LOCUS BC140855 5987 bp mRNA linear HUM 10-JUN-2008
DEFINITION Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone
MGC:176532 IMAGE:9021723), complete cds.
ACCESSION BC140855
VERSION BC140855.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5987)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5987)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 673 Row: o Column: 1.
FEATURES Location/Qualifiers
source 1..5987
/db_xref="H-InvDB:HIT000501600"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:176532 IMAGE:9021723"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_363"
/lab_host="DH10B"
/note="Vector: pCR-XL-TOPO; Clone identification sequence
tag: TATTCAGT"
gene 1..5987
/gene="COL4A6"
/db_xref="GeneID:1288"
/db_xref="HGNC:HGNC:2208"
/db_xref="MIM:303631"
CDS 131..5032
/gene="COL4A6"
/codon_start=1
/product="COL4A6 protein"
/protein_id="AAI40856.1"
/db_xref="GeneID:1288"
/db_xref="HGNC:HGNC:2208"
/db_xref="MIM:303631"
/translation="MHPGLWLLLVTLCLTEELAAAGEKSYGKPCGGQDCSGSCQCFPE
KGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGPYGPKGDKGPMGVPGFL
GINGIPGHPGQPGPRGPPGLDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGDPV
LAPGSFKGMKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPDGNM
GLGFQGEKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPG
FPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLNGFQGIE
GQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLRGPSGVPGLPAL
SGVPGALGPQGFPGLKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEFETETLH
NKEPGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWGLIGLP
GLKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGKKGEPILSTIQGMPGDRGDSGSQG
FRGVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPG
LPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGL
PGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGMIGSP
GLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGE
RGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSI
VKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPGLPG
IPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGS
QGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGL
KGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEISGSPGPKGQPGE
SGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGMRGEPGLPGSS
GHQGAIGPLGSPGLIGPKGPSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKG
DRGFPGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSN
QGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGSSGLQGDPGQTPTAEAVQVP
PGPLGLPGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLP
GLQGPPGFEGAPGQQGPFGMPGMPGQSMRVGYTLVKHSQSEQVPPCPIGMSQLWVGYS
LLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIP
MMPVSQTQIPQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAG
AEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGELPV
SETLKAGQLHTRVSRCQVCMKSL"
BASE COUNT 1399 a 1599 c 1768 g 1221 t
ORIGIN
1 gggccacttc gtccacctac tctgttctga gtaaggaaac agcctccaag catcagcaga
61 gcccagatga gcacgggccg cggagccgct tagcagtctc ccgggaccca gctccggagg
121 agccgcaagc atgcaccctg ggttgtggct gctcctggtt acgttgtgcc tgaccgagga
181 actggcagca gcgggagaga agtcttatgg aaagccatgt gggggccagg actgcagtgg
241 gagctgtcag tgttttcctg agaaaggagc gagaggacga cctggaccaa ttggaattca
301 aggcccaaca ggtcctcaag gattcactgg ctctactggt ttatcgggat tgaaaggaga
