LOCUS BC140919 4338 bp mRNA linear HUM 30-JUN-2008
DEFINITION Homo sapiens dachsous 2 (Drosophila), mRNA (cDNA clone
IMAGE:9056731), complete cds.
ACCESSION BC140919
VERSION BC140919.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4338)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4338)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 684 Row: a Column: 17
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..4338
/db_xref="H-InvDB:HIT000501655"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:9056731"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_313"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: ACGTTTCG"
gene 1..4338
/gene="DCHS2"
/gene_synonym="CDHJ"
/gene_synonym="PCDHJ"
/db_xref="GeneID:54798"
/db_xref="HGNC:HGNC:23111"
CDS 49..4155
/gene="DCHS2"
/gene_synonym="CDHJ"
/gene_synonym="PCDHJ"
/codon_start=1
/product="DCHS2 protein"
/protein_id="AAI40920.1"
/db_xref="GeneID:54798"
/db_xref="HGNC:HGNC:23111"
/translation="MSPCGRKMGEGRQQQRAPVGKLLLLPGRRDTPHGRSGSSGARTQ
RSLLWLLVHVWLWAASGSSAQLFNLTLSVDEGLPPDTLVGDIRAGLPAAQQQEGSGFF
LSEDSDDSPLLDDFHVHPDTGIIRTARRLDRERRDHYSFVAATLLGAVVQVEIRVNDV
NDHSPRFPLDSLQLDVSELSPPGTAFRLPGAHDPDAGLFSTQGYTLVQPSDLPKDPAG
PFFQLRYRTPGPLPSPLLPGSSSPLEPLDLVLLRRLDREEAAAHRLQIEAWDGGRPRR
TGLLSVELRVLDENDNPPVFEQDEYRAAVREDAQPGAEVCRVRATDRDLGPNGFVRYS
VRARQVPGAGSGGGALGDAAYFAVEELSGVVRVWRPLDREAQAWHQLVVEARDGGAEP
EVATVRVSIAVLDVNDNRPAIHVLFLTEGGVARVSEGARPGDYVARVSVSDADCDWEK
EDEATGELGVGLGDGSISLSLEGGEGDFALLPGGPPGVFFLCVEGPLDRESRDLYELL
LVATDAGSPPLSTEETLLLRVADLNDQPPLFSQQHYKASVSEAAAPGTVVMWVSASDA
DEAGSDHAWLRYTVVQLSAPCNLGSLESKMVHTAECGPSFAIDSESGVISTIRALDRE
VQEAVELKVVAQDLGEPPLSATCLVSITVDDVNDNEPIFWRQVYNATIAEHAPVGHCF
LQVTASDADSGLYGFIEYSLYDGFLSYEAPQAFRIDPHDGQICVSQDIDRERDPATYD
LLVEAKDGGGLSAQAFVRVDLEDVNDNRPVFNPSTYVTSISDETQPGTEIINVLATDQ
DSGIYGTVAYELIPGNVSSLFTIDSTTGIIYLTLPLSHLESTTLLLMVSAQDGGGLTA
VINADVTIHIFQTTLAPAEFERPKYTFLVYEDVPEDSPIGTVKAREPLNSSEPIFYRI
SSGDLGGKFSIHPRLGTIRTRKPLDHETQPVVVLTVQAQLGSAPACSSTEVNITVMDV
NDNHPAFLRTSDEIRISQTTPPGTALYLARAEDRDSGRNGLIRYSIASPQPGVFAIDR
ALGVLFLNGSLGAGEQRELTLTLRAEDQGVHPQAALLVLTVVIEKREHSPSWTFEHLV
YQVEVSESLSPMTQMLQTQAHPLGPQRAASPLRYSLEPSVDSAMFGIRPYTGWIYLRR
QFDYESTQTYNFRVFAWIPEDGFLQNVSTTVIVRVWDENDNSPTFLHDVLFLKVEESP
VPQGVIGKITAIDMDSGKNGQLLYFLLSDGKFFKMNPNTGELINWVALDREHRGHHEM
TVLVTDRGSPPRNATMAVYVSVTDINDNRPFFPQCLPGKELHVKVLEGQPVNMLVTTV
FAKDPDEGNNAEVTYSVSSARHMPLKGKTAFGKQSCKKTNKQTNKILT"
BASE COUNT 941 a 1235 c 1259 g 903 t
ORIGIN
1 cacaagctgg cagttacccg agagccttcc caaggagctg gaggagaaat gagcccttgt
