LOCUS BC143496 3691 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens cell adhesion molecule with homology to L1CAM (close
homolog of L1), mRNA (cDNA clone MGC:177021 IMAGE:9052004),
complete cds.
ACCESSION BC143496
VERSION BC143496.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3691)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3691)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 15 Row: G Column: 4.
FEATURES Location/Qualifiers
source 1..3691
/db_xref="H-InvDB:HIT000501949"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:177021 IMAGE:9052004"
/tissue_type="Brain, cerebral cortex, PCR rescued clones"
/clone_lib="NIH_MGC_287"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: AACCTTCC"
gene 1..3691
/gene="CHL1"
/gene_synonym="CALL"
/gene_synonym="L1CAM2"
/db_xref="GeneID:10752"
/db_xref="HGNC:HGNC:1939"
/db_xref="MIM:607416"
CDS 29..3655
/gene="CHL1"
/gene_synonym="CALL"
/gene_synonym="L1CAM2"
/codon_start=1
/product="CHL1 protein"
/protein_id="AAI43497.1"
/db_xref="GeneID:10752"
/db_xref="HGNC:HGNC:1939"
/db_xref="MIM:607416"
/translation="MEPLLLGRGLIVYLMFLLLKFSKAIEIPSSVQQVPTIIKQSKVQ
VAFPFDEYFQIECEAKGNPEPTFSWTKDGNPFYFTDHRIIPSNNSGTFRIPNEGHISH
FQGKYRCFASNKLGIAMSEEIEFIVPSVPKFPKEKIDPLEVEEGDPIVLPCNPPKGLP
PLHIYWMNIELEHIEQDERVYMSQKGDLYFANVEEKDSRNDYCCFAAFPRLRTIVQKM
PMKLTVNSSNSIKQRKPKLLLPPTESGSESSITILKGEILLLECFAEGLPTPQVDWNK
IGGDLPKGREAKENYGKTLKIENVSYQDKGNYRCTASNFLGTATHDFHVIVEEPPRWT
KKPQSAVYSTGSNGILLCEAEGEPQPTIKWRVNGSPVDNHPFAGDVVFPREISFTNLQ
PNHTAVYQCEASNVHGTILANANIDVVDVRPLIQTKDGENYATVVGYSAFLHCEFFAS
PEAVVSWQKVEEVKPLEGRRYHIYENGTLQINRTTEEDAGSYSCWVENAIGKTAVTAN
LDIRNATKLRVSPKNPRIPKLHMLELHCESKCDSHLKHSLKLSWSKDGEAFEINGTED
GRIIIDGANLTISNVTLEDQGIYCCSAHTALDSAADITQVTVLDVPDPPENLHLSERQ
NRSVRLTWEAGADHNSNISEYIVEFEGNKEEPGRWEELTRVQGKKTTVILPLAPFVRY
QFRVIAVNEVGRSQPSQPSDHHETPPAAPDRNPQNIRVQASQPKEMIIKWEPLKSMEQ
NGPGLEYRVTWKPQGAPVEWEEETVTNHTLRVMTPAVYAPYDVKVQAINQLGSGPDPQ
SVTLYSGEDYPDTAPVIHGVDVINSTLVKVTWSTVPKDRVHGRLKGYQINWWKTKSLL
DGRTHPKEVNILRFSGQRNSGMVPSLDAFSEFHLTVLAYNSKGAGPESEPYIFQTPEG
VPEQPTFLKVIKVDKDTATLSWGLPKKLNGNLTGYLLQYQIINDTYEIGELNDINITT
PSKPSWHLSNLNATTKYKFYLRACTSQGCGKPITEESSTLGEGSKGIGKISGVNLTQK
THPVEVFEPGAEHIVRLMTKNWGDNDSIFQDVIETRGREYAGLYDDISTQGWFIGLMC
AIALLTLLLLTVCFVKRNRGGKYSVKEKEDLHPDPEIQSVKDETFGEYSDSDEKPLKG
SLRSLNRDMQPTESADSLVEYGEGDHGLFSEDGSFIGAYAGSKEKGSVESNGSSTATF
PLRA"
BASE COUNT 1194 a 756 c 822 g 919 t
ORIGIN
1 taccgggttg tcttcttcct gaagagcaat ggagccgctt ttacttggaa gaggactaat
61 cgtatatcta atgttcctcc tgttaaaatt ctcaaaagca attgaaatac catcttcagt
121 tcaacaggtt ccaacaatca taaaacagtc aaaagtccaa gttgcctttc ccttcgatga
181 gtattttcaa attgaatgtg aagctaaagg aaatccagaa ccaacatttt cgtggactaa
241 ggatggcaac cctttttatt tcactgacca tcggataatt ccatcgaaca attcaggaac
301 attcaggatc ccaaacgagg ggcacatatc tcactttcaa gggaaatacc gctgctttgc
361 ttcaaataaa ctgggaatcg ctatgtcaga agaaatagaa tttatagttc caagtgttcc
421 aaaattccca aaagaaaaaa ttgaccctct tgaagtggag gagggagatc caattgtcct
481 cccatgcaat cctcccaaag gcctcccacc tttacacatt tattggatga atattgaatt
541 agaacacatc gaacaagatg aaagagtata catgagccaa aagggagatc tatacttcgc
601 aaacgtggaa gaaaaggaca gtcgcaatga ctactgttgc tttgctgcat ttccaagatt
661 aaggactatt gtacagaaaa tgccaatgaa actaacagtt aacagttcaa attccatcaa
721 gcaaagaaaa cccaaactgc tgttgcctcc cactgagagt ggcagtgagt cttcaattac
781 catcctcaaa ggggaaatct tgctgcttga gtgttttgct gaaggcttgc caactccaca
