LOCUS BC143494 2612 bp mRNA linear HUM 08-JAN-2009 DEFINITION Homo sapiens shroom family member 1, mRNA (cDNA clone MGC:177019 IMAGE:9052002), complete cds. ACCESSION BC143494 VERSION BC143494.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2612) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2612) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 15 Row: E Column: 6. FEATURES Location/Qualifiers source 1..2612 /db_xref="H-InvDB:HIT000501947" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:177019 IMAGE:9052002" /tissue_type="Liver, PCR rescued clones" /clone_lib="NIH_MGC_291" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: TGCGATCA" gene 1..2612 /gene="SHROOM1" /gene_synonym="APXL2" /db_xref="GeneID:134549" /db_xref="HGNC:HGNC:24084" /db_xref="MIM:611179" CDS 33..2591 /gene="SHROOM1" /gene_synonym="APXL2" /codon_start=1 /product="SHROOM1 protein" /protein_id="AAI43495.1" /db_xref="GeneID:134549" /db_xref="HGNC:HGNC:24084" /db_xref="MIM:611179" /translation="MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPE PRTQSPGTDLLPYLDWDYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPG TPGPLNRQATPLLYALAAEAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQR KELRMSLPARLRPTVPARPPATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQ RKWCFSEPGKLDRVGRGGGPARECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWL PETQPQGSMNLDSGSLKLGDAFRPASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAET PRPLFQTKLSRFLPQKEAAVMYPAELPQSSPADSEQRVSETCIVPAWLPSLPDEVFLE EAPLVRMRSPPDPHASQGPPASVHASDQPYGTGLGQRTGQVTVPTEYPLHECPGTAGA DDCWQGVNGSVGISRPTSHTPTGTANDNIPTIDPTGLTTNPPTAAESDLLKPVPADAL GLSGNDTPGPSHNTALARGTGQPGSRPTWPSQCLEELVQELARLDPSLCDPLASQPSP EPPLGLLDGLIPLAEVRAAMRPACGEAGEEAASTFEPGSYQFSFTQLLPAPREETRLE NPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQKMLQDLHTEQERLQGEAQAWARR QAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLGSRLARVRRALARAASDSDPD EQASLLQRLRLLQRQEEDAKELKEHVARRERAVREVLVRALPVEELRVYCALLAGKAA VLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTCPPVQPPFPLLLT" BASE COUNT 447 a 912 c 827 g 426 t ORIGIN 1 gccacccagc ctcagcactc atctgcgcag ccatggaggc cctgggacct gggggcgacc 61 gcgcctcccc ggcctcgtcc actagcagcc tggacctgtg gcatctgtcc atgcgcgcgg 121 actcggccta cagctctttc tccgcagcct ccggcggccc cgagccgcgc acgcagtcgc 181 cggggacaga cctccttcct tacctagact gggactacgt gcgtgtggtt tggggcggcc 241 cgggccccgc cccgcccgac gctgcccttt gcacatcccc gcggccccgg cccgcggttg 301 cagcccgcag tgggccgcag ccaacagagg tcccggggac cccgggacca ctgaacaggc 361 aggccacccc gctgctgtac gcgctggcgg ccgaggcgga ggccgcggcg caggctgccg 421 agccgcccag cccgccggcc tcgagggccg cctaccgcca gcggcttcag ggcgcgcagc 481 ggcgagtgct ccgggagacg tcgttccagc gcaaggagct ccgcatgagc ctgcccgccc 541 gtctgcggcc cactgtccca gcgcggcccc cggcgactca cccgcgctcc gcctcgctca 601 gccacccggg cggggagggg gagccggcgc gctcccgggc tcccgcgcca ggaactgccg 661 gccggggtcc cctcgccaac cagcagcgga agtggtgctt ctcagagcca ggaaagctgg 721 atcgtgtggg tcggggcggt gggccggcgc gggaatgcct gggtgaggcc tgctccagct 781 ctggcctccc tgggcccgag cccttggagt tccagcatcc ggcgctggct aagtttgaag 841 atcacgaggt cggatggctg cccgagacgc aaccccaagg ctccatgaac ctggactccg 901 ggtccttgaa gctcggtgat gccttcaggc ccgccagtcg gagtcggagc gcttcaggcg 961 aagtcttggg ttcctgggga ggatcaggag ggaccatacc cattgtccag gctgttcccc 1021 aaggagcaga aacccccaga ccattgtttc agaccaaact ttccaggttc ttgcctcaga 1081 aagaggctgc ggtgatgtat cctgcagagt taccccagag cagccctgct gacagtgaac 1141 agagggtctc agagacctgc attgtgcctg cctggctccc ctcccttcct gatgaagtgt 1201 tcctagaaga ggccccactg gtcagaatga gatcaccacc agacccccat gcctcccagg 1261 ggcccccagc cagtgtccat gcctctgacc agccgtatgg aactggctta ggccaaagaa 1321 ctggccaggt tacagtcccc acagagtacc cgctccatga gtgtccagga actgcagggg 1381 cagatgactg ctggcagggg gtgaatggtt ctgtaggtat ttccaggccc acaagccaca 1441 cccccactgg gactgcaaat gataacatcc caactattga ccccactgga ctgaccacca 1501 atccccccac agctgcagag agtgacctcc tcaaacctgt cccagctgat gccttgggac 1561 tttcaggcaa tgatactcca ggtccctctc acaatactgc cctagccagg ggcactggcc 1621 agcctggttc caggcccaca tggcctagtc agtgcctcga ggagctggtt caggagctgg 1681 ccagattaga tccctctcta tgtgaccctc ttgcttccca gcccagccca gagccacccc 1741 tgggcctgct ggatggactg attcctttag cagaggtccg ggctgcaatg cggcctgcct 1801 gtggggaggc tggagaggag gctgccagta cttttgagcc agggtcctat cagttcagct 1861 tcacccagct cctgccggct cctcgggagg agacaaggct tgaaaaccct gccacccacc 1921 ctgtgcttga ccagccatgt gggcaggggc tccctgcacc aaacaacagc atccagggca 1981 agaaagtgga gctggccgcc cgcctccaaa agatgcttca ggaccttcac acggagcagg 2041 agcggctgca gggggaggca caagcgtggg ccaggcgcca agcggctctg gaggctgcag 2101 tgcgccaggc ctgtgcccct caggagctgg agcggttcag ccggttcatg gccgacctag 2161 agcgcgtgct tggccttctg ctgctgctgg gcagtcgcct ggcgcgcgtg cgccgcgccc 2221 tggcccgggc ggcctcagac agcgaccctg atgagcaggc ctccctgctg cagcgactcc 2281 ggctcctgca gcggcaggag gaggacgcca aggagctgaa ggagcacgta gcgcggcgcg 2341 agcgggccgt gcgggaggtg ctggtgcgag cactaccggt ggaggagctg cgcgtctatt 2401 gcgccctgct ggcgggcaag gccgccgtcc tggcccagca gcgcaacctg gacgagcgca 2461 tccgcctcct tcaggaccaa ctggacgcca tcagggacga ccttggccat catgccccgt 2521 ctcccagccc ggcgcggccc ccagggacct gtcctccagt tcagccgccc ttccctcttc 2581 tccttacata gttataggtg gagagggtgg gg //