LOCUS BC140868 6192 bp mRNA linear HUM 12-MAY-2008
DEFINITION Homo sapiens thrombospondin, type I, domain containing 4, mRNA
(cDNA clone MGC:176545 IMAGE:9021736), complete cds.
ACCESSION BC140868
VERSION BC140868.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6192)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6192)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 673 Row: o Column: 14.
FEATURES Location/Qualifiers
source 1..6192
/db_xref="H-InvDB:HIT000501609"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:176545 IMAGE:9021736"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_364"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO with reversed insert; Clone
identification sequence tag: AGTTAAAG"
gene 1..6192
/gene="THSD4"
/gene_synonym="FVSY9334"
/gene_synonym="PRO34005"
/db_xref="GeneID:79875"
/db_xref="HGNC:HGNC:25835"
CDS 34..3090
/gene="THSD4"
/gene_synonym="FVSY9334"
/gene_synonym="PRO34005"
/codon_start=1
/product="thrombospondin, type I, domain containing 4"
/protein_id="AAI40869.1"
/db_xref="GeneID:79875"
/db_xref="HGNC:HGNC:25835"
/translation="MVSHFMGSLSVLCFLLLLGFQFVCPQPSTQHRKVPQRMAAEGAP
EDDGGGGAPGVWGAWGPWSACSRSCSGGVMEQTRPCLPRSYRLRGGQRPGAPARAFAD
HVVSAVRTSVPLHRSRDETPALAGTDASRQGPTVLRGSRHPQPQGLEVTGDRRSRTRG
TIGPGKYGYGKAPYILPLQTDTAHTPQRLRRQKLSSRHSRSQGASSARHGYSSPAHQV
PQHGPLYQSDSGPRSGLQAAEAPIYQLPLTHDQGYPAASSLFHSPETSNNHGVGTHGA
TQSFSQPARSTAISCIGAYRQYKLCNTNVCPESSRSIREVQCASYNNKPFMGRFYEWE
PFAEVKGNRKCELNCQAMGYRFYVRQAEKVIDGTPCDQNGTAICVSGQCKSIGCDDYL
GSDKVVDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPEGATKINITEMYKSNN
YLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLAEGPTNEIL
DVYMIHQQPNPGVHYEYVIMGTNAISPQVPPHRRPGEPFNGQMVTEGRSQEEGEQKGR
NEEKEDLRGEAPEMFTSESAQTFPVRHPDRFSPHRPDNLVPPAPQPPRRSRDHNWKQL
GTTECSTTCGKGSQYPIFRCVHRSTHEEAPESYCDSSMKPTPEEEPCNIFPCPAFWDI
GEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQ
IRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKLRPNDIENCDMGPCAKSWF
LTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPAEATPCDNGPCTGKVEW
FAGSWSQCSIECGSGTQQREVICVRKNADTFEVLDPSECSFLEKPPSQQSCHLKPCGA
KWFSTEWSMCSKSCQGGFRVREVRCLSDDMTLSNLCDPQLKPEERESCNPQDCVPEVD
ENCKDKYYNCNVVVQARLCVYNYYKTACCASCTRVANRQTGFLGSR"
BASE COUNT 1437 a 1738 c 1590 g 1427 t
ORIGIN
1 agagcccttg cttttgcctg gacccccagc atcatggttt cccatttcat ggggtctctc
61 agtgtcctgt gtttccttct gctgcttgga ttccagttcg tctgcccaca gccctccact
121 caacacagga aggtcccgca gcggatggcg gcggagggcg cccccgagga cgacggcggc
181 ggcggcgccc cgggagtgtg gggcgcctgg ggcccctggt cggcctgctc gcgtagctgc
241 agcggcggcg tgatggagca gacgcggccc tgcctgcccc gctcctaccg cctgcgcggc
301 ggccagcggc ctggcgcccc tgcgcgcgcc ttcgcggacc acgtggtgtc ggcggtgcgc
361 acgtcggtgc cactgcaccg gagccgcgac gagacgccag cgctggccgg tacggacgcc
421 agccgccagg gccccacggt gctgcgaggc agccggcacc cacagcccca gggcctcgaa
481 gtcactgggg acagaaggag caggacccgt ggtaccattg gccctggcaa gtatggctat
541 ggtaaggccc catatatctt accactgcag acagacactg cacacacgcc acagaggctc
601 cggagacaga agctctcatc ccgccattcc aggtcccagg gagcatcttc tgctaggcat
661 ggctacagtt caccagccca ccaggtcccc caacatgggc ctttgtacca aagtgacagt
721 ggccctcgct ctggactgca ggctgcggag gcccccatct accagctacc tttgacccat
781 gatcaaggct accctgcagc ttcaagtctc tttcacagcc cagaaacaag caacaaccac