61 gggcggaaga tgggcgaagg gcgtcagcag cagcgggctc cggtcgggaa gctccttctg
121 ctccccggga ggagagatac accccatggg cggtcaggca gcagcggcgc caggacgcag
181 cgctccctgc tctggctctt ggtgcacgtg tggctgtggg cggcctcggg ctcctctgcc
241 cagttgttca acctcaccct ttccgtagat gaggggcttc ccccggacac gctggtaggt
301 gacatccgcg ccgggctgcc ggccgcgcag cagcaggagg ggagcggctt ctttctgtcg
361 gaggactccg atgactcccc gctgctggac gacttccacg tgcacccgga caccggcatc
421 atccgcactg cgcggcgcct ggaccgcgag cggcgggacc actacagctt cgtcgccgcc
481 acgctgctgg gcgctgtggt gcaggtggag attcgcgtca acgacgtgaa tgaccactcg
541 ccccgctttc ccctcgactc cctgcaactc gacgtctccg agctcagccc gccagggacc
601 gccttccgcc tgccaggtgc ccacgatccg gacgccggac tgttcagcac tcagggctac
661 accctggtgc aaccgtccga cctgcccaag gaccccgcag gcccgttctt ccagttgcgc
721 taccggactc cggggccact accgtcaccg cttttgccag gctcctcgtc acccctggag
781 cctctagatc tggtgctgct gcggcgcttg gaccgagagg aggcggcggc gcaccggctg
841 cagatcgagg catgggacgg cggccgaccc cggcgcaccg gcctcctgag cgtggagctg
901 cgcgtgttgg atgagaacga caacccgccg gtctttgagc aggacgagta ccgcgccgcg
961 gtgcgcgagg acgcccagcc gggcgccgag gtctgtcgcg tgcgcgccac cgaccgcgac
1021 ctggggccca atggcttcgt gcgctacagc gtccgcgccc ggcaagtgcc tggggcgggt
1081 agcggcggcg gggcactggg cgacgcggcc tacttcgcgg tggaggagct gagcggcgtg
1141 gtgcgagtgt ggagacctct ggaccgcgag gcacaggcct ggcaccagtt ggtggtggag
1201 gcccgcgatg gaggcgccga gcctgaggtt gccacggtgc gcgtgtccat cgccgtgctg
1261 gacgtgaatg acaaccggcc agcaattcac gtgctctttc tcacagaggg aggcgtcgcc
1321 cgtgtctctg aaggcgcccg accgggcgac tacgtggctc gcgtctcggt gtctgacgcg
1381 gactgtgact gggagaagga agatgaggcc acaggggagc ttggtgtggg tcttggagac
1441 gggagcatct cgctgtcctt ggaaggcgga gagggagact tcgcgttgct gcccggcggc
1501 cccccagggg tatttttcct ttgcgtggag gggcccctgg acagagagag ccgcgatctg
1561 tatgagttac tactggtggc cacggacgcg gggtccccgc cgctgagcac ggaggagacg
1621 ctgctactcc gggtcgctga cctcaatgac caaccacctc tcttcagcca acagcattac
1681 aaggcctcag tgtccgaggc cgcggcccct ggcactgtag tcatgtgggt cagcgcctcc
1741 gatgccgacg aggcaggcag tgatcacgcc tggctgcgct acactgtagt ccaactctcg
1801 gctccctgca atctcggctc cctggaatca aagatggtcc acaccgcaga gtgtggacca
1861 tcttttgcca ttgattccga aagcggtgtg atcagcacta tccgggctct agaccgagag
1921 gtccaggagg cggtggagct gaaagtggtg gcccaggacc tcggagagcc cccactctct
1981 gccacctgcc tggtgagcat caccgtagat gatgtgaatg acaatgagcc catcttctgg
2041 aggcaggtgt acaatgccac cattgcagag catgccccgg ttggacactg ctttctgcag
2101 gtgacagcct ctgatgcaga ttcaggactc tatggcttta ttgaatattc tctttatgat
2161 ggattcctga gctatgaagc acctcaggca ttccggatcg accctcatga tgggcaaatc