361 aaggggtttc ccaggccttc tgggacctta tggaccaaaa ggagataagg gtcccatggg
421 agttcctggc tttcttggca tcaatgggat tccgggccac cctggacaac caggccccag
481 aggcccacct ggtctggatg gctgtaatgg aactcaagga gctgttggat ttccaggccc
541 tgatggctat cctgggcttc tcggaccacc cgggcttcct ggtcagaaag gatcaaaagg
601 tgaccctgtc cttgctccag gtagtttcaa aggaatgaag ggggatcctg ggctgcctgg
661 actggatgga atcactggcc cacaaggagc acccggattt cctggagctg taggacctgc
721 aggaccacca ggattacaag gtcctccagg gcctcctggt cctcttggtc ctgatgggaa
781 tatggggcta ggttttcaag gagagaaagg agtcaagggg gatgttggcc tccctggccc
841 agcaggacct ccaccatcta ctggagagct ggaattcatg ggattcccca aagggaagaa
901 aggatccaag ggtgaaccag ggcctaaggg ttttccaggc ataagtggcc ctccaggctt
961 cccgggcctt ggaactactg gagaaaaggg agaaaaggga gaaaagggaa tccctggttt
1021 gccaggacct aggggtccca tgggttcaga aggagtccaa ggccctccag ggcaacaggg
1081 caagaaaggg accctgggat ttcctgggct taatggattc caaggaattg agggtcaaaa
1141 gggtgacatt ggcctgccag gcccagatgt tttcatcgat atagatggtg ctgtgatctc
1201 aggtaatcct ggagatcctg gtgtacctgg cctcccaggc cttaaaggag atgaaggcat
1261 ccaaggccta cgtggccctt ctggtgtccc tggattgcca gcattatcag gtgtcccagg
1321 agccctaggg cctcagggat ttccagggct gaagggggac caaggaaacc caggccgtac
1381 cacaattgga gcagctggcc tccctggcag agatggtttg ccaggcccac caggtccacc
1441 aggcccacct agtccagaat ttgagactga aactctacac aacaaagagc cagggttccc
1501 tggtctccga ggagaacaag gtccaaaagg aaacctaggc ctcaaaggaa taaaaggaga
1561 ctcaggtttc tgtgcttgtg acggtggtgt tcccaacact ggaccacccg gggaaccagg
1621 cccacctggt ccatggggtc tcataggcct tccaggcctt aaaggagcca gaggagatcg
1681 aggctctggg ggtgcacagg gcccagcagg ggctccaggc ttagttgggc ctctgggtcc
1741 ttcaggaccc aaaggaaaga agggggaacc aattctcagt acaatccaag gaatgccagg
1801 agatcggggt gattctggct cccagggctt ccgtggtgta ataggagaac caggcaagga
1861 cggagtacca ggtttaccag gtctgccagg ccttccgggt gatggtggac agggcttccc
1921 aggtgaaaag gggttacctg gacttcctgg tgaaaaaggc catcctggtc cacctggcct
1981 cccaggaaat gggttaccag gacttcctgg accccgtggg cttcctggag ataaaggcaa
2041 ggatggatta ccgggacaac aaggccttcc cggatctaag ggaatcaccc tgccctgtat
2101 tattcctggg tcatacggtc catcaggatt tccaggcact cccggattcc caggccctaa
2161 agggtctcga ggcctccctg ggaccccagg ccagcctggg tcaagtggaa gtaaaggaga
2221 gccagggagt ccaggattgg ttcatcttcc tgaattacca ggatttcctg gacctcgtgg
2281 ggagaagggc ttgcctgggt ttcctgggct ccctggaaaa gatggcttgc ctgggatgat
2341 tggcagtcca ggcttacctg gttccaaggg agccactggt gacatctttg gtgctgaaaa
2401 tggtgctccg ggggaacaag gcctacaagg attaacaggg cacaaaggat ttcttggaga
2461 ctctggcctt ccaggactca agggtgtgca cgggaagcct ggcttactag gccccaaagg
2521 tgagcggggc agccctggga caccaggaca ggtgggacag ccaggcaccc caggatctag
2581 tggtccatat ggcatcaagg gcaaatctgg gctcccagga gcaccaggct tcccaggcat
2641 ctcaggacat cctggaaaga aaggaacaag aggcaagaaa ggtcctcctg gatcaattgt
2701 aaagaaaggg ctgccagggc taaaaggcct tcctggaaat ccaggcctag taggactgaa
2761 aggaagccca ggctctccag gggtcgctgg gttgccagcc ctctctggac ccaagggaga
2821 gaaggggtct gttggattcg taggttttcc aggaatacca ggtctgcctg gtattcctgg
2881 aacaagagga ttaaaaggaa ttccaggatc aactggaaaa atgggaccat ctggacgcgc
2941 tggtactcct ggtgaaaagg gagacagagg caatccgggg ccagtcggaa tacctagtcc
3001 aagacgtcca atgtcaaacc tttggctcaa aggagacaaa ggctctcaag gctcagccgg
3061 atccaatgga tttcctgggc caagaggtga caaaggagag gctggtcgac ctggaccacc
3121 aggcctacct ggagctcctg gcctcccagg cattatcaaa ggagttagtg gaaagccagg
