LOCUS BC140871 4714 bp mRNA linear HUM 12-MAY-2008
DEFINITION Homo sapiens GTPase activating Rap/RanGAP domain-like 4, mRNA (cDNA
clone MGC:176548 IMAGE:9021739), complete cds.
ACCESSION BC140871
VERSION BC140871.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4714)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4714)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 673 Row: o Column: 17.
FEATURES Location/Qualifiers
source 1..4714
/db_xref="H-InvDB:HIT000501612"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:176548 IMAGE:9021739"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_363"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO; Clone identification sequence
tag: CTCATCGC"
gene 1..4714
/gene="GARNL4"
/gene_synonym="RAP1GA3"
/gene_synonym="Rap1GAP2"
/db_xref="GeneID:23108"
/db_xref="HGNC:HGNC:29176"
CDS 47..2239
/gene="GARNL4"
/gene_synonym="RAP1GA3"
/gene_synonym="Rap1GAP2"
/codon_start=1
/product="GARNL4 protein"
/protein_id="AAI40872.1"
/db_xref="GeneID:23108"
/db_xref="HGNC:HGNC:29176"
/translation="MFGRKRSVSFGGFGWIDKTMLASLKVKKQELANSSDATLPDRPL
SPPLTAPPTMKSSEFFEMLEKMQGIKLEEQKPGPQKNKDDYIPYPSIDEVVEKGGPYP
QVILPQFGGYWIEDPENVGTPTSLGSSICEEEEEDNLSPNTFGYKLECKGEARAYRRH
FLGKDHLNFYCTGSSLGNLILSVKCEEAEGIEYLRVILRSKLKTVHERIPLAGLSKLP
SVPQIAKAFCDDAVGLRFNPVLYPKASQMIVSYDEHEVNNTFKFGVIYQKARQTLEEE
LFGNNEESPAFKEFLDLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFH
VSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETP
GTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFREFLLTKLTNAENACCKSDKFA
KLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGGHGGFLESFKRAIRVRSHSM
ETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVAATVKNQSRSPIKRRSGL
FPRLHTGSEGQGDSRARCDSTSSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPF
MKLKENGRAISRSSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTSPFKQEVFVYSPSPS
SESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSGAGH"
BASE COUNT 1026 a 1363 c 1309 g 1016 t
ORIGIN
1 acgtcgttgg gacatcgctg ggaccccggg ctctgcagcc acaaccatgt ttggccggaa
61 gcgcagtgtc tcctttgggg gcttcggatg gatcgacaag accatgctgg caagtctgaa
121 ggtcaagaag caggagctgg ccaacagctc ggatgcgacc ctcccagacc ggccgctctc
181 ccctcctctc acggcacctc ccaccatgaa gtcgtcggag ttctttgaga tgctggagaa
241 aatgcagggg atcaagcttg aagagcagaa gccgggaccc cagaagaaca aggacgacta
301 tatcccatac cccagcatcg acgaggttgt ggagaaggga ggcccgtacc ctcaggtcat
361 cctgccacag tttgggggct attggatcga ggacccggag aacgtgggca ccccaacatc
421 gctggggagc agcatctgtg aggaggagga agaggacaac ctcagcccca acacatttgg
481 ctacaagctc gagtgcaagg gtgaagccag ggcctaccgg aggcacttcc tggggaagga
541 tcatctaaac ttttactgta ccggcagcag cctggggaac ttgatcctgt ccgtcaagtg
601 cgaggaagca gaggggatcg agtacctccg ggtcatcctc aggtccaaac tgaagacggt
661 acatgagcgg atccccttgg ctggactgag caagcttccc agtgtccctc agattgcaaa
721 ggctttctgt gatgatgcag tgggactgag attcaatcct gtcctgtacc ccaaggcctc
781 ccaaatgatt gtgtcctatg atgagcatga agtcaacaac acattcaaat tcggagtcat
841 ttatcaaaaa gccaggcaga ccctggagga ggagctattt gggaacaatg aggagagccc
901 agcttttaag gagttcttgg acctgctggg ggacacgatc acactgcagg atttcaaagg
961 tttccgagga ggcctggacg tgacccacgg acagacaggg gtggaatcag tgtacacaac
1021 attccgggac agggagatca tgtttcacgt ttccacaaag ctgccattta ccgacggaga
1081 cgcccagcag ctccagagaa agagacacat tggaaatgac atcgtggcca tcatcttcca
1141 agaggaaaac acgccgtttg tcccagacat gatagcctcc aatttcttac atgcctacat
1201 cgtcgtgcag gtcgagaccc caggcacaga gaccccatcc tacaaggtct ctgtcactgc
1261 gcgggaagat gtgcccacct ttggtccacc tctgcccagt ccccccgttt tccagaaggg
1321 cccggaattc agggagtttc tgctcaccaa gctcaccaat gccgagaacg cctgctgcaa
1381 gtcggacaag tttgcaaagc tggaggaccg gaccagggct gccctcctgg acaaccttca
1441 cgatgagctc cacgcccaca cacaggccat gctgggactg ggcccagagg aggacaagtt
1501 tgagaatgga ggccacgggg ggttcctgga gtcttttaag agggccatcc gcgtacgcag