841 ggttgattgg aacaaaattg gtggtgactt accaaagggg agagaagcaa aagaaaatta
901 tggcaagact ttgaagatag agaatgtctc ctaccaggac aaaggaaatt atcgctgcac
961 agccagcaat ttcttgggaa cagccactca cgattttcac gttatagtag aagagcctcc
1021 tcgctggaca aagaagcctc agagtgctgt gtatagcacc ggaagcaatg gcatcttgtt
1081 atgtgaggct gaaggagaac ctcaacccac aatcaagtgg agagtcaatg gctccccagt
1141 tgacaatcat ccatttgctg gtgatgttgt cttccccagg gaaatcagtt ttaccaacct
1201 tcaaccaaat catactgctg tgtaccagtg tgaagcctca aatgtccatg gaactatcct
1261 tgccaatgcc aatattgatg ttgtggatgt ccgtccattg atacaaacca aagatggaga
1321 aaattacgct acagtggttg ggtacagtgc tttcttacat tgcgagttct ttgcttcgcc
1381 tgaggcagtc gtgtcctggc agaaggtgga agaagtgaaa cccctggagg gcaggcggta
1441 tcatatctat gaaaatggca cattgcagat caacagaacc accgaagaag atgctgggtc
1501 ttactcatgt tgggtagaaa atgctatagg aaaaactgca gtcacagcca atttggatat
1561 tagaaatgct acaaaactta gagtttctcc taagaatcct cgtatcccca aattgcatat
1621 gcttgaatta cattgtgaaa gcaaatgtga ctcacatttg aaacacagtt tgaagttgtc
1681 ctggagtaaa gatggagaag cctttgaaat taatggcaca gaagatggca ggataattat
1741 tgatggagct aatttgacca tatctaatgt aactttagag gaccaaggta tttactgctg
1801 ttcagctcat actgctctag acagtgctgc cgatataact caagtaactg ttcttgatgt
1861 tccggatcca ccagaaaacc ttcacttgtc tgaaagacag aacaggagtg ttcggctgac
1921 ctgggaagct ggagctgacc acaacagcaa tattagcgag tatattgttg aatttgaagg
1981 aaacaaagaa gagcctggaa ggtgggagga actgaccaga gtccaaggaa agaaaaccac
2041 agttatctta cctttggctc catttgtgag ataccagttc agggtcatag ccgtgaacga
2101 agtagggaga agtcagccta gccagccgtc agaccatcat gaaacaccac cagcagctcc
2161 agataggaat ccacaaaaca taagggttca agcctctcaa cccaaggaaa tgattataaa
2221 gtgggagcct ttgaaatcca tggagcagaa tggaccaggc ctagagtaca gagtgacctg
2281 gaagccacag ggagccccag tggagtggga agaagaaaca gtcacaaacc acacattgcg
2341 ggtgatgacg cctgctgtct atgcccctta tgatgtcaag gtccaggcta tcaatcaact
2401 aggatctggg cctgaccctc agtcagtgac tctctattct ggagaagact atcctgatac
2461 agctccagtg atccatgggg tggacgttat aaacagtaca ttagttaaag ttacctggtc
2521 aacagttcca aaggacagag tacatggacg tctgaaaggc tatcagataa attggtggaa
2581 aacaaaaagt ctgttggatg gaagaacaca tcccaaagaa gtgaacattc taagattttc
2641 aggacaaaga aactctggaa tggttccttc cttagatgcc tttagtgaat ttcatttaac
2701 agtcttagcc tataactcta aaggagctgg tcctgaaagt gagccttata tatttcaaac
2761 accagaagga gtacctgaac agccaacttt tctaaaggtc atcaaagttg ataaagacac
2821 tgccacttta tcttggggac tacctaagaa attaaatgga aacttaactg gctatctttt
2881 gcaatatcag ataataaatg acacctacga gattggagaa ttaaatgata ttaacattac
2941 aactccatca aagcccagct ggcacctctc aaacctgaat gcaactacca agtacaaatt
3001 ctacttgagg gcttgcactt cacagggctg tggaaaaccg atcacggagg aaagctccac
3061 cttaggagaa gggagtaaag gtatcgggaa gatatcagga gtaaatctta ctcaaaagac
3121 tcacccagta gaggtatttg agccgggagc tgaacatata gttcgcctaa tgactaagaa
3181 ttggggcgat aacgatagca tttttcaaga tgtaattgag acaagaggga gagaatatgc
3241 tggtttatat gatgacatct ccactcaagg ctggtttatt ggactgatgt gtgcgattgc
3301 tcttctcaca ctactattat taactgtttg ctttgtgaag aggaatagag gtggaaagta
3361 ctcagttaaa gaaaaggaag atttgcatcc agacccagaa attcagtcag taaaagatga
3421 aacctttggt gaatacagtg acagtgatga aaagcctctc aaaggaagcc ttcggtccct
3481 taatagggat atgcagccta ctgaaagtgc tgacagctta gtcgaatacg gagagggaga
3541 ccatggtctc ttcagtgaag atggatcatt tattggtgcc tacgctggat ctaaggaaaa
3601 gggatctgtt gaaagcaatg gaagttctac agcaactttt ccccttcggg cataaacaca
3661 acatatgtaa gcaacgctac tggttcaccc c
//