LOCUS BC142669 2306 bp mRNA linear HUM 11-JUN-2007
DEFINITION Homo sapiens ankyrin repeat and sterile alpha motif domain
containing 1B, mRNA (cDNA clone IMAGE:40148178), complete cds.
ACCESSION BC142669
VERSION BC142669.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2306)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2306)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Novartis Institute for Biomedical Research
cDNA Library Preparation: Novartis Institute for Biomedical
Research
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 306 Row: i Column: 9
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2306
/db_xref="H-InvDB:HIT000435372"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40148178"
/tissue_type="Donated clones,Novartis FGA collection"
/clone_lib="NIH_MGC_417"
/lab_host="DH5a"
/note="Vector: pCMV-SPORT6"
gene 1..2306
/gene="ANKS1B"
/gene_synonym="AIDA"
/gene_synonym="AIDA-1"
/gene_synonym="ANKS2"
/gene_synonym="cajalin-2"
/gene_synonym="EB-1"
/db_xref="GeneID:56899"
/db_xref="HGNC:HGNC:24600"
/db_xref="MIM:607815"
CDS 255..1499
/gene="ANKS1B"
/gene_synonym="AIDA"
/gene_synonym="AIDA-1"
/gene_synonym="ANKS2"
/gene_synonym="cajalin-2"
/gene_synonym="EB-1"
/codon_start=1
/product="ankyrin repeat and sterile alpha motif domain
containing 1B"
/protein_id="AAI42670.1"
/db_xref="GeneID:56899"
/db_xref="HGNC:HGNC:24600"
/db_xref="MIM:607815"
/translation="MMWQCHLSAQDYRYYPVDGYSLLKRFPLHPLTGPRCPVQTVGQW
LESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLGIGILNSGHRQRILQAIQLLPKM
RPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINVLKINLIG
HRKRILASLGDRLHDDPPQKPPRSITLRTGDWGEPSITLRPPNEATASTPVQYWQHHP
EKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVS
YKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDV
NLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVDL
LHASHTGQEPSERHTEEALRKF"
BASE COUNT 732 a 519 c 437 g 618 t
ORIGIN
1 ctccaacaat cacatagaac gcagaccagc ccaagctgac agcttgatat gccttcttct
61 gctgcctggt tttgggggct gtatgacgta ctggtcggta gtaaagatta atatgtaaga
121 aatgtggagc taggatcaag tcatactcca cagcctgcct ggcaaactat gttttacttc
181 tgactttgct ctctcgctga gaacattaat ctgtcaagct ggcgggctcc tttgatagca
241 actttcccag gggcatgatg tggcaatgcc acctctcagc ccaggactac cgctattacc
301 ccgtggacgg ctactccctg cttaaacgct tccctcttca tcctcttaca ggacccagat
361 gccctgtcca aacagtggga caatggttgg aaagcattgg gctacctcag tacgagaacc
421 acctgatggc taatggattt gacaatgtgc agtttatggg aagcaatgtt atggaagatc
481 aggatttgtt gggaattgga atccttaatt ctgggcacag acaaagaatt ctacaggcaa
541 tccagctcct tccaaagatg agacccattg ggcatgatgg ctaccatccc acctctgtag
601 ctgagtggct ggattccatt gaactgggcg actacaccaa agcctttcta attaatggct
661 acacttcgat ggacctgttg aaaaaaatct gggaggttga acttattaat gttttaaaaa
721 tcaatttgat tggccacagg aaacgtattt tggcatctct gggagacagg ctgcacgacg
781 atcccccaca gaagccccct cggtccatca ccctcaggac aggagactgg ggagaacctt
841 ccattacctt gcgacctccg aatgaagcca cagcctctac cccggtacag tactggcagc
901 atcacccaga aaagcttatc ttccagtcgt gtgattacaa agctttttat ttaggttcta
961 tgctgataaa agagcttagg gggacagaat caacccaaga tgcttgtgca aaaatgcggg
1021 ctaactgtca gaagtctaca gagcaaatga agaaggtccc tactattatt ctttctgtct
1081 catataaagg agtcaaattt attgatgcaa caaataagaa cataattgct gagcatgaaa
1141 ttcgtaatat ctcctgtgct gcccaggacc cagaagacct ctcaacattt gcctatatca
1201 caaaagattt gaagtctaat caccactact gtcatgtgtt tactgccttt gatgtgaatt
1261 tagcctatga aatcatccta accctgggac aggcattcga agtcgcttac cagctagcac
1321 tacaagcaag aaaaggggga cactcctcca cacttccaga aagctttgaa aacaaaccct
1381 ccaaacccat ccccaagccc cgcgttagca ttcgcaagtc cgtggatctt cttcatgcca
1441 gccataccgg gcaggaacca tcagagagac acactgagga ggcactcaga aaattttgat
1501 agaattgaat ttacatatag ctgataaagc ctaaatagaa aggttgatgt atttagcttg
1561 aatccttcac tttagtggtc taatcaacag ataaatgaca agcaaagaat gaaacaatcc
1621 aaaaatgttt ttcaaaacaa ttttgtgaat tttattttta caaaaatttt ttaaattcat
1681 attttaaaat gtataccaag gcaaaaaaat catataagct atatcataaa tacaagagtt
1741 tcaaaacata caagagacat ataatgtaaa aaaaaattat atatatgaag tccaatgtaa
1801 tttataatac aaaaaaatac agcaagggaa aatgctttag aaatgctcat ctgcaaacta
1861 caaaacaaaa tcctcctctt gaccgactgc atgaactgcc atgaaatttg cagctccatc
1921 atactaggta tctcttcttt cttcatgtta ccttgtcttt cttcccattt ttcttttaag
1981 acagggtctt gctatgtcac ccaggctgga ctcagactcc agggctcaag gaatcctcct
2041 gtcttagcct cccaaggagc tgggattaca ggcacgtgcc accgcacctg gctcctaatt
2101 tctttttaag acaagggcca ttcaaggctt tttaaaacct gatgtgtgtt gttatacttt
2161 ataacagtca gtggctttta attccaaaag gtaatacttt atactctgcc tacatgagat
2221 gagcccctaa cagtgtgtac aaataaaatt atgatttggg tattctaaaa aaaaaaaaaa
2281 aaaaaaaaaa aaaaaaaaaa aaaaaa
//