LOCUS BC136892 3497 bp mRNA linear HUM 11-FEB-2009
DEFINITION Homo sapiens collagen, type XXVIII, alpha 1, mRNA (cDNA clone
MGC:168506 IMAGE:9020883), complete cds.
ACCESSION BC136892
VERSION BC136892.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3497)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3497)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2007) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 13 Row: C Column: 14
single stranded.
FEATURES Location/Qualifiers
source 1..3497
/db_xref="H-InvDB:HIT000500872"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:168506 IMAGE:9020883"
/tissue_type="Pooled, cerebellum, kidney, placenta,
testis, lung, colon, liver, heart, thyroid, bladder,
uterus, PCR rescued clones"
/clone_lib="NIH_MGC_361"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: GCCTGTCT"
gene 1..3497
/gene="COL28A1"
/gene_synonym="COL28"
/db_xref="GeneID:340267"
/db_xref="HGNC:HGNC:22442"
/db_xref="MIM:609996"
CDS 108..3485
/gene="COL28A1"
/gene_synonym="COL28"
/codon_start=1
/product="collagen, type XXVIII, alpha 1"
/protein_id="AAI36893.1"
/db_xref="GeneID:340267"
/db_xref="HGNC:HGNC:22442"
/db_xref="MIM:609996"
/translation="MWNRYFVFYLLLLSAFTSQTVSGQRKKGPKSNLLARKSDVQGSI
CFIDIVFIVDSSESSKIALFDKQKDFVDSLSDKIFQLTPGRSLEYDIKLAALQFSSSV
QIDPPFSSWKDLQTFKQKVKSMNLIGQGTFSYYAISNATRLLKREGRKDGVKVVLLMT
DGIDHPKNPDVQSISEDARISGISFITIGLSTVVNEAKLRLISGDSSSEPTLLLSDPT
LVDKIQDRLDILFEKKCERKICECEKGDPGDPGPPGTHGNPGIKGERGPKGNPGNAQK
GEAGERGPGGIPGYKGDKGERGECGKPGIKGDKGSPGPYGPKGPRGIQGITGPPGDPG
PKGFQGNKGEPGPPGPYGSPGAPGIGQQGIKGERGQEGRPGAPGPIGVGEPGQPGPRG
PEGVPGERGLPGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVGPQGPMGIPG
IGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGS
IGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRG
LPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQG
PRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRG
VGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGE
RGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLE
LVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFS
SKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEK
LTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTL
KQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQD
EDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEALKPGNCGEYVVRW
YYDKQVNSCARFWFSGCNGSGNRFNSEKECQETCIQG"
BASE COUNT 1026 a 735 c 987 g 749 t
ORIGIN
1 cccaaccaca gtccttgctg ttggcattta ctcaactagt ctttaattcc tgtttgacaa
61 actttataag gtgctacaag acagatgatt tttcaccatc taccataatg tggaacagat
121 attttgtctt ctatctcctg cttttgtcag cgtttacgag tcaaacagta tccggacaaa
181 gaaagaaagg accaaaatca aatttgcttg caaggaaaag tgatgtccag ggctccattt
241 gtttcataga tattgtcttc atcgtggaca gctctgaaag ttctaaaatt gccctctttg
301 ataaacagaa agattttgtg gatagcttga gtgacaagat tttccaattg actcctggtc
361 gctccttgga atatgacatc aaactggcag cccttcagtt tagcagctct gtccaaattg
421 atccaccttt ttcttcctgg aaggacctgc agacatttaa gcagaaggtc aagtctatga
481 atttaatagg gcaaggtacc ttctcttatt atgccatttc caatgccact aggctactta
541 agagagaagg gcgtaaggat ggtgtgaaag tggttttgct gatgactgat ggcatcgacc
601 atccaaagaa tccagatgtt caaagtattt ctgaagatgc cagaatttca ggaatatcat
661 ttatcaccat tggactttct acggtagtca atgaagccaa acttcgtttg atttctgggg
