LOCUS BC140850 3586 bp mRNA linear HUM 12-MAY-2008
DEFINITION Homo sapiens palladin, cytoskeletal associated protein, mRNA (cDNA
clone MGC:176527 IMAGE:9021718), complete cds.
ACCESSION BC140850
VERSION BC140850.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3586)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3586)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 673 Row: n Column: 20.
FEATURES Location/Qualifiers
source 1..3586
/db_xref="H-InvDB:HIT000501595"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:176527 IMAGE:9021718"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_361"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: AAGGTTAG"
gene 1..3586
/gene="PALLD"
/gene_synonym="CGI-151"
/gene_synonym="PNCA1"
/gene_synonym="SIH002"
/db_xref="GeneID:23022"
/db_xref="HGNC:HGNC:17068"
/db_xref="MIM:608092"
CDS 174..3494
/gene="PALLD"
/gene_synonym="CGI-151"
/gene_synonym="PNCA1"
/gene_synonym="SIH002"
/codon_start=1
/product="palladin, cytoskeletal associated protein"
/protein_id="AAI40851.1"
/db_xref="GeneID:23022"
/db_xref="HGNC:HGNC:17068"
/db_xref="MIM:608092"
/translation="MSGTSSHESFYDSLSDMQEESKNTDFFPGLSAFLSQEEINKSLD
LARRAIADSETEDFDSEKEISQIFSTSPASLCEHPSHKETKLGEHASRRPQDNRSTPV
QPLAEKQTKSISSPVSKRKPAMSPLLTRPSYIRSLRKAEKRGAKTPSTNVKPKTPHQR
KGGPQSQLCDKAANLIEELTSIFKAAKPRNRSPNGESSSPDSGYLSPKNQPSALLSAS
ASQSPMEDQGEMEREVKSPGARHCYQDNQDLAVPHNRKSHPQPHSALHFPAAPRFIQK
LRSQEVAEGSRVYLECRVTGNPTPRVRWFCEGKELHNTPDIQIHCEGGDLHTLIIAEA
FEDDTGRYTCLATNPSGSDTTSAEVFIEGASSTDSDSESLAFKSRAGAMPQAQKKTTS
VSLTIGSSSPKTGVTTAVIQPLSVPVQQVHSPTSYLCRPDGTTTAYFPPVFTKELQNT
AVAEGQVVVLECRVRGAPPLQVQWFRQGSEIQDSPDFRILQKKPRSTAEPEEICTLVI
AETFPEDAGIFTCSARNDYGSATSTAQLVVTSANTENCSYESMGESNNDHFQHFPPPP
PILETSSLELASKKPSEIQQVNNPELGLSRAALQMQFNAAERETNGVHPSRGVNGLIN
GKANSNKSLPTPAVLLSPTKEPPPLLAKPKLGFPKKASRTARIASDEEIQGTKDAVIQ
DLERKLRFKEDLLNNGQPRLTYEERMARRLLGADSATVFNIQEPEEETANQEYKVSSC
EQRLISEIEYRLERSPVDESGDEVQYGDVPVENGMAPFFEMKLKHYKIFEGMPVTFTC
RVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANP
QGRISCTGRLMVQAVNQRGRSPRSPSGHPHVRRPRSRSRDSGDENEPIQERFFRPHFL
QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIE
PVTSRDAGIYTCIATNRAGQNSFSLELVVAAKEAHKPPVFIEKLQNTGVADGYPVRLE
CRVLGVPPPQIFWKKENESLTHSTDRVSMHQDNHGYICLLIQGATKEDAGWYTVSAKN
EAGIVSCTARLDVYISRH"
BASE COUNT 1069 a 938 c 839 g 740 t
ORIGIN
1 gccacaacct ccattctccc agaaaagaag aaatgctcat ctgaaattca tcacctctct
61 ggagtcttca aactgaccaa gcattgaaaa gaacacagtt tcagaaaaca gtttccagtg
121 cctctggcct tcctactgaa agcagacaca gagtgcatga agaccgttca aatatgtcag
181 ggacctcctc ccatgagtcc ttctatgact ccctctcaga catgcaggaa gaaagcaaga
241 atactgactt cttcccgggc ctttctgctt tcctcagcca ggaagagata aacaagagtc
301 ttgacctggc ccggagagcc atagccgact ccgaaacaga agattttgac tcggaaaagg
361 agatctcgca gattttcagt acttctcctg caagcctctg tgaacatcct tcccataagg
421 agaccaaatt gggtgaacac gcctcgagga gacctcagga taacaggtca acacctgtcc
481 agcctctggc agagaaacaa actaagagta tctcttcacc tgtttcaaag aggaaacctg
541 ccatgtcacc cctgctcacc aggcccagct acatccggag cctccgaaag gctgaaaagc
601 gtggtgcaaa aactcccagc acaaacgtaa agcccaaaac gccacatcaa agaaagggtg
661 gcccccagag ccagctgtgt gacaaggcag ctaatttaat tgaggagcta acatccatat
721 ttaaagccgc aaagccaaga aacagaagcc caaatgggga gtcctcgtca ccagacagtg
781 ggtacctgtc tcctaaaaat cagccgtcag ccctgctgag tgcctcagcc agccagagcc