2221 tgtgtttctc aagatatcga cagggaaagg gatccagcta cctatgatct cctggtggaa
2281 gctaaggatg ggggtgggct aagtgcccaa gcctttgttc gtgtggacct ggaggacgtg
2341 aatgataatc gtcctgtgtt taacccatca acctatgtga cgagcatcag tgatgagacc
2401 cagccaggca ccgagatcat caatgttctt gccactgacc aggactctgg gatatatggg
2461 acagtggctt atgagcttat tccaggaaac gtgtcgtccc tttttaccat tgactccacc
2521 acaggaatta tttacttaac attacctctt agtcatttgg aatctaccac acttttgttg
2581 atggtctctg ctcaagacgg tggtgggctc acagctgtca ttaatgccga tgtcaccata
2641 cacattttcc agacaactct ggcacctgct gagtttgaaa ggcctaagta cactttctta
2701 gtttatgaag atgtgcctga agatagtccc attggaacag tgaaagcaag agagcccttg
2761 aactcctcag aaccaatctt ttacaggatt tcttctggtg atctcggcgg aaagttctcc
2821 attcacccgc ggctgggcac tattcgcacc cggaagcccc tggatcacga gacgcagccc
2881 gtggttgtgc tcacggtgca ggcgcagctc ggcagcgccc cagcctgcag cagcaccgag
2941 gtcaacataa cagtcatgga tgtcaatgac aaccacccag cgttcctcag gacctcggat
3001 gagattagaa tatcccagac cacgccccct ggcacagcct tgtacctcgc acgtgcggaa
3061 gacagagaca gtgggcggaa cggactcatc cggtactcca tcgccagccc gcagccaggc
3121 gtctttgcca tcgacagagc cctgggggtg ctgttcctca acggcagcct gggcgcgggc
3181 gagcagcggg agctcacgct gactctcagg gccgaggacc aaggcgtgca tcctcaggca
3241 gccctgctgg tgctgacagt cgttatcgag aaacgcgaac acagcccatc ctggactttc
3301 gaacatttgg tctatcaagt ggaagtcagt gagtctctct caccgatgac acaaatgctg
3361 caaacacagg cgcacccact tggcccccag cgtgcagcct cgcctcttag gtactcgctg
3421 gaacccagcg tagactctgc tatgtttgga atccgccctt acacgggctg gatttatttg
3481 cggcgacagt ttgactatga atccacccaa acatataatt ttagagtgtt tgcttggatc
3541 cccgaggacg gattcttgca aaatgtgagc actacagtca ttgttcgtgt ctgggatgag
3601 aatgacaatt cccccacctt cttgcatgat gtgttgtttt tgaaagtcga agagagccct
3661 gttccccaag gggtaatagg caaaattaca gctattgaca tggactctgg aaagaatgga
3721 cagctattat atttcctttt gtctgatgga aaattcttca agatgaatcc taatacagga
3781 gagttaatca attgggtggc actggatcgt gagcaccggg ggcaccatga gatgactgtg
3841 ctagtgacag accgcggctc cccaccacga aacgccacca tggcggttta cgtctcagtt
3901 actgacatca atgataacag gcccttcttc ccccagtgtc tccctggaaa ggagttacac
3961 gtgaaggttc tggaaggtca accagtaaat atgttggtta caactgtgtt tgcaaaggat
4021 cctgatgaag gaaataatgc agaagttaca tactcagtat cttcagctag acatatgcct
4081 ctgaagggaa aaacagcatt tgggaagcag tcgtgcaaaa aaacaaacaa acaaacaaac
4141 aaaatcctga cctgaatctg gtcagttctc tagatctgcc tcccaattta aggaaaacat
4201 aagaatagag gaacatatta tgctacacgt tggagatgca acagcaaatc tagatcatgg
4261 aaaatgtcag gatacaagtt ccagtttatt caacaaataa attgcaagga caaatagaga
4321 gatgggtggc aggaatcc
//