841 ggtgtgggga cccatggggc aactcagagc ttctctcagc ctgcccgatc tacagcaatc
901 tcatgcatcg gggcctatcg gcagtacaag ctgtgcaaca ccaacgtatg tccagaaagc
961 agtagaagta tccgggaggt acagtgtgca tcctacaaca acaagccatt catgggccgg
1021 ttttatgagt gggaaccatt tgcagaagta aaaggcaatc gcaaatgtga gttgaactgc
1081 caggcaatgg gctaccgctt ctatgtacgg caagctgaga aagtcatcga tggcaccccc
1141 tgtgaccaga acggcacggc catctgtgtg tctgggcagt gcaagagcat tggctgtgat
1201 gactacttag gctccgacaa agtcgtggac aaatgtgggg tgtgtggagg agacaacacg
1261 ggctgtcagg ttgtgtcggg cgtgtttaag catgccctca ccagcctggg ctaccaccgc
1321 gtcgtggaga ttcccgaggg agccacgaaa atcaacatca cggagatgta caagagcaac
1381 aactatttgg ccctgagaag tcgttctgga cgctccatca tcaatgggaa ctgggcaatt
1441 gatcgaccag gaaaatacga gggcggaggg accatgttca cctacaagcg tccaaatgag
1501 atttcgagca ctgccggaga gtcctttttg gcggaaggtc ccaccaacga gatcttggat
1561 gtctacatga tacaccagca gccaaaccca ggcgtgcact acgagtacgt gatcatgggg
1621 accaacgcca tcagccccca ggtgccaccc cacaggagac caggggaacc cttcaatggc
1681 cagatggtga cagaaggcag gagccaggag gagggagaac agaaagggag gaacgaggag
1741 aaggaagact tgcgtgggga ggcccctgag atgttcacct cagaatcggc acagaccttc
1801 ccagtcaggc atccagacag attttctccc catcgaccgg acaacttggt gccaccagca
1861 ccgcagcccc cacggcgcag ccgggatcac aactggaagc agcttgggac aacagaatgt
1921 tccacgacct gtgggaaagg atcgcagtac cctattttcc gctgtgtgca cagaagcact
1981 catgaagagg ctcctgagag ttactgtgac tccagcatga agccgacccc cgaggaggag
2041 ccctgcaaca tcttcccttg cccagccttc tgggacatcg gggagtggtc tgagtgcagc
2101 aagacctgtg gcctgggcat gcagcaccgc caggttctgt gccgccaggt gtacgccaac
2161 cgcagcctga cggtgcagcc ctaccgctgc cagcacctgg agaaacctga gaccaccagc
2221 acctgccaac tcaagatctg cagcgagtgg cagatccgga ccgactggac ctcgtgctcg
2281 gtgccctgcg gcgtgggaca gaggacccgt gatgtgaagt gtgtgagcaa cattggggat
2341 gtggttgacg atgaggaatg caacatgaag ctccggccga atgacattga gaactgcgac
2401 atgggaccct gtgccaagag ctggttcctc accgagtgga gcgaaaggtg ctcagcggag
2461 tgtggggccg gagtgcggac acgctcggtg gtgtgcatga ccaaccatgt cagcagcctg
2521 cccctggagg gctgtgggaa caaccggccg gcagaggcca ccccatgtga caacggaccc
2581 tgcacgggca aggtggagtg gtttgccggg agctggagtc agtgttccat cgagtgtggg
2641 agcgggacgc aacagaggga ggtgatttgt gttagaaaga atgcagacac ctttgaagtg
2701 ttggacccct ctgaatgttc tttcctggag aaacccccca gccagcaatc ctgccacctc
2761 aagccttgcg gagccaaatg gtttagcacc gaatggagca tgtgttccaa gagctgccag
2821 ggtggctttc gggtccggga agtgcggtgt ctgtctgatg acatgactct aagtaacctc
2881 tgtgaccctc agttgaaacc agaagagaga gaatcttgta accctcagga ctgtgtccct
2941 gaagttgatg aaaactgcaa ggacaagtac tacaactgca acgtggtggt ccaggcaaga
3001 ctctgtgtct acaactacta caagaccgcc tgctgtgcct cctgcacccg tgtggccaac
3061 aggcagacgg gcttcctggg gagcagataa cactcctgca cccccatcag tagggcagca
3121 tcactgcctt cccgggggct tcagcagtgc gcctggctgg ctgctgctcc accacgggcc
3181 ccctggccca ggcgctgcca accaacttag tcaccacccc tgcctccggt gaatgcaccc
3241 cgtggtaccc aggggctttt tacacaagat gtttgaaagc cacagtcagt cctttaagca
3301 tcaccatgta ctgatgatcc cctccttgga cctggcatct gctaatggtg ccctttgaaa
3361 gtcaagcagt gggaagtaca tggagctctc agccctgctc ccatctggca ccttcaagtc
3421 agcagatggg ccactgactg agcgctgccc cgtccctggt gctactggtc tttctaaact
