LOCUS BC143952 3410 bp mRNA linear HUM 08-JAN-2009
DEFINITION Homo sapiens ecotropic viral integration site 1, mRNA (cDNA clone
MGC:177487 IMAGE:9052470), complete cds.
ACCESSION BC143952
VERSION BC143952.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3410)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3410)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 16 Row: B Column: 20.
FEATURES Location/Qualifiers
source 1..3410
/db_xref="H-InvDB:HIT000502391"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177487 IMAGE:9052470"
/tissue_type="Lung, PCR rescued clones"
/clone_lib="NIH_MGC_298"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: TTTCACTA"
gene 1..3410
/gene="EVI1"
/gene_synonym="AML1-EVI-1"
/gene_synonym="EVI-1"
/gene_synonym="MDS1-EVI1"
/gene_synonym="PRDM3"
/db_xref="GeneID:2122"
/db_xref="HGNC:HGNC:3498"
/db_xref="MIM:165215"
CDS 244..3375
/gene="EVI1"
/gene_synonym="AML1-EVI-1"
/gene_synonym="EVI-1"
/gene_synonym="MDS1-EVI1"
/gene_synonym="PRDM3"
/codon_start=1
/product="EVI1 protein"
/protein_id="AAI43953.1"
/db_xref="GeneID:2122"
/db_xref="HGNC:HGNC:3498"
/db_xref="MIM:165215"
/translation="MKSEDYPHETMAPDIHEERQYRCEDCDQLFESKAELADHQKFPC
STPHSAFSMVEEDFQQKLESENDLQEIHTIQECKECDQVFPDLQSLEKHMLSHTEERE
YKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKQVFTDPSNLQRHIRSQHVGARA
HACPECGKTFATSSGLKQHKHIHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQI
KCKDCGQMFSTTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPAMDKTSMVNMSHAN
PGLADYFGANRHPAGLTFPTAPGFSFSFPGLFPSGLYHRPPLIPASSPVKGLSSTEQT
NKSQSPLMTHPQILPATQDILKALSKHPSVGDNKPVELQPERSSEERPFEKISDQSES
SDLDDVSTPSGSDLETTSGSDLESDIESDKEKFKENGKMFKDKVSPLQNLASINNKKE
YSNHSIFSPSLEEQTAVSGAVNDSIKAIASIAEKYFGSTGLVGLQDKKVGALPYPSMF
PLPFFPAFSQSMYPFPDRDLRSLPLKMEPQSPGEVKKLQKGSSESPFDLTTKRKDEKP
LTPVPSKPPVTPATSQDQPLDLSMGSRSRASGTKLTEPRKNHVFGGKKGSNVESRPAS
DGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQMSAIENMAEK
LESFSALKPEASELLQSVPSMFNFRAPPNALPENLLRKGKERYTCRYCGKIFPRSANL
TRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLD
RHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNV
EERMNGSHFKDEKALVTSQNSDLLDDEEVEDEVLLDEEDEDNDITGKTGKEPVTSNLH
EGNPEDDYEETSALEMSCKTSPVRYKEEEYKSGLSALDHIRHFTDSLKMRKMEDNQYS
EAELSSFSTSHVPEELKQPLHRKSKSQAYAMMLSLSDKESLHSTSHSSSNVWHSMARA
AAESSAIQSISHV"
BASE COUNT 1041 a 781 c 770 g 818 t
ORIGIN
1 caacatcgtg tgctgcttcg cgagaaagtc acattcggac cctttggcta gattatctta
61 gacgaatttt acaatgtgaa gttctgcata gatgccagtc aaccagatgt tggaagctgg
121 ctcaagtaca ttagattcgc tggctgttat gatcagcaca accttgttgc atgccagata
181 aatgatcaga tattctatag agtagttgca gacattgcgc cgggagagga gcttctgctg
241 ttcatgaaga gcgaagacta tccccatgaa actatggcgc cggatatcca cgaagaacgg
301 caatatcgct gcgaagactg tgaccagctc tttgaatcta aggctgaact agcagatcac
361 caaaagtttc catgcagtac tcctcactca gcattttcaa tggttgaaga ggactttcag
421 caaaaactcg aaagcgagaa tgatctccaa gagatacaca cgatccagga gtgtaaggaa
481 tgtgaccaag tttttcctga tttgcaaagc ctggagaaac acatgctgtc acatactgaa
541 gagagggaat acaagtgtga tcagtgtccc aaggcattta actggaagtc caatttaatt
601 cgccaccaga tgtcacatga cagtggaaag cactatgaat gtgaaaactg tgccaagcag
661 gttttcacgg accctagcaa ccttcagcgg cacattcgct ctcagcatgt cggtgcccgg
