LOCUS BC143522 2277 bp mRNA linear HUM 08-JAN-2009
DEFINITION Homo sapiens highly divergent homeobox, mRNA (cDNA clone MGC:177048
IMAGE:9052031), complete cds.
ACCESSION BC143522
VERSION BC143522.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2277)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2277)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 15 Row: N Column: 3.
FEATURES Location/Qualifiers
source 1..2277
/db_xref="H-InvDB:HIT000501973"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177048 IMAGE:9052031"
/tissue_type="Lung and heart, PCR rescued clones"
/clone_lib="NIH_MGC_314"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: AGGTGTGC"
gene 1..2277
/gene="HDX"
/gene_synonym="D030011N01Rik"
/db_xref="GeneID:139324"
/db_xref="HGNC:HGNC:26411"
CDS 160..2232
/gene="HDX"
/gene_synonym="D030011N01Rik"
/codon_start=1
/product="HDX protein"
/protein_id="AAI43523.1"
/db_xref="GeneID:139324"
/db_xref="HGNC:HGNC:26411"
/translation="MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLD
FSVVRTWVGNKRRKMSSKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSAN
NDVIVTGIYSPASSSSRQGTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVA
HCKNASLLLGEKTIILSRQTSVLNAGNSVFNHAKKNYGNSSVQASEMTVPQKPSVCHR
PCKIEPVGIQRSYKPEHTGPALHNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQR
ILGGNAPQKPSSAEGNCLSIAMETGDAEDEYAREEELASMRAQIPSYSRFYESGSSLR
AENQSTTLPGPGRNMPNSQMVNIRDMSDNVLYQNRNYHLTPRTSLHTASSTMYSNTNP
LRSNSSPHFASSNQLRLSQNQNNYQISGNLTVPWITGCSRKRALQDRTQFSDRDLATL
KKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEVPPPRGGP
ADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEVVPNDARA
HKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENELEIQKQ
KYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTSFSVSSLS
EKNVSESL"
BASE COUNT 785 a 445 c 484 g 563 t
ORIGIN
1 ggcctgatct gggttccgct gattcctttc gtaaccgcac cacacccgag ctacaatctc
61 tggacaaaat tttaagagaa actccctcag aactcctaaa ggtaaacaaa agcaggcaga
121 ttgaggatgg cagtcagaat atgaagtgac catatatgga tgaatctacg ttctgtattt
181 actgtagaac aacaaaggat tttacagcgt tattatgaaa atggaatgac aaatcaaagt
241 aaaaattgct ttcagctcat attacagtgt gcacaggaga ctaagctgga cttcagtgta
301 gtcaggacgt gggttggcaa taagagaaga aagatgagta gtaagaactc tgaatctgga
361 acagcaacaa caggaacctc tttgtcagct ccagacatca cagtcagaaa tgtggttaat
421 attgctcgac cctcaagcca gcagtcttct tggacatctg ccaataatga tgtcattgta
481 actggtatat acagtccagc cagttcatca agtaggcaag gaacaaacaa acatacagac
541 acacaaatta cagaagcaca taaaatccct attcagaaaa cagccactaa aaatgatact
601 gagtttcagt tacacattcc tgtccaaaga caagtagcac actgtaaaaa tgcttcccta
661 ctcctaggtg aaaaaacaat tattttgtca agacagacaa gtgtgctaaa tgctggaaac
721 tcagtattca atcacgcaaa gaaaaactat ggaaactctt cagtacaagc ttctgaaatg
781 acagtacctc aaaagccttc tgtgtgccac cgaccttgta aaattgaacc agttgggatt
841 caaaggtcat ataagcctga acacacaggc ccagcattac ataacttatg tgggcaaaag
901 ccaactatta gagaccctta ctgtagaaca caaaacttgg aaatccgtga agtgttttca
961 ttggcagtta gcgattaccc ccagagaatt ctgggaggaa atgccccaca gaagcctagc
1021 tcagcagaag gaaattgttt gtccattgca atggagactg gagatgctga ggatgaatat
1081 gccagagagg aagagctggc atcgatgaga gcacagatac caagctattc gagattttat
1141 gaaagtggca gttcccttcg agctgagaac caaagtacaa ccttgcccgg accaggaaga
1201 aatatgccaa attcacaaat ggtgaatatt agagatatgt cagacaatgt actgtatcaa
1261 aacagaaact accatttgac accacggacc tcattacata cagcatctag tacaatgtac
1321 agtaatacca atccattacg gagtaattct tctcctcatt ttgcatcatc aaaccaattg
1381 agattatcac aaaaccaaaa caattaccag atttcaggaa accttactgt gccttggatt
1441 acagggtgtt ctagaaaaag agcactacag gaccgcactc agttcagtga ccgagactta
1501 gccaccctta agaagtattg ggacaatggc atgaccagcc tgggctctgt ttgtagagag
1561 aaaattgaag ctgtggcaac tgaattaaat gttgactgtg aaatagttcg gacttggatt
1621 gggaatcgaa gaaggaaata tcgtttaatg gggattgaag ttccacctcc aagaggaggc
1681 cctgctgatt tctctgagca gcctgagtct ggttctttat ctgcactcac accaggagag
1741 gaagctgggc ctgaagtagg agaggataat gacagaaatg atgaagtatc catctgtttg
1801 tctgaaggaa gctctcaaga agagcccaat gaagttgttc cgaatgatgc aagggctcat
1861 aaggaagagg accaccatgc agtaaccaca gataatgtga aaatagaaat tattgatgat
1921 gaagaaagtg acatgataag taattctgaa gtagaacaag taaactcttt cttggattat
1981 aagaatgaag aagtcaaatt cattgaaaat gagctcgaga ttcaaaagca aaaatacttt
2041 aaacttcaga cttttgttag aagcttgata ttagcaatga aagctgatga taaggaacaa
2101 cagcaggcac tgctgtcaga tttacctcct gaattagagg aaatggattt caatcatgcc
2161 tcactggagc ctgatgatac ctcattcagt gtatcttctt tgtcagagaa aaatgtctca
2221 gaaagtttgt gatttcagtt ggagggaata tatgatacag tcttttggct tcgtaac
//