LOCUS BC139665 2978 bp mRNA linear VRT 27-JUN-2007
DEFINITION Danio rerio si:ch211-117l16.1, mRNA (cDNA clone MGC:162920
IMAGE:7439242), complete cds.
ACCESSION BC139665
VERSION BC139665.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 2978)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2978)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Will Talbot
cDNA Library Preparation: Dr. Yutaka Suzuki and Dr. Sumio Sugano
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 303 Row: i Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2978
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:162920 IMAGE:7439242"
/tissue_type="Embryo, whole, 2-8 hr, mixed wild type, pool
of 2500 embryos"
/clone_lib="NIH_ZGC_15"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..2978
/gene="si:ch211-117l16.1"
/db_xref="GeneID:557924"
/db_xref="ZFIN:ZDB-GENE-041210-107"
CDS 73..2481
/gene="si:ch211-117l16.1"
/codon_start=1
/product="si:ch211-117l16.1 protein"
/protein_id="AAI39666.1"
/db_xref="GeneID:557924"
/db_xref="ZFIN:ZDB-GENE-041210-107"
/translation="MSSWWGQLSESVNNSTVRLDNTSCFSSTQSTVLKGVNFGGIPVV
LLLDFTVFILLLSIFTLIRRKLWDYGRLALVAETDVFGDGRKRRYSRLTSSMSVEEPE
YEKGCCSWLTFIVNMDETLVQERCGVDAVHYLPFQKHLVTLLLIICVLSVSIILPVNL
SGDLLGTDPYNFGRTTIGNLQHDDKLLWLHTVFAVLYLMITVFLLRRYTSKMKGTKRE
IVRNTLFVRPIPRTSTDDSIKTHFMEAHPSCHVTSVNLCYDVAKLIDVNKNRKRAEKN
LRHYNRILQQLGRRELINPRPCSHLCCCCQRCQGCEEVDAIEFYSSQEAALHEEEVRL
KQGELHPLGMAFVTLQNEYMATYILKDFNALECGGGARGVVGEEMSRGIKCGCGREPQ
PSTRSAELGVPKWKVNYASHPHNIYWENLSVRGWRWLLRCVLLNTALFVLLFFLTTPS
IIISTMDKFNVTMPIYYLNSPIISQFFPTLMLWTFSALLPTIVYYSTLGEAHWTRSSE
NMSMMYKLYTFLIFMVLILPSLGLTSLAVFFRWLFDKQSEGQLRFECVFLADQGAFFV
NYVIAAALVGSGMELLRLPGLLLYIVRLALASSAAERKYVKQNQAYEFQYGAMYGWTL
CVFTVIMAYSIVCPLIVPFGLLYLLLKHLVDKHNLYFAYLPARLDRQVHLGAVNQALA
APIICLIWLYFFSVLRTGFMTGTSLFTLVVLCITVFICISYTCFGHFKYLSPHNYNVK
EEDEDADIVSENSSGLVYLPKVLNPDASFESSDECSPSHSYGTTDISPQFIGTEESSP
DSDI"
BASE COUNT 754 a 652 c 735 g 837 t
ORIGIN
1 gtgtgtagtt aaacttagct gacagcccga ccggttctgc acagtcctct cgcggaaaac
61 aaatccaccg agatgtcctc ctggtggggg cagctctctg agtcggtgaa taacagcact
121 gttcgtctgg acaacactag ctgcttcagt tccacgcaga gcaccgtact gaagggagtg
181 aattttggag gaattcctgt cgttctgctg cttgacttta cagtcttcat attgctgctt
241 tcgatcttca ctctgatcag aagaaaactg tgggattatg ggagactcgc tcttgttgcg
301 gagactgatg tgtttggcga tggtagaaaa cggcgttaca gtagattgac gtcatccatg
361 tctgttgagg agcctgaata tgagaagggt tgttgctcct ggctcacgtt tatcgttaat
421 atggatgaga ctttggtgca ggagagatgt ggtgtggatg cagtgcatta tctgcccttt
481 cagaagcatc tggtcactct gctcttgatc atctgtgtgc tgtctgtgtc catcatcctg
541 ccagtcaacc tatccgggga tctgctgggc actgatccct acaattttgg acggaccacc
601 atagggaatc ttcagcatga tgataagctg ctttggctgc acactgtgtt tgcagttctg
