LOCUS BC143328 2504 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 3, mRNA (cDNA clone MGC:176850 IMAGE:9051833), complete cds.
ACCESSION BC143328
VERSION BC143328.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2504)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2504)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 15 Row: N Column: 24.
FEATURES Location/Qualifiers
source 1..2504
/db_xref="H-InvDB:HIT000501786"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:176850 IMAGE:9051833"
/tissue_type="Colon, PCR rescued clones"
/clone_lib="NIH_MGC_295"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: GCTAACCA"
gene 1..2504
/gene="SLC9A3"
/db_xref="GeneID:6550"
/db_xref="HGNC:HGNC:11073"
/db_xref="MIM:182307"
CDS 9..2486
/gene="SLC9A3"
/codon_start=1
/product="SLC9A3 protein"
/protein_id="AAI43329.1"
/db_xref="GeneID:6550"
/db_xref="HGNC:HGNC:11073"
/db_xref="MIM:182307"
/translation="MWGLGARGPDRGLLLALALGGLARAGGVEVEPGGAHGESGGFQV
VTFEWAHVQDPYVIALWILVASLAKIGFHLSHKVTSVVPESALLIVLGLVLGGIVWAA
DHIASFTLTPTVFFFYLLPPIVLDAGYFMPNRLFFGNLGTILLYAVVGTVWNAATTGL
SLYGVFLSGLMGDLQIGLLDFLLFGSLMAAVDPVAVLAVFEEVHVNEVLFIIVFGESL
LNDAVTVVLYNVFESFVALGGDNVTGVDCVKGIVSFFVVSLGGTLVGVVFAFLLSLVT
RFTKHVRIIEPGFVFIISYLSYLTSEMLSLSAILAITFCGICCQKYVKANISEQSATT
VRYTMKMLASSAETIIFMFLGISAVNPFIWTWNTAFVLLTLVFISVYRAIGVVLQTWL
LNRYRMVQLEPIDQVVLSYGGLRGAVAFALVVLLDGDKVKEKNLFVSTTIIVVFFTVI
FQWLKVKRSEHREPRLNEKLHGRAFDHILSAIEDISGQIGHNYLRDKWSHFDRKFLSR
VLMRRSAQKSRDRILNVFHELNLKDAISYVAEGERRGSLAFIRSPSTDNVVNVDFTPR
SSTVEASVSYLLRENVSAVCLDMQSLEQRRRSIRDAEDMVTHHTLQQYLYKPRQEYKH
LYSRHELTPTEDEKQDREIFHRTMRKRLESFKSTKLGLNQNKKAAKLYKRERAQKRRN
SSIPNGKLPMESPAQNFTIKEKDLELSDTEEPPNYDEEMSGGIEFLASVTKDTASDSP
AGIDNPVFSPDEALDRSLLARLPPWLSPGETVVPSQRARTQIPYSPGTFRRLMPFRLS
SKSVDSFLQADGPEERPPAALPESTHM"
BASE COUNT 446 a 806 c 766 g 486 t
ORIGIN
1 aggcggcaat gtggggactc ggggcccggg gccccgaccg ggggctgctg ctggcgctgg
61 cgctgggcgg gctggcgcgg gccgggggcg tcgaggtgga gcccggcggc gcgcacggcg
121 agagcggggg cttccaggtg gtcaccttcg agtgggccca cgtgcaggat ccctacgtca
181 tcgcgctctg gatcctcgtg gccagcttgg ccaagatcgg gttccacctg tcccacaagg
241 tcaccagcgt ggttcccgag agcgccctgc tcatcgtgct gggcctggtg ctgggcggca
301 tcgtctgggc ggccgaccac atcgcgtcct tcacactgac gcccaccgtc ttcttcttct
361 acctgctgcc ccccatcgtg ctggacgccg gctacttcat gcccaaccgc ctcttcttcg
421 gcaacctggg gaccatcctg ttgtacgccg tcgtgggtac cgtgtggaac gcggccacca
