LOCUS BC143801 1301 bp mRNA linear HUM 08-JAN-2009
DEFINITION Homo sapiens LIM homeobox transcription factor 1, beta, mRNA (cDNA
clone MGC:177332 IMAGE:9052315), complete cds.
ACCESSION BC143801
VERSION BC143801.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1301)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1301)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 16 Row: M Column: 20.
FEATURES Location/Qualifiers
source 1..1301
/db_xref="H-InvDB:HIT000502243"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177332 IMAGE:9052315"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_361"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: CCGTcccg"
gene 1..1301
/gene="LMX1B"
/gene_synonym="LMX1.2"
/db_xref="GeneID:4010"
/db_xref="HGNC:HGNC:6654"
/db_xref="MIM:602575"
CDS 51..1202
/gene="LMX1B"
/gene_synonym="LMX1.2"
/codon_start=1
/product="LMX1B protein"
/protein_id="AAI43802.1"
/db_xref="GeneID:4010"
/db_xref="HGNC:HGNC:6654"
/db_xref="MIM:602575"
/translation="MLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRF
LMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPT
EFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDE
SDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVS
SKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQGEPG
PGQGLGQEVLSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGND
SIFHDIDSDTSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS"
BASE COUNT 256 a 428 c 427 g 190 t
ORIGIN
1 ccgagtcgct ggagaggtgc ttccctcgcg ggcagacgga ctgcgccaag atgttggacg
61 gcatcaagat ggaggagcac gccctgcgcc ccgggcccgc cactctgggg gtgctgctgg
121 gctccgactg cccgcatccc gccgtctgcg agggctgcca gcggcccatc tccgaccgct
181 tcctgatgcg agtcaacgag tcgtcctggc acgaggagtg tttgcagtgc gcggcgtgtc
241 agcaagccct caccaccagc tgctacttcc gggatcggaa actgtactgc aaacaagact
301 accaacagct cttcgcggcc aagtgcagcg gctgcatgga gaagatcgcc cccaccgagt
361 tcgtgatgcg ggcgctggag tgcgtgtacc acctgggctg cttctgctgc tgcgtgtgtg
421 aacggcagct acgcaagggc gacgaattcg tgctcaagga gggccagctg ctgtgcaagg
481 gtgactacga gaaggagaag gacctgctca gctccgtgag ccccgacgag tccgactccg
541 tgaagagcga ggatgaagat ggggacatga agccggccaa ggggcagggc agtcagagca
601 agggcagcgg ggatgacggg aaggacccgc ggaggcccaa gcgaccccgg accatcctca
661 ccacgcagca gcgaagagcc ttcaaggcct ccttcgaggt ctcgtcgaag ccttgccgaa
721 aggtccgaga gacactggca gctgagacgg gcctcagtgt gcgcgtggtc caggtctggt
781 ttcagaacca aagagcaaag atgaagaagc tggcgcggcg gcaccagcag cagcaggagc
841 agcagaactc ccagcggctg ggccagggtg agccggggcc ggggcagggc ctgggccagg
901 aggtcctgtc cagccgcatg gagggcatga tggcttccta cacgccgctg gccccaccac
961 agcagcagat cgtggccatg gaacagagcc cctacggcag cagcgacccc ttccagcagg
1021 gcctcacgcc gccccaaatg ccagggaacg actccatctt ccatgacatc gacagcgata
1081 cctccttaac cagcctcagc gactgcttcc tcggctcctc agacgtgggc tccctgcagg
1141 cccgcgtggg gaaccccatc gaccggctct actccatgca gagttcctac ttcgcctcct
1201 gagagccagc caggcgcacg gacgcttggg caggggcctg ggggggactg ccagcctctg
1261 cggccagcct ggccaccccc gccctgctct ccgcacagac c
//