LOCUS BC143289 1570 bp mRNA linear HUM 02-JAN-2009
DEFINITION Homo sapiens astrotactin 2, mRNA (cDNA clone IMAGE:9051792),
complete cds.
ACCESSION BC143289
VERSION BC143289.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1570)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1570)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 15 Row: N Column: 10
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1570
/db_xref="H-InvDB:HIT000501749"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:9051792"
/tissue_type="Colon, PCR rescued clones"
/clone_lib="NIH_MGC_295"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: TCTTAAAA"
gene 1..1570
/gene="ASTN2"
/gene_synonym="bA67K19.1"
/db_xref="GeneID:23245"
/db_xref="HGNC:HGNC:17021"
CDS 71..1246
/gene="ASTN2"
/gene_synonym="bA67K19.1"
/codon_start=1
/product="ASTN2 protein"
/protein_id="AAI43290.1"
/db_xref="GeneID:23245"
/db_xref="HGNC:HGNC:17021"
/translation="MPFITYLSGLLTAQMLSDDQLISGVEIRCEEKGRCPSTCHLCRR
PGKEQLSPTPVLLEINRVVPLYTLIQDNGTKEAFKSALMSSYWCSGKGDVIDDWCRCD
LSAFDANGLPNCSPLLQPVLRLSPTVEPSSTVVSLEWVDVQPAIGTKVSDYILQHKKV
DEYTDTDLYTGEFLSFADDLLSGLGTSCVAAGRSHGEVPEVSIYSVIFKCLEPDGLYK
FTLYAVDTRGRHSELSTVTLRTACPLVDDNKAEEIADKIYNLYNGYTSGKEQQMAYNT
LMEVSASMLFRVQHHYNSHYEKFGDFVWRSEDELGPRKAHLILRRLERVSSHCSSLLR
SAYIQSRVETVPYLFCRSEEVRPAGMVWYSILKDTKITCEEKMVSMARNTYGESKGR"
BASE COUNT 377 a 395 c 446 g 352 t
ORIGIN
1 atgggcgaaa gggacctgct caagttcact caagaccaca gagctgggca gcaagaagga
61 gctcaagtcc atgcccttca tcacctacct ctcaggtttg ctgacagccc agatgctgtc
121 agatgaccag ctcatttcag gtgtggagat tcgctgtgag gagaaggggc gctgtccatc
181 tacctgtcac ctttgccgcc ggccaggcaa ggagcagctg agccccacac cagtgctgct
241 ggaaatcaac cgtgtggtgc cactttatac cctcatccaa gacaatggca caaaggaggc
301 cttcaagagt gcactgatga gttcctactg gtgctcaggg aaaggggatg tgatcgatga
361 ctggtgcagg tgtgacctca gcgcctttga tgccaatggg ctccccaact gcagccccct
421 tctgcagccg gtgctgcggc tgtccccaac agtggagccc tccagtactg tggtctcctt
481 ggagtgggtg gatgttcagc cagctattgg gaccaaggtc tccgactata ttctgcagca
541 taagaaagtg gatgaataca cagacactga cctgtacaca ggagaattcc tgagttttgc
601 tgatgactta ctctctggcc tgggcacatc ttgtgtagca gctggtcgaa gccatggaga
661 ggtccctgaa gtcagtatct actcagtcat cttcaagtgt ctggagcccg acggtctcta
721 caagttcact ctgtatgctg tggatacacg agggaggcac tcagagctaa gcacggtgac
781 cctgaggacg gcctgtccac tggtagatga caacaaggca gaagaaatag ctgacaagat
841 ctacaatctg tacaatgggt acacaagtgg aaaggagcag cagatggcct acaacacact
901 gatggaggtc tcagcctcga tgctgttccg agtccagcac cactacaact ctcactatga
961 aaagtttggc gacttcgtct ggagaagtga ggatgagctg gggcccagga aggcccacct
1021 gattctacgg cgactggaga gggtgagtag ccactgctcc agcctcctgc ggagtgccta
1081 catccagagc cgcgtggaaa cagtgcccta tcttttctgc cgcagcgagg aggtccggcc
1141 tgcaggcatg gtgtggtata gcatcctcaa ggacaccaaa atcacgtgtg aggagaagat
1201 ggtgtcaatg gcccgaaaca cgtacgggga gtccaagggc cggtgaggga gggtattgcc
1261 ctccgtgagc acagagactc tccatgggag ggggagcagt attctcctgg atcctggggc
1321 ctgggtgggc tgggggacag ctgaggatgg gcctagcaga tgaagcttgc cagcaaggcc
1381 aaagcaaacg gtttctcctg tggatagtgg acagagacct ttgtaaccaa tggaattatt
1441 catttttctc tatcttttat tttttcaaag atattatttg actctatcaa aagtctctcc
1501 tttttaaacc ttttcttatg gatggctgtc aatcccgagg cagaagtttt caggtggaga
1561 ccaagcggcc
//