481 ccgggctgtc cctctacggt gtcttcctca gtgggctcat gggcgacctg cagattgggc
541 tgctggactt cctcctgttt ggcagcctca tggcggctgt ggacccggtg gccgtcctgg
601 ccgtgtttga ggaggtccat gtcaacgagg tcctgttcat catcgtcttc ggggagtcgc
661 tgctgaacga cgcagtcacc gtggttctgt acaatgtgtt tgaatctttc gtggcgctgg
721 gaggtgacaa cgtgactggc gtggactgcg tgaagggcat agtgtccttc ttcgtggtga
781 gcctgggggg cacgctggtg ggggtggtct tcgccttcct gctgtcgctg gtgacgcgct
841 tcaccaagca tgtgcgtatc atcgagcccg gcttcgtgtt catcatctcc tacctgtcct
901 acctgacgtc cgagatgctg tcgctgtcgg ccatcctcgc catcaccttc tgtggcatct
961 gctgtcagaa gtatgtgaag gccaacatct cggagcagtc ggccaccacc gtgcgctaca
1021 ccatgaagat gctggccagc agcgccgaga ccatcatctt catgttcctg ggtatctcgg
1081 ccgtgaaccc gttcatctgg acctggaaca cggccttcgt gctcctgacg ctggtcttca
1141 tctccgtgta ccgggccatc ggtgtggtcc tgcagacctg gcttctgaac cgctaccgca
1201 tggtgcagct ggagcccatt gaccaggtgg tcctgtccta cgggggcctg cgcggggccg
1261 tggcctttgc cctggtggtg cttctggatg gagacaaggt caaggagaag aacctgttcg
1321 tcagcaccac catcatcgta gtgttcttca ccgtcatctt ccagtggctg aaggtgaaga
1381 ggagcgagca ccgggaacct cggctcaacg agaagctgca cggccgcgct ttcgaccaca
1441 tcctctcggc catcgaggac atatccggac agatcgggca caattatctc agagacaagt
1501 ggtcccactt cgacaggaag ttcctcagca gggtcctcat gagacggtcg gcccagaagt
1561 ctcgagaccg gatcctgaat gtcttccacg agctgaacct gaaggatgcc atcagctacg
1621 tggctgaggg agagcgccgc gggtccctgg ccttcatccg ctcccccagc accgacaacg
1681 tggtcaacgt ggacttcacg ccacgatcgt ccaccgtgga ggcctctgtc tcctacctcc
1741 tgagagaaaa tgtcagcgct gtctgcctgg acatgcagtc tctggagcag cgacggcgga
1801 gcatccggga cgcggaggac atggtcacgc accacacact acagcagtac ctgtacaagc
1861 cgcggcagga gtacaagcat ctgtacagcc gacacgagct cacgcccacg gaggacgaga
1921 aacaggaccg ggaaatcttc cacaggacca tgcggaagcg cctggagtcc ttcaagtcga
1981 ccaagctggg gctcaaccag aacaagaagg cggccaagct gtacaagcgg gagcgtgccc
2041 agaagcggag aaacagcagc atccccaatg ggaagctgcc catggagagc cctgcgcaga
2101 atttcaccat caaggagaaa gacttggaac tttcagacac cgaggagccc cccaactatg
2161 atgaggagat gagtgggggg atcgagttcc tggctagtgt caccaaggac acagcgtccg
2221 actcccctgc aggaattgac aaccctgtgt tttctccgga cgaggccctg gaccgcagcc
2281 tcctggccag gctgccgccc tggctgtctc ccggggagac ggtggtcccc tcgcagaggg
2341 cccgcacgca gattccctac tctcccggca ccttccgccg cctgatgccc ttccgcctca
2401 gcagcaagtc cgtggactcc ttcctgcagg cagacggccc cgaggagcgg ccccccgccg
2461 ccctccccga gtccacacac atgtgacacc ggctccgaca cgcc
//