3481 tagcaccctg gagagtccaa ggaggcagcg cccccaaccc agcgccccac taagccttgc
3541 tgacacgcgt gcatccctct gtgacctcag cccagatgtg cctgttttca ttctcaaaga
3601 cattagactg ttttcctgcc ctatgacaca gatagctcac atgaatattg tgctttattt
3661 agcaggtgta ctcacagata ctagctcctt agcagctcac aacatcccag aatgggaggc
3721 agggggtgac tcattatccc cattttactg acagggaaac tgaggctcaa cttaagtaat
3781 tgacctgcca ggtatattca cccatccagt ggaagagctg agtccccgcc ccagtcatct
3841 accagtatcc agcctggggc ctgtacttag atgtgaaagg tgctgcttca tttctgacca
3901 agagactgag aagtttccca gaatgcaaac aaagcccagg cccctgaaat ctttccggtc
3961 aagcctttat cccagcactc agttgttttg gatgtctgtt cctacttgcc cttaccccca
4021 aagttacaga tcctagttac aggactctgc cagctttgtt aaactgtccg tgagacaaga
4081 aagccattgg ggaaaccagg tgattgcctg aaattcttac tccgttccaa gtgctgttcc
4141 tcccaggaaa tcaaaggcca gggtccttat ggccgtggag ccttcccgac cacagagcca
4201 acttgtgaag cacacagctc tgcagcctgg gctctgccct gcctcagccg cctcccccac
4261 gctcttcacc acgttcctgg agagtccggc caacctgtcc cagccaaaac actgctgtat
4321 tagaaaaagt ctctttctgg tctttctggt tttgtttatg aatttccctc tgtggccaca
4381 aattcctccc ctcccccatg actcacagtc catatggccc acccccagac ttgagcacca
4441 agctctgcat taatgcagtt ggcctgcgac aaggagctgt ggacccttcc ccatctcttc
4501 caattcactt tccccaacta tccagttcca gaggccgcag gcctggaagg atgcagtgca
4561 tattgaaagg tggaccctct gaaaacagtt aagaggaata tatgtatgtt ttgcccatta
4621 agaaaaaatg gcaagctaaa caaatgttaa acttacagaa aatttgtctt atggtcctga
4681 gcatatttcc cttttagagc aagcctggat tcttagcaaa gtgtttcccc catttgctct
4741 tttagctgac aaatctgcca ctgtgatgat ggtttgcagc ttttggaagc agtatggcaa
4801 cctggcctga catgctcttt aggcttccac taacctgggg ctttcagaaa ttctatttgg
4861 cctttctgtg ggtagctttc cagcttctct tctagggagc cccaggcatc atttcccaaa
4921 agcatcccca tctcctgatt ctcttggaac tcctacagat aagcatcctg gcagaggccc
4981 aggctcccaa accgacaaag tgaaaagaga ccagagaggc caagcatatt gactggtgct
5041 gttcagggcc tgctcttttc cactcaccac ttgttttgct gcttgtcacg aggagagttg
5101 ttcctgtatg tggctgctct cagatctttc caagcaagcc agtcatttga agaggttttc
5161 ttttcatgct ggagggcagg ctaagatcaa tgagtggaag agagaaaggc tgttttagct
5221 caagttaaag gaacaccttc tagccatcaa agccgcccaa cagaggcaag ggccaccaca
5281 catgagagag cgctctgtcc ttaaagggaa ttctctgttg agtgggaggt gaacaccctg
5341 gttcttccaa ctcaggaatt ctcgtggctg ggctgggtca gtgatggctt tgtctcttta
5401 tgtctaaagt gccctatggc tgctgaaggt tacctaacca ttctttaaaa ggagaatgac
5461 cctccatggg aatggccagc ctgccaactg tgcaattgaa gaagacccga tggatcaacc
5521 ccatgtctcc cttggggaga aagtgcataa accaggggtc tctttttttt tttttcaaca
5581 aaccattgag ctgttcttgg agttcatctc tggagaggtt atacattatt agaagtttga
5641 ttattattat agtttgatca atttatttgt cttagagatc caatttttac taattcccta
5701 gttttttatt tcagcatctg aatgtctttc tccctagcac agtgcataca atcagggcct
5761 tgggtatttc cagtgataac tttccttgga gaggatctaa gaaaagccca gatttcggta
5821 gccatctccc tccaaatatg tctctttctg ctttcttagt gcccattatt tccccttctc
5881 ctttcttctg tcactgccat ctccttcttg gtcttcccat tgttctttaa ctggctgtaa
5941 tgtggaattg atatttacat tttgatacgg tttttttctt ggcctgtgta cgggattgcc
6001 tcatttcctg ctctgaattt taaaattaga tattaaagct gtcatatggt ttcctcacaa
6061 aagtcaacaa agtccaaaca aaaatagttt gccgttttac tttcatccat tgaaaaagga
6121 aattgtgcct cttgcagcct aggcaaagga catttagtac tatcgattct ttccaccctc
6181 acgatgactt gc
//