agctggcaaa agaggaaatg ttacaaatga 2041 tacggcatgg agccacccat gtttttgctt ctaaagagag tgagttgaca gatgaagaca 2101 ttacaactat tctggaaaga ggggaaaaga agactgcaga gatgaatgaa cgcctgcaaa 2161 aaatgggaga gtcttctcta agaaatttta gaatggacat tgaacaaagt ttatacaaat 2221 ttgagggaga agattataga gaaaaacaga agcttggcat ggtggaatgg attgaacctc 2281 ctaaacgaga acgcaaagca aactacgcag tggatgccta ctttagagag gctttgcgtg 2341 tcagcgagcc aaagattcca aaggctccac ggcctccaaa acagccaaat gttcaggatt 2401 ttcaattttt cccaccacgc ttatttgagc tcctggaaaa ggaaattctt tattatcgga 2461 agacaatagg ctataaggtt ccaaggaatc ctgatatccc aaatccagct ctggctcaaa 2521 gagaagagca aaaaaagatt gatggagctg aacctcttac accagaagag actgaagaaa 2581 aggaaaaact tctcacacaa ggtttcacaa actggactaa acgagatttt aaccagttta 2641 ttaaagctaa tgagaaatat ggaagagatg acattgataa catagctcga gaggtagagg 2701 gcaaatcccc tgaggaggtc atggagtatt cagctgtatt ttgggaacgt tgcaatgaat 2761 tacaggacat tgagaaaatt atggctcaaa ttgaacgtgg agaagcaaga attcaacgaa 2821 ggatcagtat caagaaagcc ctggatgcca aaattgcaag atacaaggct ccatttcatc 2881 agttgcgcat tcagtatgga accagcaaag gaaagaacta tactgaggaa gaagatagat 2941 tcttgatttg tatgttacac aaaatgggct ttgatagaga aaatgtatat gaagaattaa 3001 gacagtgtgt acgaaatgct ccccagttta gatttgactg gtttatcaag tctaggactg 3061 ccatggaatt ccagagacgc tgtaacactc tgatttcatt gattgagaaa gaaaatatgg 3121 aaattgagga aagagagaga gcagaaaaga agaaacgggc aactaaaact ccaatgtcac 3181 agaaaagaaa agcagagtca gctactgaga gctctggaaa gaaggatgtc aagaaggtga 3241 aatcctaaag cctagaaata aagttttaaa tgggaaactg ctattttctt gttcccatct 3301 tcaaatgcta attgccagtt ccagtgtatt catggtactc taagaaaaat ctctttggtt 3361 ttgatttctt gcatatttta tatattttac aatgctttct acctgaaatg tgtagcttta 3421 tattttatgg cattctagta tttttgtgta ctgtattttg tgcatttcat gtcttcatca 3481 aaatcctctc agtccttgtt cttttgaagc ttgtgctgag gttttagctt ttctatgttt 3541 tatatgccgc tgctttgaaa gaga //