721 gcccatgcat gcccggagtg tggcaaaacg tttgccactt cgtcgggcct caaacaacac
781 aagcacatcc acagcagtgt gaagcccttt atctgtgagg tctgccataa atcctatact
841 cagttttcaa acctttgccg tcataagcgc atgcatgctg attgcagaac ccaaatcaag
901 tgcaaagact gtggacaaat gttcagcact acgtcttcct taaataaaca caggaggttt
961 tgtgagggca agaaccattt tgcggcaggt ggattttttg gccaaggcat ttcacttcct
1021 ggaaccccag ctatggataa aacgtccatg gttaatatga gtcatgccaa cccgggcctt
1081 gctgactatt ttggcgccaa taggcatcct gctggtctta cctttccaac agctcctgga
1141 ttttctttta gcttccctgg tctgtttcct tccggcttgt accacaggcc tcctttgata
1201 cctgctagtt ctcctgttaa aggactatca agtactgaac agacaaacaa aagtcaaagt
1261 cccctcatga cacatcctca gatactgcca gctacacagg atattttgaa ggcactatct
1321 aaacacccat ctgtagggga caataagcca gtggagctcc agcccgagag gtcctctgaa
1381 gagaggccct ttgagaaaat cagtgaccag tcagagagta gtgaccttga tgatgtcagt
1441 acaccaagtg gcagtgacct ggaaacaacc tcgggctctg atctggaaag tgacattgaa
1501 agtgataaag agaaatttaa agaaaatggt aaaatgttca aagacaaagt aagccctctt
1561 cagaatctgg cttcaataaa taataagaaa gaatacagca atcattccat tttctcacca
1621 tctttagagg agcagactgc ggtgtcagga gctgtgaatg attctataaa ggctattgct
1681 tctattgctg aaaaatactt tggttcaaca ggactggtgg ggctgcaaga caaaaaagtt
1741 ggagctttac cttacccttc catgtttccc ctcccatttt ttccagcatt ctctcaatca
1801 atgtacccat ttcctgatag agacttgaga tcgttacctt tgaaaatgga accccaatca
1861 ccaggtgaag taaagaaact gcagaagggc agctctgagt ccccctttga tctcaccact
1921 aagcgaaagg atgagaagcc cttgactcca gtcccctcca agcctccagt gacacctgcc
1981 acaagccaag accagcccct ggatctaagt atgggcagta ggagtagagc cagtgggaca
2041 aagctgactg agcctcgaaa aaaccacgtg tttgggggaa aaaaaggaag caacgtcgaa
2101 tcaagacctg cttcagatgg ttccttgcag catgcaagac ccactccttt ctttatggac
2161 cctatttaca gagtagagaa aagaaaacta actgacccac ttgaagcttt aaaagagaaa
2221 tacttgaggc cttctccagg attcttgttt cacccacaaa tgtcagctat tgaaaacatg
2281 gcagaaaagc tagagagctt cagtgccctg aaacctgagg ccagtgagct cttacagtca
2341 gtgccctcta tgttcaactt cagggcgcct cccaatgccc tgccagagaa ccttctgcgg
2401 aagggaaagg agcgctatac ctgcagatac tgtggcaaga tttttccaag gtctgcaaac
2461 ctaacacggc acttgagaac ccacacagga gagcagcctt acagatgcaa atactgtgac
2521 agatcattta gcatatcttc taacttgcaa aggcatgttc gcaacatcca caataaagag
2581 aagccattta agtgtcactt atgtgatagg tgttttggtc aacaaaccaa tttagacaga
2641 cacctaaaga aacatgagaa tgggaacatg tccggtacag caacatcgtc gcctcattct
2701 gaactggaaa gtacaggtgc gattctggat gacaaagaag atgcttactt cacagaaatt
2761 cgaaatttca ttgggaacag caaccatggc agccaatctc ccaggaatgt ggaggagaga
2821 atgaatggca gtcattttaa agatgaaaag gctttggtga ccagtcaaaa ttcagacttg
2881 ctggatgatg aagaagttga agatgaggtg ttgttagatg aggaggatga agacaatgat
2941 attactggaa aaacaggaaa ggaaccagtg acaagtaatt tacatgaagg aaaccctgag
3001 gatgactatg aagaaaccag tgccctggag atgagttgca agacatcccc agtgaggtat
3061 aaagaggaag aatataaaag tggactttct gctctagatc atataaggca cttcacagat
3121 agcctcaaaa tgaggaaaat ggaagataat caatattctg aagctgagct gtcttctttt
3181 agtacttccc atgtgccaga ggaacttaag cagccgttac acagaaagtc caaatcgcag
3241 gcatatgcta tgatgctgtc actgtctgac aaggagtccc tccattctac atcccacagt
3301 tcttccaacg tgtggcacag tatggccagg gctgcggcgg aatccagtgc tatccagtcc
3361 ataagccacg tatgacgtta tcaaggttga ccagagtggg accaagtcca
//