LOCUS BC142653 3317 bp mRNA linear HUM 11-JUN-2007
DEFINITION Homo sapiens very low density lipoprotein receptor, mRNA (cDNA
clone MGC:164880 IMAGE:40148037), complete cds.
ACCESSION BC142653
VERSION BC142653.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3317)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3317)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Novartis Institute for Biomedical Research
cDNA Library Preparation: Novartis Institute for Biomedical
Research
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 306 Row: g Column: 3.
FEATURES Location/Qualifiers
source 1..3317
/db_xref="H-InvDB:HIT000435356"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164880 IMAGE:40148037"
/tissue_type="Donated clones,Novartis FGA collection"
/clone_lib="NIH_MGC_417"
/lab_host="DH5a"
/note="Vector: pCMV-SPORT6"
gene 1..3317
/gene="VLDLR"
/gene_synonym="VLDLRCH"
/db_xref="GeneID:7436"
/db_xref="HGNC:HGNC:12698"
/db_xref="MIM:192977"
CDS 79..2616
/gene="VLDLR"
/gene_synonym="VLDLRCH"
/codon_start=1
/product="very low density lipoprotein receptor"
/protein_id="AAI42654.1"
/db_xref="GeneID:7436"
/db_xref="HGNC:HGNC:12698"
/db_xref="MIM:192977"
/translation="MGTSALWALWLLLALCWAPRESGATGTGRKAKCEPSQFQCTNGR
CITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSD
ESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFT
CSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWVCDDDADC
SDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSR
TCRPDQFECEDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDI
SKVCNQEQDCRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELIDRK
TCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRD
IRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKM
IDNVYNPAAIAVDWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPL
SGFVYWSDWGEPAKIEKAGMNGFDRRPLVTADIQWPNGITLDLIKSRLYWLDSKLHML
SSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLV
NNLNDAQDIIVYHELVQPSGKNWCEEDMENGGCEYLCLPAPQINDHSPKYTCSCPSGY
NVEENGRDCQRINVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGGYLMWRNWQHKN
MKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA"
BASE COUNT 999 a 692 c 810 g 816 t
ORIGIN
1 ttcggaagga ctggtaactt gtcgtgcgga gcgaacggcg gcggcggcgg cggcggcggc
61 accatccagg cgggcaccat gggcacgtcc gcgctctggg cgctctggct gctgctcgcg
121 ctgtgctggg cgccccggga gagcggcgcc accggaaccg ggagaaaagc caaatgtgaa
181 ccctcccaat tccagtgcac aaatggtcgc tgtattacgc tgttgtggaa atgtgatggg
241 gatgaagact gtgttgacgg cagtgatgaa aagaactgtg taaagaagac gtgtgctgaa
301 tctgacttcg tgtgcaacaa tggccagtgt gttcccagcc gatggaagtg tgatggagat
361 cctgactgcg aagatggttc agatgaaagc ccagaacagt gccatatgag aacatgccgc
421 atacatgaaa tcagctgtgg cgcccattct actcagtgta tcccagtgtc ctggagatgt
481 gatggtgaaa atgattgtga cagtggagaa gatgaagaaa actgtggcaa tataacatgt
541 agtcccgacg agttcacctg ctccagtggc cgctgcatct ccaggaactt tgtatgcaat
601 ggccaggatg actgcagcga tggcagtgat gagctggact gtgccccgcc aacctgtggc
661 gcccatgagt tccagtgcag cacctcctcc tgcatcccca tcagctgggt atgcgacgat
