LOCUS BC142626 2575 bp mRNA linear HUM 25-JUL-2007
DEFINITION Homo sapiens collagen, type IV, alpha 1, mRNA (cDNA clone
IMAGE:40147488), complete cds.
ACCESSION BC142626
VERSION BC142626.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2575)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2575)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Novartis Institute for Biomedical Research
cDNA Library Preparation: Novartis Institute for Biomedical
Research
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 306 Row: c Column: 18
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2575
/db_xref="H-InvDB:HIT000435329"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40147488"
/tissue_type="Donated clones,Novartis FGA collection"
/clone_lib="NIH_MGC_417"
/lab_host="DH5a"
/note="Vector: pCMV-SPORT6"
gene 1..2575
/gene="COL4A1"
/gene_synonym="arresten"
/db_xref="GeneID:1282"
/db_xref="HGNC:HGNC:2202"
/db_xref="MIM:120130"
CDS 105..1664
/gene="COL4A1"
/gene_synonym="arresten"
/codon_start=1
/product="COL4A1 protein"
/protein_id="AAI42627.1"
/db_xref="GeneID:1282"
/db_xref="HGNC:HGNC:2202"
/db_xref="MIM:120130"
/translation="MGPRLSLWLLLLPAALLLHEEHSRAAAKGGCAGSGCGKCDCHGV
KGQKGERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYP
GNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPG
EILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKG
QMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKAEPGFQGMPGVGE
KGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIV
IGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGE
KGDRGFPGTSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQ
PGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGV
AGVPLLFQIHK"
BASE COUNT 707 a 609 c 712 g 547 t
ORIGIN
1 cgggacggtg cgtagcgctg gaagtccggc cttccgagag ctagctgtcc gccgcggccc
61 ccgcacgccg ggcagccgtc cctcgccgcc tcgggcgcgc caccatgggg ccccggctca
121 gcctctggct gctgctgctg cccgccgccc ttctgctcca cgaggagcac agccgggccg
181 ctgcgaaggg tggctgtgct ggctctggct gtggcaaatg tgactgccat ggagtgaagg
241 gacaaaaggg tgaaagaggc ctcccggggt tacaaggtgt cattgggttt cctggaatgc
301 aaggacctga ggggccacag ggaccaccag gacaaaaggg tgatactgga gaaccaggac
361 tacctggaac aaaagggaca agaggacctc cgggagcatc tggctaccct ggaaacccag
421 gacttcccgg aattcctggc caagacggcc cgccaggccc cccaggtatt ccaggatgca
481 atggcacaaa gggggagaga gggccgctcg ggcctcctgg cttgcctggt ttcgctggaa
541 atcccggacc accaggctta ccagggatga agggtgatcc aggtgagata cttggccatg
601 tgcccgggat gctgttgaaa ggtgaaagag gatttcccgg aatcccaggg actccaggcc
661 caccaggact gccagggctt caaggtcctg ttgggcctcc aggatttacc ggaccaccag
721 gtcccccagg ccctcccggc cctccaggtg aaaagggaca aatgggctta agttttcaag
781 gaccaaaagg tgacaagggt gaccaagggg tcagtgggcc tccaggagta ccaggacaag
841 ctcaagttca agaaaaagga gacttcgcca ccaagggaga aaagggccaa aaagctgaac
901 ctggatttca ggggatgcca ggggtcggag agaaaggtga acccggaaaa ccaggaccca
961 gaggcaaacc cggaaaagat ggtgacaaag gggaaaaagg gagtcccggt tttcctggtg
1021 aacccgggta cccaggactc ataggccgcc agggcccgca gggagaaaag ggtgaagcag
1081 gtcctcctgg cccacctgga attgttatag gcacaggacc tttgggagaa aaaggagaga
1141 ggggctaccc tggaactccg gggccaagag gagagccagg cccaaaaggt ttcccaggac
1201 taccaggcca acccggacct ccaggcctcc ctgtacctgg gcaggctggt gcccctggct
1261 tccctggtga aagaggagaa aaaggtgacc gaggatttcc tggtacatct ctgccaggac
1321 caagtggaag agatgggctc ccgggtcctc ctggttcccc tgggccccct gggcagcctg
1381 gctacacaaa tggaattgtg gaatgtcagc ccggacctcc aggtgaccag ggtcctcctg
1441 gaattccagg gcagccagga tttataggcg aaattggaga gaaaggtcaa aaaggagaga
1501 gttgcctcat ctgtgatata gacggatatc gggggcctcc cgggccacag ggacccccgg
1561 gagaaatagg tttcccaggg cagccagggg ccaagggcga cagaggtttg cctggcagag
1621 atggtgttgc aggagtgcca ttgctttttc agatccataa atgaaatatc cggatcacat
1681 tgacatgaaa cctttcaatg gaacaaaata ccagcttctt agcttttgta gtttgtttta
1741 aaagaatcca ctaaatagaa gagcataata ataatcttga attttgaagg acattatttt
1801 cttgcatata atgacttctg tttctgaagt tttgaaatct caaggcattg ttcctctcgt
1861 attttctttg ttcttctgag ctttgcgagc atggactggt ttccacaatt cctttcattc
1921 ctttttttct ttttgtaaga tattgaaagt caaatttcag aattattcat ttctgatgta
1981 gcccttcaaa ttttttaatt tttaaagata ttgctggaag cttctacaaa agaaaaccag
2041 ggcaaaagcg agttgaaata gcaatgaccc agctggaatt cagcaatcat tttctgcttt
2101 tgaagttaga tcttgggctt ttgctctcca gaacttccct ggtgcctggg gagctgagtt
2161 agaagttgca attgtttaag atatatctaa ataaattaga agttcaaata actgggtagc
2221 cctgactgta gtggggatca aagacagaag aactttgaag gaagcagaaa aggacgtttt
2281 taacctctat gcaccgcttc atctcctggg ctttcctggt ggacttcctg cctcaactct
2341 ggctgaaact cagtctagac atatctaata aaagacggaa aaagaggaaa gaggtgagaa
2401 agaaggaata ttgaggaaag atcataatat agaagaaaag aaagaaaaca tacaacccca
2461 attctactcc ttatgccttc atcaggagct cctttctttc cggagttgga aaaagtctct
2521 aaaaataaat ttatgggtaa ataattcaaa aaaaaaaaaa aaaaaaaaaa aaaaa
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