LOCUS BC142978 1473 bp mRNA linear HUM 11-JUN-2007
DEFINITION Homo sapiens exosome component 9, mRNA (cDNA clone MGC:167080
IMAGE:8860413), complete cds.
ACCESSION BC142978
VERSION BC142978.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1473)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1473)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: RIKEN
cDNA Library Preparation: RIKEN
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCF Plate: 13 Row: b Column: 11.
FEATURES Location/Qualifiers
source 1..1473
/db_xref="H-InvDB:HIT000435472"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:167080 IMAGE:8860413"
/tissue_type="Clones donated by RIKEN"
/clone_lib="NIH_MGC_424"
/lab_host="DH10B"
/note="Vector: pFLC1"
gene 1..1473
/gene="EXOSC9"
/gene_synonym="p5"
/gene_synonym="p6"
/gene_synonym="PM/Scl-75"
/gene_synonym="RRP45"
/gene_synonym="Rrp45p"
/db_xref="GeneID:5393"
/db_xref="HGNC:HGNC:9137"
/db_xref="MIM:606180"
CDS 80..1399
/gene="EXOSC9"
/gene_synonym="p5"
/gene_synonym="p6"
/gene_synonym="PM/Scl-75"
/gene_synonym="RRP45"
/gene_synonym="Rrp45p"
/codon_start=1
/product="exosome component 9"
/protein_id="AAI42979.1"
/db_xref="GeneID:5393"
/db_xref="HGNC:HGNC:9137"
/db_xref="MIM:606180"
/translation="MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYG
CCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKL
NRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHF
RRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGAYLLVDPNEREERVMD
GLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVR
KEGGKFGFAESIANQRITAFKMEKAPIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTP
GTAQIGEGVENSWGDLEDSEKEDDEGGGDQAIILDGIKMDTGVEVSDIGSQDAPIILS
DSEEEEMIILEPDKNPKKIRTQTTSAKQEKAPSKKPVKRRKKKRAAN"
BASE COUNT 486 a 271 c 352 g 364 t
ORIGIN
1 gggcggcggc gcgcaaggaa agatcgggtt ccgtttttcc cgcggattct ggtgcctgtg
61 gggccggtga cccaacacca tgaaggaaac gccactctca aactgcgaac gccgcttcct
121 actccgtgcc atcgaagaga agaagcggct ggatggcaga caaacctatg attataggaa
181 catcaggatc tcatttggaa cagattacgg atgctgcatt gtggaacttg gaaaaacaag
241 agttcttgga caggtttcct gtgaacttgt gtctccaaaa ctcaatcggg caacagaagg
301 tattcttttt tttaaccttg aactctctca gatggccgct ccagctttcg aacctggcag
361 gcagtcagat ctcttggtga agttgaatcg actcatggaa agatgtctaa gaaattcgaa
421 gtgtatagac actgagtctc tctgtgttgt tgctggtgaa aaggtttggc aaatacgtgt
481 agacctacat ttattaaatc atgatggaaa tattattgat gctgccagca ttgctgcaat
541 cgtggcctta tgtcatttcc gaagacctga tgtctctgtc caaggagatg aagtaacact
601 gtatacacct gaagagcgtg atcctgtacc attaagtatc caccacatgc ccatttgtgt
661 cagttttgcc tttttccagc aaggagcata tttattggtg gatcccaatg aacgagaaga
721 acgtgtgatg gatggcttgc tggtgattgc catgaacaaa catcgagaga tttgtactat
781 ccagtccagt ggtgggataa tgctactaaa agatcaagtt ctgagatgca gtaaaatcgc
841 tggtgtgaaa gtagcagaaa ttacagagct aatattgaaa gctttggaga atgaccaaaa
901 agtaaggaaa gaaggtggaa agtttggttt tgcagagtct atagcaaatc aaaggatcac
961 agcatttaaa atggaaaagg cccctattga tacctcggat gtagaagaaa aagcagaaga
1021 aatcattgct gaagcagaac ctccttcaga agttgtttct acacctgtgc tatggactcc
1081 tggaactgcc caaattggag agggagtaga aaactcctgg ggtgatcttg aagactctga
1141 gaaggaagat gatgaaggcg gtggtgatca agctatcatt cttgatggta taaaaatgga
1201 cactggagta gaagtctctg atattggaag ccaagatgct cccataatac tctcagatag
1261 tgaagaagaa gaaatgatca ttttggaacc agacaagaat ccaaagaaaa taagaacaca
1321 gaccaccagt gcaaaacaag aaaaagcacc aagtaaaaag ccagtgaaaa gaagaaaaaa
1381 gaagagagct gccaattaaa gctaacagtt gtatatctgt atatataact attaaaaggg
1441 atatttattc cattctgaaa aaaaaaaaaa aaa
//