721 attcatccag tgaacccact ttactgttga gtgatccaac ccttgtagat aaaattcaag
781 atcgtctgga tatcttattt gaaaagaagt gtgaacgcaa gatttgtgaa tgtgagaagg
841 gagatccagg tgatccaggg cctcctggta cacatggaaa tccaggtatc aaaggtgagc
901 gaggaccaaa aggaaacccg ggcaacgctc aaaaaggaga agctggagaa agaggtccag
961 ggggaattcc tgggtacaag ggtgacaagg gtgaacgtgg ggaatgtggt aaaccaggga
1021 taaaaggtga caagggatcc ccagggccat atggaccaaa gggacccaga ggaattcagg
1081 gaattactgg acctccagga gacccaggcc caaaggggtt tcaaggcaat aagggtgagc
1141 caggtcctcc tggtccttat ggttctccag gagctcctgg aattggacag caaggtatta
1201 agggagaaag aggccaagaa ggaagaccgg gagctccagg acccattgga gttggtgagc
1261 ctggacagcc aggtccccgt ggtcctgagg gagtaccagg agagaggggc ttacccggag
1321 aaggatttcc aggaccaaag ggtgaaaaag gttctgaagg accaactggc ccacagggat
1381 tacaaggcct gtcaatcaaa ggggagaagg gggatatagg acctgtggga ccccaaggac
1441 caatgggtat ccctggaatc gggagtcaag gggaacaggg aatccaaggt cctattggtc
1501 cacctggtcc acaagggccc gcaggacagg gcttacctgg ttccaaggga gaagtaggcc
1561 aaatgggacc tacaggccct cgaggaccag tgggaattgg agtacaaggt ccaaagggag
1621 agccaggctc aatagggctc ccaggacaac caggagtacc aggagaagat ggagctgcag
1681 ggaagaaggg agaagcgggg cttccgggag caagaggccc agaaggacca cctggaaaag
1741 gacagcctgg ccccaagggt gacgaaggca agaaagggag caaaggaaat caaggacaga
1801 ggggacttcc agggcccgaa ggaccaaagg gtgaaccggg cattatgggc ccttttggaa
1861 tgcctggaac atcaattcct ggaccacctg ggccaaaggg agatagagga ggacctggga
1921 tacctggatt taagggagaa cctggacttt ctattcgagg accaaagggt gtccaaggcc
1981 ctcggggacc agtgggtgct ccaggactca aaggtgatgg ctatcctggt gtgcctggac
2041 ctcgtggatt accaggaccc cctgggccga tgggtttacg tggagtggga gacactggag
2101 caaagggaga gcctggggtc agaggccctc caggtccttc tgggcctcgg ggcgtaggaa
2161 cccaagggcc aaagggtgat actgggcaga aaggcttgcc tggccctcct ggcccccctg
2221 gctatggatc acagggaatt aaaggggaac aaggaccaca aggcttccca ggcccaaagg
2281 gcacaatggg ccatggcctc ccaggccaga agggagagca cggagaacgg ggcgatgtgg
2341 gaaagaaagg tgataaagga gaaattggag agcctggatc tccaggaaaa cagggtttac
2401 aaggacccaa aggagaccta ggacttacaa aagaagaaat tatcaaactt attacagaaa
2461 tatgtggttg tgggcccaaa tgcaaagaga ctccactaga gctggtgttt gtgatcgaca
2521 gctcagaaag cgtggggcca gagaactttc agatcattaa aaattttgtg aagactatgg
2581 ctgaccgggt tgctctggac cttgccacgg cccgcatagg cataatcaac tatagccata
2641 aggtggagaa ggtggctaat ttgaagcagt tctccagcaa ggatgacttc aagttggctg
2701 tggacaacat gcagtatctg ggggaaggca catacacagc cactgctctg caagcagcca
2761 acgacatgtt tgaagatgca aggccaggtg taaaaaaagt ggccttggtc atcactgatg
2821 gacagacaga ttctcgtgat aaagagaaac tgacagaggt ggtgaagaat gccagtgaca
2881 ccaatgtgga gatatttgtg ataggggtgg tgaagaaaaa tgatcccaac tttgaaatat
2941 tccacaaaga aatgaatcta attgctactg acccagagca tgtttaccag tttgatgatt
3001 tctttaccct gcaagacacc ctgaagcaaa aattgtttca aaaaatttgt gaggattttg
3061 attcctatct cgttcaaatt tttggttcat cgtcacctca acctggattt gggatgtcag
3121 gggaagaact cagtgaatct actccagagc ctcaaaaaga aatttctgag tcattgagtg
3181 tcaccagaga ccaggatgaa gatgataagg ctccagagcc aacgtgggct gatgatctgc
3241 ctgccactac ctcatctgag gccaccacca cccccaggcc actgctcagc acccctgtgg
3301 atggggcaga ggatcctaga tgtttggaag ccttgaagcc tggaaactgt ggtgaatatg
3361 tggttcgatg gtattatgac aaacaggtca actcttgtgc ccgattttgg ttcagtggct
3421 gtaatggctc aggaaataga ttcaacagtg aaaaggaatg tcaagaaacc tgcattcaag
3481 gatgagcaag taaattg
//