721 gatgcagact gctccgacca atctgatgag tccctggagc agtgtggccg tcagccagtc
781 atacacacca agtgtccagc cagcgaaatc cagtgcggct ctggcgagtg catccataag
841 aagtggcgat gtgatgggga ccctgactgc aaggatggca gtgatgaggt caactgtccc
901 tctcgaactt gccgacctga ccaatttgaa tgtgaggatg gcagctgcat ccatggcagc
961 aggcagtgta atggtatccg agactgtgtc gatggttctg atgaagtcaa ctgcaaaaat
1021 gtcaatcagt gcttgggccc tggaaaattc aagtgcagaa gtggagaatg catagatatc
1081 agcaaagtat gtaaccagga gcaggactgc agggactgga gtgatgagcc cctgaaagag
1141 tgtcatataa acgaatgctt ggtaaataat ggtggatgtt ctcatatctg caaagaccta
1201 gttataggct acgagtgtga ctgtgcagct gggtttgaac tgatagatag gaaaacctgt
1261 ggagatattg atgaatgcca aaatccagga atctgcagtc aaatttgtat caacttaaaa
1321 ggcggttaca agtgtgaatg tagtcgtggc tatcaaatgg atcttgctac tggcgtgtgc
1381 aaggcagtag gcaaagagcc aagtctgatc ttcactaatc gaagagacat caggaagatt
1441 ggcttagaga ggaaagaata tatccaacta gttgaacagc taagaaacac tgtggctctc
1501 gatgctgaca ttgctgccca gaaactattc tgggccgatc taagccaaaa ggctatcttc
1561 agtgcctcaa ttgatgacaa ggttggtaga catgttaaaa tgatcgacaa tgtctataat
1621 cctgcagcca ttgctgttga ttgggtgtac aagaccatct actggactga tgcggcttct
1681 aagactattt cagtagctac cctagatgga accaagagga agttcctgtt taactctgac
1741 ttgcgagagc ctgcctccat agctgtggac ccactgtctg gctttgttta ctggtcagac
1801 tggggtgaac cagctaaaat agaaaaagca ggaatgaatg gattcgatag acgtccactg
1861 gtgacagcgg atatccagtg gcctaacgga attacacttg accttataaa aagtcgcctc
1921 tattggcttg attctaagtt gcacatgtta tccagcgtgg acttgaatgg ccaagatcgt
1981 aggatagtac taaagtctct ggagttccta gctcatcctc ttgcactaac aatatttgag
2041 gatcgtgtct actggataga tggggaaaat gaagcagtct atggtgccaa taaattcact
2101 ggatcagagc tagccactct agtcaacaac ctgaatgatg cccaagacat cattgtctat
2161 catgaacttg tacagccatc aggtaaaaat tggtgtgaag aagacatgga gaatggagga
2221 tgtgaatacc tatgcctgcc agcaccacag attaatgatc actctccaaa atatacctgt
2281 tcctgtccca gtgggtacaa tgtagaggaa aatggccgag actgtcaaag gatcaatgtg
2341 accacagcag tatcagaggt cagtgttccc ccaaaaggga cttctgccgc atgggccatt
2401 cttcctctct tgctcttagt gatggcagca gtaggtggct acttgatgtg gcggaattgg
2461 caacacaaga acatgaaaag catgaacttt gacaatcctg tgtacttgaa aaccactgaa
2521 gaggacctct ccatagacat tggtagacac agtgcttctg ttggacacac gtacccagca
2581 atatcagttg taagcacaga tgatgatcta gcttgacttc tgtgacaaat gttgaccttt
2641 gaggtctaaa caaataatac ccccgtcgga atggtaaccg agccagcagc tgaagtctct
2701 ttttcttcct ctcggctgga agaacatcaa gatacctttg cgtggatcaa gcttgtgtac
2761 ttgaccgttt ttatattact tttgtaaata ttcttgtcca cattctactt cagctttgga
2821 tgtggttacc gagtatctgt aacccttgaa tttctagaca gtattgccac ctctggccaa
2881 atatgcactt tccctagaaa gccatattcc agcagtgaaa cttgtgctat agtgtatacc
2941 acctgtacat acattgtata ggccatctgt aaatatccca gagaacaatc actattctta
3001 agcactttga aaatatttct atgtaaatta ttgtaaactt tttcaatggt tgggacaatg
3061 gcaataggac aaaacgggtt actaagatga aattgccaaa aaaatttata aactaatttt
3121 gtacgtatga atgatatctt tgacctcaat ggaggtttgc aaagactgag tgttcaaact
3181 actgtacatt ttttttcaag tgctaaaaaa ttaaaccaag cagcttaaaa aaaaaaaaaa
3241 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3301 aaaaaaaaaa aaaaaaa
//