LOCUS BC141823 2074 bp mRNA linear HUM 08-MAY-2007
DEFINITION Homo sapiens apolipoprotein L, 1, mRNA (cDNA clone MGC:164925
IMAGE:40148156), complete cds.
ACCESSION BC141823
VERSION BC141823.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2074)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2074)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Novartis Institute for Biomedical Research
cDNA Library Preparation: Novartis Institute for Biomedical
Research
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 306 Row: h Column: 24.
FEATURES Location/Qualifiers
source 1..2074
/db_xref="H-InvDB:HIT000435178"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:164925 IMAGE:40148156"
/tissue_type="Donated clones,Novartis FGA collection"
/clone_lib="NIH_MGC_417"
/lab_host="DH5a"
/note="Vector: pCMV-SPORT6"
gene 1..2074
/gene="APOL1"
/gene_synonym="APO-L"
/gene_synonym="APOL-I"
/db_xref="GeneID:8542"
/db_xref="HGNC:HGNC:618"
/db_xref="MIM:603743"
CDS 124..1320
/gene="APOL1"
/gene_synonym="APO-L"
/gene_synonym="APOL-I"
/codon_start=1
/product="APOL1 protein"
/protein_id="AAI41824.1"
/db_xref="GeneID:8542"
/db_xref="HGNC:HGNC:618"
/db_xref="MIM:603743"
/translation="MEGAALLRVSVLCIWMSALFLGVGVRAEEAGARVQQNVPSGTDT
GDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAE
LPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSKLEDNIRRLRA
LADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITA
ALTGITSSTIDYGKKWWTQAQAHDLVIKSLDKLKEVKEFLGENISNFLSLAGNTYQLT
RGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVK
LTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKIL
QADQEL"
BASE COUNT 611 a 479 c 556 g 428 t
ORIGIN
1 ggaggacctg tctggttatt atacagacgc ataactggag gtgggatcca cacagctcag
61 aacagctgga tcttgctcag tctctgccag gggaagattc cttggaggag gccctgcagc
121 gacatggagg gagctgcttt gctgagagtc tctgtcctct gcatctggat gagtgcactt
181 ttccttggtg tgggagtgag ggcagaggaa gctggagcga gggtgcaaca aaacgttcca
241 agtgggacag atactggaga tcctcaaagt aagcccctcg gtgactgggc tgctggcacc
301 atggacccag agagcagtat ctttattgag gatgccatta agtatttcaa ggaaaaagtg
361 agcacacaga atctgctact cctgctgact gataatgagg cctggaacgg attcgtggct
421 gctgctgaac tgcccaggaa tgaggcagat gagctccgta aagctctgga caaccttgca
481 agacaaatga tcatgaaaga caaaaactgg cacgataaag gccagcagta cagaaactgg
541 tttctgaaag agtttcctcg gttgaaaagt aagcttgagg ataacataag aaggctccgt
601 gcccttgcag atggggttca gaaggtccac aaaggcacca ccatcgccaa tgtggtgtct
661 ggctctctca gcatttcctc tggcatcctg accctcgtcg gcatgggtct ggcacccttc
721 acagagggag gcagccttgt actcttggaa cctgggatgg agttgggaat cacagcagct
781 ttgaccggga ttaccagcag taccatagac tacggaaaga agtggtggac acaagcccaa
841 gcccacgacc tggtcatcaa aagccttgac aaattgaagg aggtgaagga gtttttgggt
901 gagaacatat ccaactttct ttccttagct ggcaatactt accaactcac acgaggcatt
961 gggaaggaca tccgtgccct cagacgagcc agagccaatc ttcagtcagt accgcatgcc
1021 tcagcctcac gcccccgggt cactgagcca atctcagctg aaagcggtga acaggtggag
1081 agagttaatg aacccagcat cctggaaatg agcagaggag tcaagctcac ggatgtggcc
1141 cctgtaagct tctttcttgt gctggatgta gtctacctcg tgtacgaatc aaagcactta
1201 catgaggggg caaagtcaga gacagctgag gagctgaaga aggtggctca ggagctggag
1261 gagaagctaa acattctcaa caataattat aagattctgc aggcggacca agaactgtga
1321 ccacagggca gggcagccac caggagagat atgcctggca ggggccagga caaaatgcaa
1381 actttttttt ttttccgaga ctccatctca aaaaaaaaaa aaaaaagaat atattgacgg
1441 aagaatagag aggaggcttg aaggaaccag caatgagaag gccaggaaaa gaaagagctg
1501 aaaatggaga aagcccaaga gttagaacag ttggatacag gagaagaaac agcggctcca
1561 ctacagaccc agccccaggt tcaatgtcct ccgaagaatg aagtctttcc ctggtgatgg
1621 tcccctgccc tgtctttcca gcatccactc tcccttgtcc tcctgggggc atatctcagt
1681 caggcagcgg cttcctgatg atggtcgttg gggtggttgt catgtgatgg gtcccctcca
1741 ggttactaaa gggtgcatgt cccctgcttg aacactgaag ggcaggtggt gggccatggc
1801 catggtcccc agctgaggag caggtgtccc tgagaaccca aacttcccag agagtatgtg
1861 agaaccaacc aatgaaaaca gtcccatcgc tcttacccgg taagtaaaca gtcagaaaat
1921 tagcatgaaa gcagtttagc attgggagga agctcagatc tctagagctg tcttgtcgcc
1981 gcccaggatt gacctgtgtg taagtcccaa taaactcacc tactcatcaa aaaaaaaaaa
2041 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//