LOCUS BC137432 1627 bp mRNA linear HUM 12-MAY-2008
DEFINITION Homo sapiens stearoyl-CoA desaturase 5, mRNA (cDNA clone MGC:169053
IMAGE:9021430), complete cds.
ACCESSION BC137432
VERSION BC137432.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1627)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1627)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: LLDM Plate: 673 Row: b Column: 20.
FEATURES Location/Qualifiers
source 1..1627
/db_xref="H-InvDB:HIT000501334"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:169053 IMAGE:9021430"
/tissue_type="Brain, cerebellum, PCR rescued clones"
/clone_lib="NIH_MGC_311"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CCCGTATT"
gene 1..1627
/gene="SCD5"
/gene_synonym="ACOD4"
/gene_synonym="FADS4"
/gene_synonym="HSCD5"
/gene_synonym="SCD2"
/db_xref="GeneID:79966"
/db_xref="HGNC:HGNC:21088"
/db_xref="MIM:608370"
CDS 225..1217
/gene="SCD5"
/gene_synonym="ACOD4"
/gene_synonym="FADS4"
/gene_synonym="HSCD5"
/gene_synonym="SCD2"
/codon_start=1
/product="stearoyl-CoA desaturase 5"
/protein_id="AAI37433.1"
/db_xref="GeneID:79966"
/db_xref="HGNC:HGNC:21088"
/db_xref="MIM:608370"
/translation="MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQN
IVWRNVVLMSLLHLGAVYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSY
RAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLF
VRKHRDVIEKGRKLDVTDLLADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWN
SYFLASILRYTISLNISWLVNSAAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHH
TFPFDYSASEFGLNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSSA"
BASE COUNT 334 a 472 c 445 g 376 t
ORIGIN
1 ggatacgcca gcaacagacg ccggccgcca agatctgcat ccctaggcca cgctaagacc
61 ctggggaaga gcgcaggagc ccgggagaag ggctggaagg aggggactgg acgtgcggag
121 aattcccccc taaaaggcag aagcccccgc ccccaccctc gagctccgct cgggcagagc
181 gcctgcctgc ctgccgctgc tgcgggcgcc cacctcgccc agccatgcca ggcccggcca
241 ccgacgcggg gaagatccct ttctgcgacg ccaaggaaga aatccgtgcc gggctcgaaa
301 gctctgaggg cggcggcggc ccggagaggc caggcgcgcg cgggcagcgg cagaacatcg
361 tctggaggaa tgtcgtcctg atgagcttgc tccacttggg ggccgtgtac tccctggtgc
421 tcatccccaa agccaagcca ctcactctgc tctgggccta cttctgcttc ctcctggccg
481 ctctgggtgt gacagctggt gcccatcgct tgtggagcca caggtcctac cgggccaagc
541 tgcctctgag gatatttctg gctgtcgcca actccatggc tttccagaat gacatcttcg
601 agtggtccag ggaccaccga gcccaccaca agtactcaga gacggatgct gacccccaca
661 atgcccgccg gggcttcttc ttctcccata ttgggtggct gtttgttcgc aagcatcgag
721 atgttattga gaaggggaga aagcttgacg tcactgacct gcttgctgat cctgtggtcc
781 ggatccagag aaagtactat aagatctccg tggtgctcat gtgctttgtg gtccccacgc
841 tggtgccctg gtacatctgg ggagagagtc tgtggaattc ctacttcttg gcctctattc
901 tccgctatac catctcactc aacatcagct ggctggtcaa cagcgccgcc cacatgtatg
961 gaaaccggcc ctatgacaag cacatcagcc ctcggcagaa cccactcgtc gctctgggtg
1021 ccattggtga aggcttccat aattaccatc acacctttcc ctttgactac tctgcgagtg
1081 aatttggctt aaattttaac ccaaccacct ggttcattga tttcatgtgc tggctggggc
1141 tggccactga ccgcaaacgg gcaaccaagc cgatgatcga ggcccggaag gccaggactg
1201 gagacagcag tgcttgaact tggaacagcc atcccacatg tctgccgttg caacctcggt
1261 tcatggcttt ggttacaata gctctcttgt acattggatc gtgggagggg gcagagggtg
1321 gggaaggaac gagtcaatgt ggtttgggaa tgtttttgtt tatctcaaaa taatgttgaa
1381 atacaattat caatgaaaaa actttcgttt ttttttttgt ttgttttgtt tttgagacag
1441 agtctcactc tgtcacccag gctggagtgc agtggcgcag tctcggctca ctgcagcctc
1501 cacctacctg gttcaagcaa ttctcctgcc tcagcctcct gagtagctga gattacagga
1561 gcctgccacc acacccagct aatttttttg tatttttagt agagacaggg tttcatcatg
1621 ttggcca
//