1561 ccactccatg gagaccatgg tgggcggcca gaagaagtcg cacagtgggg gcatccctgg
1621 cagcctcagc gggggcatct cccacaacag catggaggtc accaagacca ccttctcgcc
1681 tccagtggtg gcggcaacgg tgaagaacca gtcacggagt cccatcaagc gacgctcggg
1741 gctcttcccc cgcctgcaca cgggctcaga aggccagggc gacagccggg cacgatgtga
1801 cagcacatcc agcacaccca agaccccaga tggtggacac tcctctcagg agataaagtc
1861 tgagacctca tccaatccca gctctccgga aatctgcccc aacaaggaga agcccttcat
1921 gaagttgaag gaaaacggcc gtgccatctc ccgctcctcc tccagcacca gcagcgtcag
1981 cagcactgca ggggagggcg aggccatgga ggagggcgac agtgggggca gccagccgtc
2041 cacgacctca cccttcaagc aggaggtgtt tgtctacagc ccgtccccga gcagcgagag
2101 ccccagcctg ggggcagctg ccaccccgat catcatgagc cggagtccca cagatgccaa
2161 aagcagaaac tccccgagat cgaacctgaa attccgcttt gacaagctca gccatgccag
2221 ctctggtgcg ggtcactaat gtgaaagtgg agtccttcgc ctgtccaagg gaatcccctc
2281 ttctgtcctg gaaaaggctc ctgtaccagc agtttgggag tgccgtccac gaccctgaca
2341 gtcccagccc tgccgcccca tggccacgtg cccacagatg tgctgttggt ccaggtgtcc
2401 cagtctggcc acagccctgc ctccgccctc acctacatgc cctcccagcc cctcccatct
2461 ctggacgagg cctccttcct caggttcctc ctgctcctga cctcccagtg tgatgtccgg
2521 gtcctttatc atcctattca tcctggagag gaaaagtgtc gggcaaaggg ggatctgggg
2581 ggagctcagc agtgactggg gagctggtct gcctcagaga cagagtaggg ggtgggagca
2641 gagcctcggt gagggtcttg gccacagggc agtgccttcc tgaacgtggc aggctttact
2701 accaggaacg cactcggtgg tggaggcccc atgttcccag gagccaagat tcgtagcatc
2761 cttgaggcca tcctgataaa attcggcgct attgcccccg tagctctgga gctctaaacc
2821 gtctatctgc ttctgtgctg aacgcctttc ccatctgctg acgtaggccc agggctgccc
2881 tgcccctgct gccagtgtac tgtgagcggg gctccagcca gttcaagctc agagccagag
2941 ctggacgggc cagaactgcg ctgcacactt cctggactga ggcggggact ttgggtccca
3001 cccggtttct cctgattatg gctgctgtgg ggtgagggga gggaggggca gccccgaggc
3061 agtctcttcc ctttgagaag atattctccc ccttccgagt ctgcagcgcc gtgggcttct
3121 ctgccgatgg gcccgggttg gggttaaggt gggcatcctc caggtacaac gagcctgaag
3181 agcccctttc agtgcagacg gggctgcaga gtgacactgg ctgggcacct gccccacgac
3241 caatgacaag gatttccagc tgaatgcttt attcccatag ggatctggac ctgtgcccaa
3301 gatataaata ctacactttt tttttttttt tttaactgac attgtgaaat tctccctata
3361 gcttttgcca ttcaagcaac attgtgatct ttcttccccg ccacgtgtgt gggaatgatt
3421 gagtcctgtt tgcaagctgg agaggagctc tccctttgct agtactttct ctaaagtact
3481 agtctagtaa aatttattct tgttagaagg tcaacaaaat atctgtttag cttttatgaa
3541 gagtcaccgt agcagccccc acggctggaa agaggcctgt acgttctgga cgcgttttgt
3601 tggctgggct tctggaggca ctggcaaggt caaactgcat ttctttaaga acagttgcag
3661 gatctggctc gcctctgtgg gaagccggca ttacaggtgc ttggtggatg ggccgtgtca
3721 cattgccatc tggggtcctt tggggtttcc aggttgtcac catgctgtcc catttgggaa
3781 tcccatacct gcctgtcccc actgcgctgg ctgacccttg ctgcctgctg cctcttggga
3841 gggctttgtc cctgcctctg agctggtggg caggatggct gggtggcccc cagagaagca
3901 cagacctgag atggggtctc catgcccggt ttgctgttgg aatgatctga acaggacccc
3961 aaatgcctct tccctctggt catgcctcac tatctctagg agctccatcc tgtggcttcc
4021 agagtgtgca cttccagccc acccgggcag tgctgagagg gaggaggaga acaaggatgg
4081 cccagcctcc cctccctccc ctagaccacg gggcaggcag ctcgggttcc tggagggctg
4141 tttcccccac gctgtcccta catctgctct gatctaaaat gtctttcctt ttatgctgcg
4201 cccagtcttg gggctcaaag atttgcccaa acctcattgg ccctcgtgac taggctcatc
4261 tagatggtgc tcacgctggt gtttgaggca tttccactgt gatctccacg aggggatgtt
4321 ttccgggaca catctctggc tctgggaact gcctgactca ctgaagaaac tacttttcag
4381 gcactgtagg gtcacccata tgcctccagc tcagttgacg cttaaaaaca ggtgcagaaa
4441 agctcgcgat ggaaggtctt aatgagagtg tctgtctatg ccaatcatgt aaaatgacgt
4501 ttcttgaaaa agattcagtg gttcagcttt gtcagcatca tctcaacaca agcctgctgg
4561 ctctttttag catctcatcc aaccatgtca tcgtccagat gagaaatctt agcccaggtg
4621 aggggaataa cttgcttgag gtcacacagc tggctgttgg caaagctggg attagaaccc
4681 tcaacccagg gtcccttcct ctgcagcgcc taca
//