841 ctatggaaga ccaaggggag atggaaagag aggtcaagtc ccctggggcc aggcattgct
901 accaggacaa ccaggacttg gcagtgccac acaaccgcaa gtctcaccca cagccccaca
961 gcgccctcca cttcccagct gcacctcgat tcatccaaaa gctgaggagc caagaagtag
1021 cagaagggag ccgagtttat ctggagtgta gagtcactgg aaaccccact cctcgagtca
1081 gatggttctg tgaagggaaa gaactgcaca acactcctga tattcaaatc cactgtgagg
1141 gaggggacct ccataccctg atcatagcag aggcctttga ggacgacaca ggtcgctaca
1201 cctgtttggc tacgaatccc agcggctcag acacaacatc tgctgaggtg ttcattgaag
1261 gtgccagttc aacagattct gacagtgaaa gtttagcttt caaatcaaga gctggagcta
1321 tgccacaagc tcaaaagaaa acaacttctg tttccttgac aataggatca tcatctccaa
1381 agacaggggt gaccacagct gtgattcaac cactgtctgt ccctgtgcaa caggttcaca
1441 gtccaacttc atatctctgc cgacctgatg gaaccactac tgcctacttt cctcctgttt
1501 ttacaaagga actgcaaaac acagccgtgg cggaaggcca ggtggtggtt ctggagtgcc
1561 gggtccgtgg ggcaccccct ctgcaggtcc agtggtttcg gcaagggagt gaaatccaag
1621 actctccaga tttccgaatt ctacagaaaa aacctagatc tacagctgaa cctgaggaga
1681 tttgcaccct agttatcgct gagactttcc ctgaagatgc agggatcttt acatgttcag
1741 caagaaatga ttatggatca gcaaccagca ctgcccagct ggttgtcacc tcagccaaca
1801 ctgaaaactg tagttacgag tcaatgggag aatccaacaa tgaccacttc caacactttc
1861 cacctccccc tccaatcttg gagacaagtt ccttggagtt ggcttcaaag aaaccatctg
1921 agatccagca ggtgaacaac cctgagttag gcctgagcag ggcagccctt caaatgcaat
1981 tcaatgctgc tgagagggaa acgaacggag tccatcccag ccgtggagta aatggactga
2041 ttaacggcaa agctaacagt aataaatctc ttccaacacc agctgtcctg ctttcaccca
2101 ctaaggagcc accacctctg cttgccaaac caaaactagg atttccaaag aaggccagta
2161 gaactgctag aatagcctcc gatgaggaaa ttcaaggcac aaaggatgct gttattcaag
2221 acctggaacg aaaacttcgc ttcaaggagg acctcctgaa caatggccag ccgaggttaa
2281 catacgaaga aagaatggct cgtcgactgc taggtgctga cagtgcaact gtctttaata
2341 ttcaggagcc agaagaggaa acagctaatc aggaatacaa agtctccagc tgtgaacaga
2401 gactcatcag tgaaatagag tacaggctag aaaggtctcc tgtggatgaa tcaggtgatg
2461 aagttcagta tggagatgtg cctgtggaaa atggaatggc accattcttt gagatgaagc
2521 tgaaacatta caagatcttt gagggaatgc cagtaacttt cacatgtaga gtggctggaa
2581 atccaaagcc aaagatctat tggtttaaag atgggaagca gatctctcca aagagtgatc
2641 actacaccat tcaaagagat ctcgatggga cctgctccct ccataccaca gcctccaccc
2701 tagatgatga tgggaattat acaattatgg ctgcaaaccc tcagggccgc atcagttgta
2761 ctggacggct aatggtacag gctgtcaacc aaagaggtcg aagtccccgg tctccctcag
2821 gccatcctca tgtcagaagg cctcgttcta gatcaaggga cagtggagac gaaaatgaac
2881 caattcagga gcgattcttc agacctcact tcttgcaggc tcctggagat ctgactgttc
2941 aagaaggaaa actctgcaga atggactgca aagtcagtgg gttaccaacc ccagatctaa
3001 gctggcaact agatggaaag cccgtacgcc ctgacagtgc tcacaagatg ctggtgcgtg
3061 agaacggggt gcactctctg atcatagagc cagtcacgtc acgtgatgcc ggcatctaca
3121 catgtatagc taccaaccga gcaggacaga actcattcag cctggagctt gtggttgctg
3181 ctaaagaagc acacaaaccc cctgtgttta ttgagaagct ccaaaacaca ggagttgctg
3241 atgggtaccc agtgcggctg gaatgtcgtg tattgggagt gccaccacct cagatatttt
3301 ggaagaaaga aaatgaatca ctcactcaca gcactgaccg agtgagcatg caccaggaca
3361 accacggcta catctgcctg ctcattcagg gagccacaaa agaagatgct gggtggtata
3421 ctgtgtcagc caagaatgaa gcagggattg tgtcctgtac tgccaggctg gacgtttaca
3481 tttctcgaca ttaatagtga accacaccag gagaacaaat acccaaccca gtggcatcag
3541 cagtcacaga gcaccaagcc aaaaaaagta cggccctcag ccagtc
//