661 tatctgatga tcacggtgtt cctgctgagg cgctacacct cgaaaatgaa gggaaccaag
721 agagagattg tcagaaacac cctgtttgtg aggcctatac ccagaacatc cactgatgac
781 agtataaaaa ctcactttat ggaggcccac ccgtcatgtc acgtgactag tgttaacttg
841 tgctatgatg ttgccaaact gattgatgtg aacaaaaata gaaaacgggc tgaaaagaac
901 ctgcggcatt acaataggat actgcagcaa ctgggacgac gtgagctcat taaccctcgt
961 ccatgcagcc atttatgctg ctgctgccaa cgctgtcagg gttgtgaaga ggttgacgct
1021 atagagttct atagctcaca agaagctgct ttacatgaag aggaagtgag actgaagcag
1081 ggagagctgc atcccctggg catggctttc gtcaccctgc aaaatgagta tatggccact
1141 tatattctga aagatttcaa cgctcttgag tgtggaggcg gagccagggg tgtggttgga
1201 gaagaaatga gcagggggat taaatgtggg tgtggccggg agcctcagcc gtccactaga
1261 agtgcagagc tgggggtgcc gaaatggaaa gtgaattatg catctcaccc gcataatatc
1321 tactgggaga atttatcagt tcgtggctgg cgttggttgc tgcgctgtgt gttgctgaat
1381 accgcactct ttgtcctcct gttcttcctc acaacgccct ccatcatcat cagcaccatg
1441 gacaagttta acgtcactat gcccatttac tatctcaata gtcccattat cagccagttc
1501 ttccccactc tgatgctgtg gactttctct gccctgttgc ccactatagt ctattactct
1561 acactgggag aagctcattg gaccaggtcc agtgagaata tgagcatgat gtacaaactg
1621 tacaccttcc tgatcttcat ggtgttgatt ttgccatcgc tgggcctcac cagtttggcc
1681 gtgtttttcc gctggttgtt tgataagcag tctgaaggcc agctgaggtt tgagtgtgtg
1741 tttctagctg atcagggtgc gttctttgtg aattatgtga tcgcggcggc tctggtgggc
1801 tctggtatgg agctgctgcg gttgccaggt ttactgctct acattgtgcg tttggcactt
1861 gcaagttcag ctgctgagag gaaatatgtt aaacagaatc aggcatatga gtttcaatac
1921 ggagcgatgt atggatggac tctgtgcgtg ttcacggtca tcatggcata cagcatcgtc
1981 tgtcctctca tcgtcccctt cggtctgctg tatctgctgc tgaaacacct ggtggacaaa
2041 cacaacttgt acttcgctta cctgcccgcc cgcctcgatc gccaggttca cctgggagct
2101 gtcaatcaag cgctggctgc accaatcata tgtctgatct ggctttattt cttctctgtg
2161 ctcaggacag gcttcatgac gggcacctca ttgttcacgc tagtggtttt gtgcattacc
2221 gtctttatct gcataagtta cacctgcttt ggacacttca aatacctcag tccacacaac
2281 tacaatgtta aagaggaaga tgaagatgct gatatagttt cagagaactc atccggattg
2341 gtttatcttc ctaaagtgtt gaaccctgat gcatcgtttg agtcttcaga cgagtgcagt
2401 cctagtcatt catacgggac gacagacata agtccacaat tcatcgggac tgaggaaagc
2461 tctccagact cggatatata gcagcaataa tcaggcagcg tatcggacaa tcgctggtct
2521 ggaggaaacg gttattcgca gatttaggag ctggagaggt cagtttggag acggaggggg
2581 attgactgaa aaagattctg aagggaaata acactcatgt ttttcatgaa cactgagaga
2641 ccagaggaac aataatcata acctgccata taacaaatat taaggatttt tcgggggaat
2701 cagtacttta taaccaaaga attgccagtt caagacacag tccaaacatt tctgcattgc
2761 agaagcagct ttgccagtga gcgctttcca aatagcacaa atataacatc aaaaattatt
2821 tgaacacttg atgcttgtgc cttgttggag acaacttaac acactttata actgtacgtt
2881 tttgtgtgtg tgatgcattg tgattttttt aaagccaagt tttatacaga tgtgttaata
2941 tattgatatt aacaaacaga aaaaaaaaaa aaaaaaaa
//