3181 gccccctggc ttcatgggaa tccggggctt acctggcctg aaggggtcct ctgggatcac
3241 aggtttccca ggaatgccag gagaaagtgg ttcacaaggt atcagagggt cgcctggact
3301 cccaggagca tctggtctcc caggcctgaa aggagacaac ggccagacag ttgaaatttc
3361 cggtagccca ggacccaagg gacagcctgg cgaatctggt tttaaaggca caaaaggaag
3421 agatggacta ataggcaata taggcttccc tggaaacaaa ggtgaagatg gaaaagttgg
3481 tgtttctgga gatgttggcc ttcctggagc tccaggattt ccaggagttg ccggcatgag
3541 aggagaacca ggacttccag gttcttctgg tcaccaaggg gcaattgggc ctctaggatc
3601 ccccggatta ataggaccca aaggacctag tatcaccggt gtgcctgggc ctgctggtct
3661 ccctggaccc aaaggagaaa aaggatatcc aggaattggc atcggagctc cagggaagcc
3721 gggcctgaga gggcaaaaag gtgatcgagg tttcccaggt ctccagggcc ctgctggtct
3781 ccccggtgcc ccaggcatct ccttgccctc actcatagca ggacagcctg gtgaccccgg
3841 gcgaccaggc ctagatggag aacgaggccg cccaggcccc gctggacccc caggtccccc
3901 tgggccatcc tcgaatcaag gcgacaccgg agaccctggc ttccctggaa ttcctggacc
3961 taaagggcct aagggagacc aaggaattcc aggtttttct ggcctccctg gagagctagg
4021 actgaaaggc tcttctggcc tccaaggtga tcctggacaa acaccaactg cagaagctgt
4081 ccaggttcct cctggaccct tgggtctacc agggatcgat ggcatccctg gcctcactgg
4141 ggaccctggg gctcaaggcc ctgtaggcct acaaggctcc aaaggtttac ctggcatccc
4201 cggtaaagat ggccccagtg ggctcccagg cccacctggg gctcttggtg atcctggtct
4261 gcctggactg caaggccctc caggatttga aggagctcca gggcagcaag gccccttcgg
4321 gatgcctgga atgcctggcc agagcatgag agtgggctac acgttggtaa agcacagcca
4381 gtcggaacag gtgcccccgt gtcccatcgg gatgagccag ctgtgggtgg ggtacagctt
4441 actgtttgtg gaggggcaag agaaagccca caaccaggac ctgggctttg ctggctcctg
4501 tctgccccgc ttcagcacca tgcccttcat ctactgcaac atcaacgagg tgtgccacta
4561 tgccaggcgc aatgataaat cttactggct ctccactacc gcccctatcc ccatgatgcc
4621 cgtcagccag acccagattc cccagtacat cagccgctgc tctgtgtgtg aggcaccctc
4681 gcaagccatt gctgtgcaca gccaggacat caccatcccg cagtgccccc tgggctggcg
4741 cagcctctgg attgggtact ctttcctcat gcacactgcc gctggtgccg agggtggagg
4801 ccagtccctg gtctcacctg gctcctgcct agaggacttt cgggccactc ctttcatcga
4861 atgcagtggt gcccgaggca cctgccacta ctttgcaaac aagtacagtt tctggttgac
4921 cacagtggag gagaggcagc agtttgggga gttgcctgtg tctgaaacgc tgaaagctgg
4981 gcagctccac actcgagtca gtcgctgcca ggtgtgtatg aaaagcctgt agggtggcac
5041 ctgccactct gccccttgcc ctcccctgcc cctcacaaca gtcacctcac aaacctgaat
5101 ggtctgaaga aggaaggcct gagccccttt gcctgtcaag ttgtacattg gagtctcatt
5161 tgggctagac taccggacac tcgtcacccc agccctcggg tccatagaga tgagcccacc
5221 ctgctgagat ctgctgtcct gtttctgtca agctggtgct actgtttgat ttggatgatt
5281 gtgtgactat tcatggctac ctcagaaaga tttgatgggc cacaactgtc ttagactgct
5341 agctttctcc ttaccgtctt gatcggaaag ctcttcctaa tcgctaatca gtcatttctt
5401 catgtacaga ggtcagcaca cattatttgg cttaaaccag aacccagtgt ttccacactt
5461 aaattctcta accgaatatt catggatggc tcaagtctgc acagagcaag tcctcactct
5521 tcaaggaggc ccactgtgtc taggcaggca agagaattga aatgaggtgc cacccagtag
5581 cccagagtga gctttagctc tctctagaat gagcaagact gggccccaca tggcttagag
5641 aggcttgaag gccagcagct gggttggggg tggtggtcat taatggcata tggtcctaga
5701 caaaccatct cctccttgcc ggctccccct ccagccagag acagaggatg tggcctggtt
5761 caaagtaaag cagaggatgc aacaaatgtg gccaagccta tcaaaggaaa tgagaatgac
5821 agcctttttt cctgggccag aagtagaggg gtgggtgcgt aaggatgtgt gagttttgct
5881 tttgactcca ggaacaaaaa ggtaaatccc acatcccagt ttctcagaag tccctgttta
5941 ttccaaatgc catccagatg tgtgcaatgt ggcaaactga agctgca
//